genome.fa.s20.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold20
Parameters: 2 7 7 80 10 50 1000
Length:  3599867

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  11  of  25  ( 2919 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1544724--1544756	11	3.1	11	95	4	59	48	0	0	51	1.00
1545669--1545922	128	2.0	128	91	3	413	32	17	9	40	1.82
1547005--1547036	5	6.4	5	92	0	55	59	15	21	3	1.50
1547222--1547249	7	4.0	7	100	0	56	85	0	0	14	0.59
1548092--1548299	114	1.8	112	83	3	274	50	20	9	20	1.76
1550744--1551089	58	5.7	59	71	13	213	28	12	10	48	1.74
1550939--1550964	9	2.9	9	100	0	52	30	11	0	57	1.34
1552088--1552114	13	2.1	13	100	0	54	29	14	14	40	1.86
1552070--1552133	32	2.0	32	90	3	101	29	15	15	39	1.89
1552098--1552155	19	3.1	18	88	11	89	34	15	17	32	1.91
1552099--1552154	20	2.8	20	92	7	89	32	16	17	33	1.92
1552640--1552667	13	2.2	13	100	0	56	28	14	17	39	1.89
1552622--1552685	33	1.9	33	84	6	85	32	17	10	39	1.84
1559853--1559898	21	2.2	20	82	14	58	41	17	17	23	1.90
1560746--1560871	20	5.8	20	76	20	119	38	12	15	33	1.86
1561504--1561801	155	1.9	155	94	0	524	34	14	25	26	1.94
1561710--1561896	102	1.8	102	81	2	232	34	17	24	24	1.96
1561504--1561909	52	7.9	52	77	3	293	34	15	24	25	1.94
1561504--1561909	155	2.6	154	86	2	440	34	15	24	25	1.94
1561925--1562494	27	20.4	28	79	6	568	18	19	30	32	1.95
1561925--1562497	56	10.2	56	86	3	649	18	19	30	32	1.95
1561927--1562493	84	6.8	84	79	6	539	18	19	30	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1563910--1563991	29	2.9	29	85	5	87	2	3	13	80	0.95
1563913--1563991	8	9.9	8	74	14	56	2	2	13	81	0.91
1563911--1563991	32	2.5	33	86	4	103	2	2	13	81	0.90
1574126--1574150	13	1.9	13	100	0	50	36	16	16	32	1.90
1574106--1574172	33	2.0	33	88	0	98	32	11	14	40	1.83
1574213--1574237	13	1.9	13	100	0	50	32	16	16	36	1.90
1574226--1574374	52	2.9	52	95	2	264	31	20	17	30	1.95
1581569--1581616	13	3.5	13	88	8	69	87	12	0	0	0.54
1581567--1581616	18	2.9	18	91	5	77	88	12	0	0	0.53
1582563--1582796	31	7.6	31	72	10	142	25	28	17	29	1.97
1582563--1582771	31	6.8	29	75	15	170	25	28	16	28	1.97
1582563--1582778	62	3.5	62	81	9	244	25	29	16	29	1.96
1582801--1583554	27	23.8	34	74	17	491	20	35	13	30	1.91
1582799--1583549	61	11.9	64	83	11	467	20	35	13	30	1.91
1582937--1583521	61	9.4	61	84	11	715	20	36	13	30	1.91
1582839--1583391	249	2.2	249	95	1	986	20	36	13	30	1.91
1582806--1583521	310	2.3	308	90	5	1104	19	36	13	30	1.91
1583385--1583558	70	2.5	68	85	6	242	17	36	12	33	1.88
1583270--1583606	103	3.4	102	76	12	253	21	35	13	29	1.91
1583563--1583700	33	4.3	32	88	8	201	28	36	18	15	1.92
1583563--1583693	65	2.0	66	92	5	221	28	36	18	16	1.93
1583693--1584357	49	13.9	49	84	6	803	25	25	17	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1583693--1584414	98	7.5	97	85	6	893	25	25	17	31	1.97
1583886--1584304	43	9.1	43	81	11	424	25	26	18	30	1.98
1584047--1584114	21	3.2	21	61	19	50	26	23	17	32	1.97
1584049--1584115	22	3.1	22	61	26	52	26	20	17	34	1.96
1583688--1584357	281	2.3	281	91	2	1088	25	26	17	30	1.97
1584255--1584379	52	2.3	55	83	4	166	26	26	12	35	1.91
1584361--1584487	67	1.9	68	86	1	184	24	25	11	38	1.89
1585299--1585323	13	1.9	13	100	0	50	36	16	16	32	1.90
1585279--1585345	33	2.0	33	88	0	98	32	11	14	40	1.83
1585386--1585410	13	1.9	13	100	0	50	32	16	16	36	1.90
1593156--1593528	52	7.2	52	74	5	274	36	15	23	24	1.93
1593156--1593403	103	2.4	104	76	2	257	36	14	23	25	1.93
1593125--1593420	155	1.9	155	94	1	522	35	14	24	25	1.94
1593148--1593528	155	2.5	155	86	3	482	36	15	23	24	1.93
1593581--1593826	56	4.4	55	76	2	222	21	17	24	35	1.95
1593589--1593826	28	8.6	28	77	5	162	21	18	25	34	1.96
1593581--1593826	111	2.2	111	81	2	289	21	17	24	35	1.95
1596276--1596354	41	1.9	42	94	2	142	53	21	3	21	1.62
1599385--1599421	15	2.3	17	81	13	51	40	0	0	59	0.97
1599554--1599653	48	2.1	48	90	3	157	35	9	2	54	1.44
1599750--1599789	17	2.3	18	82	4	55	32	0	0	67	0.91
1599756--1599818	28	2.2	30	91	5	103	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1600040--1600112	24	3.0	25	73	15	64	39	0	1	58	1.06
1600054--1600135	27	3.0	26	75	18	87	35	0	1	63	1.02
1600062--1600137	20	4.3	18	73	20	56	36	0	0	63	0.95
1600055--1600137	16	4.5	19	71	21	61	36	0	1	62	1.03
1602826--1602890	22	3.0	22	86	2	96	44	6	7	41	1.58
1603007--1603033	13	2.1	13	100	0	54	29	14	14	40	1.86
1602988--1603051	33	2.0	32	87	3	92	29	15	12	42	1.84
1606366--1606432	35	1.9	35	90	3	109	31	23	11	32	1.91
1607027--1607051	13	1.9	13	100	0	50	36	16	16	32	1.90
1607009--1607072	33	2.0	32	90	3	101	40	14	15	29	1.86
1609418--1609449	10	3.1	11	91	8	50	37	0	25	37	1.56
1609617--1609662	21	2.2	21	88	0	65	32	17	17	32	1.93
1612054--1612184	50	2.6	49	80	6	145	26	22	11	39	1.88
1612119--1612367	79	3.2	77	83	5	293	26	26	14	32	1.95
1612119--1612420	158	1.9	158	80	5	351	27	26	13	32	1.94
1612354--1612464	51	2.2	51	86	3	152	29	25	11	33	1.91
1615850--1615978	52	2.5	52	94	0	222	31	17	16	34	1.92
1615850--1615998	52	2.9	51	88	4	210	32	17	16	33	1.93
1615987--1616011	13	1.9	13	100	0	50	36	16	16	32	1.90
1616052--1616118	33	2.0	33	88	0	98	40	14	11	32	1.83
1616074--1616098	13	1.9	13	100	0	50	32	16	16	36	1.90
1616775--1616884	49	2.2	49	85	3	150	31	17	22	28	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1616884--1617477	33	18.2	33	91	5	971	19	17	34	28	1.95
1616877--1617477	65	9.3	65	92	3	941	19	17	34	28	1.94
1616877--1617473	229	2.6	229	95	1	1062	19	17	34	28	1.95
1617544--1617836	31	9.0	30	72	14	183	31	13	34	20	1.92
1617513--1617835	100	3.2	100	84	5	390	31	13	34	20	1.91
1617478--1617836	131	2.7	130	83	5	422	32	13	33	20	1.91
1618788--1618825	16	2.4	16	91	4	60	0	0	13	86	0.56
1619176--1619205	12	2.5	12	100	0	60	0	0	6	93	0.35
1625471--1625498	13	2.2	13	100	0	56	7	14	25	53	1.66
1626101--1626229	52	2.5	52	94	0	222	31	17	16	34	1.92
1626101--1626249	52	2.9	51	88	4	210	32	17	16	33	1.93
1626238--1626262	13	1.9	13	100	0	50	36	16	16	32	1.90
1626303--1626369	33	2.0	33	88	0	98	40	11	11	35	1.79
1627358--1627391	10	3.4	10	87	0	50	50	20	2	26	1.63
1630533--1630561	15	1.9	15	100	0	58	27	27	3	41	1.72
1632908--1632944	19	1.9	19	88	0	56	45	5	8	40	1.56
1634783--1634846	27	2.3	27	86	2	83	56	3	23	17	1.55
1635344--1635386	22	2.0	22	90	4	70	41	6	9	41	1.64
1635484--1635547	33	2.0	32	90	3	101	28	15	14	42	1.86
1636084--1636149	35	1.9	34	90	3	105	33	12	24	30	1.91
1638829--1639254	167	2.6	167	83	7	512	48	8	11	31	1.70
1638984--1639399	167	2.5	166	81	7	452	50	9	10	30	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1640527--1640890	81	4.5	81	78	4	340	45	14	19	21	1.85
1640551--1640890	163	2.1	163	81	4	393	45	13	19	21	1.84
1640837--1641037	45	4.8	44	68	22	126	42	17	20	19	1.90
1640795--1641071	126	2.2	123	83	4	351	44	15	19	20	1.87
1640955--1641038	42	2.0	42	88	4	125	41	16	22	19	1.90
1641344--1641387	21	2.1	21	87	8	63	15	18	2	63	1.41
1643200--1643565	81	4.5	81	75	4	297	45	13	20	21	1.85
1643491--1643610	45	2.6	45	82	8	145	45	15	20	18	1.85
1643727--1643760	18	1.9	18	88	5	52	50	2	2	44	1.32
1644905--1644952	8	5.9	8	88	11	71	0	14	0	85	0.60

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25