Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold20
Parameters: 2 7 7 80 10 50 1000
Length:  3599867

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  25  of  25  ( 2919 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3548586--3548646
31
2.0
31
93
0
104
68
3
0
27
1.05
3548592--3548649
21
2.8
20
82
7
80
72
3
0
24
1.00
3549889--3549921
13
2.5
14
85
14
52
63
0
0
36
0.95
3550579--3550637
14
4.1
14
75
16
57
42
1
0
55
1.09
3551657--3551711
10
5.5
10
80
8
58
72
3
0
23
1.00
3551667--3551730
30
2.1
31
88
2
94
68
4
1
25
1.17
3554570--3554608
11
3.7
11
86
10
55
30
0
0
69
0.89
3554570--3554607
20
1.9
20
88
0
58
31
0
0
68
0.90
3554924--3554978
15
3.7
15
83
16
62
52
1
0
45
1.11
3555193--3555244
25
2.1
25
82
7
61
42
0
5
51
1.25
3555254--3555299
22
2.1
22
88
8
67
47
2
4
45
1.34
3558207--3558233
2
13.5
2
100
0
54
51
0
0
48
1.00
3561736--3561783
15
3.3
14
78
16
53
62
4
0
33
1.14
3562094--3562152
18
3.1
18
75
25
59
35
0
0
64
0.94
3562721--3562747
2
13.5
2
100
0
54
0
48
0
51
1.00
3564586--3564612
2
13.5
2
100
0
54
0
0
48
51
1.00
3567629--3567731
2
50.5
2
68
11
57
45
10
1
41
1.50
3567600--3567688
43
2.1
43
89
0
133
46
15
2
35
1.59
3567629--3567731
49
2.1
49
98
0
197
45
10
1
41
1.50
3567932--3567958
3
9.0
3
100
0
54
66
0
0
33
0.92
3575324--3575376
6
8.7
6
85
6
63
18
1
0
79
0.83
3575324--3575375
17
2.9
17
83
16
61
19
1
0
78
0.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3576747--3576784
19
2.0
20
84
5
51
26
2
0
71
1.00
3576828--3576906
6
13.7
6
70
16
51
48
1
0
50
1.08
3576838--3576869
16
2.0
16
100
0
64
56
0
0
43
0.99
3576885--3576939
22
2.5
22
80
8
67
40
0
0
60
0.97
3576869--3576939
23
3.1
23
78
8
74
40
0
0
59
0.98
3576993--3577036
14
3.2
13
81
9
52
54
4
0
40
1.21
3582654--3582702
22
2.4
20
75
15
55
28
4
0
67
1.09
3582687--3582719
17
2.0
17
88
5
50
36
0
0
63
0.95
3582665--3582707
22
2.0
22
86
4
61
23
2
0
74
0.93
3586323--3586364
23
1.9
23
85
9
61
54
0
0
45
0.99
3586324--3586407
33
2.7
29
76
20
80
55
0
0
44
0.99
3586319--3586415
30
3.2
31
79
15
80
54
0
0
45
0.99
3588247--3588297
2
25.5
2
100
0
102
49
0
0
50
1.00
3590400--3590457
20
3.1
18
80
11
71
37
15
1
44
1.57
3590727--3590751
12
2.1
12
100
0
50
68
0
0
32
0.90
3594114--3594156
21
2.1
21
86
4
61
67
0
2
30
1.03
3598528--3598553
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25

The End!