genome.fa.s20.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold20
Parameters: 2 7 7 80 10 50 1000
Length:  3599867

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  5  of  25  ( 2919 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
672405--672521	51	2.3	51	83	5	148	30	25	11	32	1.91
672379--672627	130	1.9	129	83	6	324	28	24	12	34	1.92
672534--672705	51	3.4	51	81	2	202	29	27	11	31	1.92
672688--672722	17	2.1	17	88	0	52	25	45	20	8	1.79
679979--680003	12	2.1	12	100	0	50	40	0	16	44	1.47
680954--681020	27	2.5	27	92	0	107	37	13	8	40	1.76
683414--683466	27	2.0	27	84	0	70	43	24	11	20	1.85
687909--688121	105	2.0	105	100	0	426	43	22	11	22	1.85
689513--689552	2	20.0	2	94	0	71	0	2	50	47	1.14
690427--690476	2	25.0	2	87	0	73	0	50	6	44	1.26
690419--690476	8	7.4	8	88	9	75	1	48	6	43	1.40
690772--690819	19	2.6	18	81	15	53	29	4	2	64	1.23
691471--691510	3	13.3	3	100	0	80	32	0	0	67	0.91
691638--691685	12	4.1	13	72	25	52	62	0	37	0	0.95
691651--691699	21	2.3	21	80	16	57	67	0	32	0	0.91
691858--691886	11	2.5	12	88	11	51	31	0	0	68	0.89
691842--691891	19	2.7	19	81	3	57	36	0	0	64	0.94
691818--691897	8	10.0	8	71	10	56	37	1	1	60	1.13
692692--692739	23	2.0	24	84	4	62	43	2	2	52	1.24
692705--692751	24	2.0	24	83	8	60	40	6	2	51	1.39
693411--693473	24	2.8	24	79	16	71	58	1	0	39	1.07
695158--695183	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
695140--695204	32	2.0	34	87	6	98	38	20	13	27	1.90
697235--697266	15	2.1	16	88	11	50	34	6	6	53	1.51
699418--699482	28	2.4	27	79	7	78	72	3	0	24	0.99
699433--699477	17	2.7	17	86	3	56	73	0	0	26	0.84
699426--699474	10	5.1	10	76	14	50	73	0	0	26	0.83
701085--701115	16	1.9	16	93	0	53	51	0	0	48	1.00
703250--703356	22	4.8	22	73	14	94	43	0	3	52	1.19
703288--703353	15	4.5	15	77	7	73	46	0	3	50	1.16
703290--703351	31	2.1	29	84	6	79	50	0	3	46	1.17
703325--703396	37	1.9	37	88	0	108	50	6	1	41	1.38
703250--703392	68	2.2	66	81	5	162	45	2	2	48	1.31
703458--703490	16	2.0	17	94	5	59	45	0	0	54	0.99
703465--703518	15	3.1	18	72	25	53	42	0	0	57	0.98
704059--704101	10	4.2	10	79	5	50	23	0	4	72	1.04
705989--706022	16	2.1	16	88	5	50	47	0	0	52	1.00
709391--709476	19	4.8	18	72	21	65	32	15	12	39	1.85
709411--709435	13	1.9	13	100	0	50	32	16	16	36	1.90
709379--709456	32	2.4	32	91	0	120	33	16	14	35	1.89
712272--712378	51	2.1	52	85	5	146	42	13	15	28	1.84
713240--713294	19	3.1	18	76	21	62	74	0	25	0	0.82
713242--713294	9	5.9	9	75	16	56	75	0	24	0	0.80
714811--714866	29	2.0	28	82	3	67	37	23	3	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
716513--716558	6	7.7	6	83	9	58	69	2	0	28	1.00
716520--716555	19	1.9	18	88	5	54	69	2	0	27	1.02
718729--718808	35	2.3	35	95	0	142	27	23	20	28	1.99
724447--724871	80	5.4	79	82	4	428	33	11	27	27	1.90
724447--724872	159	2.7	159	79	6	472	33	11	27	27	1.91
727328--727403	20	3.8	19	73	16	64	38	15	17	28	1.90
729764--729806	17	2.5	17	73	3	50	0	39	0	60	0.97
730164--730320	20	7.8	20	72	18	112	26	17	14	41	1.88
730202--730231	13	2.3	13	94	0	51	30	20	10	40	1.85
732608--732790	51	3.6	51	79	0	197	28	24	12	34	1.91
732770--732824	28	2.0	28	89	7	85	21	25	18	34	1.96
732772--732846	28	2.7	27	76	15	73	21	28	21	29	1.98
732798--733008	82	2.6	79	83	8	230	25	24	18	31	1.98
732719--733088	190	2.0	188	85	3	510	25	24	17	33	1.96
732829--733008	82	2.2	82	88	2	256	25	25	18	30	1.98
732883--733144	108	2.4	109	87	2	359	24	27	18	29	1.98
733127--733246	51	2.4	51	79	0	150	30	24	12	33	1.92
735243--735636	156	2.5	155	84	3	490	40	21	16	22	1.91
735243--735659	153	2.7	154	83	3	491	41	20	15	23	1.90
736478--736506	10	3.0	10	95	5	51	62	10	0	27	1.28
736954--736978	13	1.9	13	100	0	50	0	12	0	88	0.53
737456--737492	15	2.3	17	86	9	51	67	10	0	21	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
737661--737910	130	1.9	130	90	1	394	50	8	7	34	1.60
737660--737949	130	2.2	128	82	9	340	51	6	8	32	1.60
740440--740577	52	2.7	52	83	6	158	46	13	11	28	1.78
741385--741625	103	2.3	105	80	5	256	35	15	23	25	1.94
741257--741690	52	8.1	54	72	9	248	37	14	23	24	1.92
741488--741691	54	3.7	56	79	5	170	34	15	26	24	1.94
741695--741891	31	6.1	32	71	8	121	25	18	25	30	1.98
741728--741891	65	2.6	64	75	8	147	26	17	26	30	1.97
741873--742221	29	11.9	29	77	8	253	33	12	27	25	1.93
741896--742213	89	3.6	91	73	9	203	33	12	27	26	1.92
741896--742221	57	5.6	58	72	5	217	33	12	28	26	1.92
741899--742221	146	2.2	147	81	1	396	33	12	28	25	1.92
748368--748555	51	3.7	50	85	3	216	43	11	16	28	1.83
748591--748644	20	2.6	21	88	2	74	31	14	14	38	1.87
749768--749800	9	3.8	9	88	8	50	87	0	12	0	0.53
749770--749801	16	2.0	16	93	0	55	84	0	15	0	0.63
750587--750742	57	2.7	56	83	3	179	23	13	10	52	1.71
750643--750685	9	4.5	10	82	8	54	20	9	9	60	1.55
750587--750781	57	3.4	56	74	13	150	25	12	10	51	1.72
750786--750884	47	2.1	47	84	0	126	29	11	9	50	1.68
750846--750905	29	2.1	27	82	11	68	35	6	6	51	1.54
752672--752743	31	2.1	35	82	14	89	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
753023--753059	11	3.4	11	84	0	56	37	0	0	62	0.96
756701--756874	92	1.9	92	83	2	224	32	15	8	43	1.77
756744--757034	161	1.8	161	82	3	379	31	14	8	44	1.76
757012--757051	17	2.4	17	91	0	71	35	12	10	42	1.76
756922--757137	103	2.0	109	89	5	336	34	14	9	42	1.77
757083--757366	95	3.0	94	89	2	444	32	14	6	46	1.71
757031--757366	188	1.8	181	89	4	519	32	15	7	44	1.74
758663--758703	20	1.9	23	85	14	61	36	0	7	56	1.27
758663--758709	20	2.2	23	81	11	55	36	0	8	55	1.31
758792--758835	21	2.2	20	84	12	54	36	4	4	54	1.41
759574--759629	20	2.7	21	69	5	51	33	16	16	33	1.91
761231--761428	58	3.4	58	86	4	274	28	10	18	42	1.83
761231--761465	58	4.1	58	84	3	262	29	10	17	42	1.82
761231--761445	115	1.9	115	84	3	290	29	10	18	41	1.83
761411--761506	49	2.0	49	85	4	131	29	10	16	43	1.81
761459--761607	58	2.6	57	77	12	151	30	11	12	44	1.78
762862--762919	23	2.6	22	81	5	71	48	17	3	31	1.64
762862--762926	22	2.9	22	81	4	76	47	15	3	33	1.61
762914--762976	15	4.3	14	82	10	65	50	0	0	49	1.00
764531--764572	17	2.4	18	80	15	52	59	7	2	30	1.37
764840--764934	48	2.0	48	97	0	181	25	23	9	42	1.84
765312--765371	27	2.3	25	85	5	75	43	0	11	45	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
765651--765691	16	2.6	16	96	0	73	41	17	17	24	1.89
765662--765699	16	2.4	16	90	0	58	36	26	18	18	1.94
766527--766557	16	1.9	16	93	0	53	41	12	9	35	1.76
766579--766639	26	2.3	27	82	2	70	57	8	1	32	1.38
766627--766672	15	3.0	15	87	3	65	52	4	0	43	1.21
767001--767164	16	10.2	16	74	9	147	42	1	2	53	1.25
767087--767156	31	2.2	31	92	2	113	45	1	2	50	1.25
767004--767164	47	3.4	47	75	12	148	42	1	2	52	1.25
767197--767230	14	2.3	15	90	5	52	61	0	2	35	1.11
768684--768733	15	3.1	16	80	8	57	34	6	0	60	1.21

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25