genome.fa.s8243.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008243.1 Hibiscus syriacus cultivar Beakdansim tig00110893_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10265705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   

This is table  27  of  49  ( 5786 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5814504--5814545	22	1.9	22	85	0	57	38	21	9	30	1.85
5814503--5814551	22	2.2	22	77	0	53	42	20	8	28	1.80
5814831--5814869	6	6.5	6	93	0	69	33	48	15	2	1.58
5819510--5819804	20	14.5	20	75	12	192	39	24	16	19	1.92
5819509--5819785	41	6.8	41	86	4	294	39	24	16	19	1.91
5820444--5820477	12	2.8	12	90	0	50	55	29	0	14	1.40
5820603--5820652	24	2.1	24	92	0	82	22	20	20	38	1.94
5822864--5822918	14	3.6	14	73	21	56	45	20	23	10	1.82
5822845--5822937	33	2.8	33	93	1	150	44	20	22	12	1.85
5822878--5822988	19	6.4	19	74	19	125	45	17	22	14	1.84
5822878--5822988	52	2.1	52	98	0	213	45	17	22	14	1.84
5822930--5823010	33	2.5	33	93	0	144	44	17	23	14	1.86
5822845--5823010	85	1.9	86	92	1	280	43	18	23	13	1.86
5823021--5823282	33	7.8	33	83	9	350	12	23	18	45	1.83
5823015--5823282	52	5.3	50	78	12	219	12	23	18	45	1.83
5823177--5823264	14	5.6	14	70	23	59	12	23	18	45	1.83
5823015--5823282	85	3.2	85	88	6	425	12	23	18	45	1.83
5823389--5823425	14	2.6	14	91	0	65	45	21	0	32	1.52
5824760--5824853	42	2.2	42	81	7	102	21	20	35	23	1.96
5825291--5825442	19	8.8	18	69	20	94	46	20	21	11	1.83
5825291--5825406	52	2.2	52	92	0	187	45	21	21	11	1.82
5825345--5825437	33	2.8	33	91	0	150	46	18	21	13	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5825467--5825531	19	3.7	19	78	19	86	9	21	20	49	1.76
5825438--5825531	33	2.8	33	88	0	143	8	19	23	48	1.75
5825484--5825510	14	1.9	14	100	0	54	7	25	22	44	1.79
5825501--5825547	19	2.4	19	89	3	67	12	17	25	44	1.84
5825595--5825867	92	3.1	85	86	8	275	45	18	13	22	1.84
5825645--5825867	92	2.4	93	92	3	369	45	17	13	22	1.84
5827558--5827657	33	2.8	36	80	17	118	47	19	24	10	1.79
5827558--5827670	19	6.1	19	77	13	119	46	19	23	10	1.81
5827682--5827813	41	3.2	41	98	0	255	12	20	20	46	1.82
5827677--5827814	20	6.8	20	80	4	150	11	20	20	47	1.80
5828348--5828502	20	7.6	21	73	12	108	18	17	25	38	1.93
5828907--5828962	6	9.3	6	78	7	51	33	28	33	3	1.75
5831137--5831161	2	12.5	2	100	0	50	48	0	0	52	1.00
5831654--5831872	98	2.2	98	98	0	420	39	13	12	34	1.82
5834574--5834643	12	5.8	12	70	6	52	51	18	11	18	1.75
5834579--5834666	24	3.7	24	78	3	88	48	17	12	21	1.79
5834572--5834678	48	2.2	47	85	6	135	49	16	13	20	1.79
5834572--5834680	24	4.5	25	74	11	84	49	16	13	20	1.79
5837694--5837806	3	37.7	3	92	0	190	34	2	0	62	1.09
5850596--5850682	1	87.0	1	88	0	111	91	0	8	0	0.40
5850596--5850682	17	4.8	18	88	7	124	91	0	8	0	0.40
5850596--5850683	22	3.9	22	88	7	124	90	0	9	0	0.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5850995--5851039	16	2.8	16	83	10	56	28	8	6	55	1.56
5851822--5852199	83	4.6	83	95	1	674	28	13	22	35	1.92
5853002--5853378	110	3.5	111	88	7	544	37	13	19	29	1.90
5853523--5853606	3	28.7	3	85	9	111	35	3	0	60	1.14
5856649--5856689	21	2.0	21	90	0	64	43	9	4	41	1.59
5863365--5863417	27	1.9	28	84	3	72	22	16	3	56	1.56
5864482--5864535	26	2.0	27	89	3	83	61	3	3	31	1.31
5864503--5864558	19	2.9	19	97	2	103	58	0	1	39	1.08
5871857--5871928	37	1.9	38	82	2	92	33	36	9	20	1.86
5875097--5875607	256	2.0	256	98	0	995	40	10	14	34	1.80
5876068--5876131	25	2.5	25	75	7	67	39	7	1	51	1.40
5876382--5876433	21	2.5	21	81	3	61	38	19	25	17	1.93
5876422--5876535	20	5.7	20	81	6	104	31	24	18	25	1.97
5876419--5876535	61	1.9	61	83	0	153	33	23	17	24	1.97
5877052--5877132	19	4.5	19	73	16	73	46	24	17	11	1.80
5877142--5877229	33	2.6	33	92	1	140	11	25	25	38	1.89
5877197--5877254	20	2.9	20	77	10	55	15	24	17	43	1.87
5879255--5879377	42	2.9	42	80	2	122	22	36	17	22	1.95
5879311--5879377	21	3.2	21	66	6	55	23	35	20	19	1.95
5880736--5880771	14	2.6	14	95	0	63	30	0	25	44	1.54
5880950--5881100	19	8.7	19	64	21	80	15	22	20	41	1.89
5880954--5881080	33	3.9	32	87	8	193	14	22	19	42	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5880947--5881079	66	2.0	66	97	0	248	16	22	19	41	1.90
5883572--5883625	24	2.2	24	90	0	81	38	20	16	24	1.92
5884685--5884742	20	2.9	20	94	0	98	37	22	22	17	1.93
5884761--5884847	19	4.8	19	90	9	139	13	21	17	47	1.82
5884761--5884876	33	3.4	33	84	11	151	13	22	19	43	1.86
5884964--5885000	14	2.6	14	86	0	56	48	21	0	29	1.50
5886869--5886935	19	3.5	19	75	4	71	38	22	22	16	1.92
5886924--5886981	14	3.9	14	79	16	71	48	25	17	8	1.75
5886916--5886986	32	2.2	33	97	2	135	47	23	19	8	1.77
5886993--5887056	19	3.6	19	68	20	57	12	20	18	48	1.80
5887041--5887084	20	2.2	20	84	4	54	18	22	18	40	1.91
5887577--5887621	18	2.5	18	85	0	63	15	15	42	26	1.87
5888941--5888994	20	2.8	20	80	2	65	48	22	16	12	1.80
5889221--5889269	22	2.3	21	80	10	55	24	14	40	20	1.89
5889228--5889271	22	2.0	22	90	0	70	20	15	43	20	1.88
5889811--5889869	20	3.0	20	87	0	73	42	22	18	16	1.89
5890132--5890175	22	2.0	22	95	0	79	18	11	45	25	1.82
5890363--5890415	20	2.7	20	93	0	88	24	18	28	28	1.98
5890343--5890457	20	5.7	20	77	9	81	23	17	23	35	1.95
5890385--5890519	41	3.3	41	82	4	139	19	21	20	38	1.94
5890451--5890521	21	3.4	21	80	3	99	15	23	18	42	1.88
5890465--5890538	20	3.7	20	80	3	94	17	22	18	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5890449--5890538	41	2.2	41	100	0	180	17	24	17	40	1.91
5891092--5891136	19	2.2	21	88	7	67	62	4	13	20	1.48
5891747--5891929	100	1.8	99	87	3	269	34	10	8	46	1.69
5892552--5892591	20	2.0	20	90	0	62	22	22	17	37	1.94
5893145--5893189	19	2.4	19	88	0	63	48	24	15	11	1.77
5893185--5893301	52	2.2	52	89	0	180	12	22	20	44	1.85
5893251--5893338	33	2.6	33	96	1	158	11	26	21	40	1.87
5893185--5893362	19	10.1	19	68	19	107	12	23	19	44	1.85
5895457--5895620	42	3.9	42	81	0	193	22	37	17	22	1.94
5895464--5895659	21	9.3	21	64	6	74	23	35	18	22	1.95
5895454--5895629	84	2.1	84	96	0	325	22	37	17	23	1.94
5895509--5895659	42	3.6	41	78	8	151	22	36	19	21	1.95
5895454--5895659	84	2.5	84	90	1	270	22	36	17	22	1.95
5897903--5897927	12	2.1	12	100	0	50	0	28	0	72	0.86
5898103--5898156	24	2.2	24	90	0	81	40	20	16	22	1.91
5898899--5898951	20	2.7	20	96	0	97	26	16	26	30	1.97
5899012--5899080	20	3.4	20	76	11	68	36	21	18	23	1.95
5899040--5899089	20	2.5	20	80	0	73	38	22	18	22	1.94
5899303--5899370	20	3.4	20	72	8	75	39	23	20	16	1.91
5899582--5899618	14	2.6	14	86	0	56	48	21	0	29	1.50
5900843--5900871	15	1.9	15	100	0	58	27	20	37	13	1.91
5901444--5901581	20	7.7	19	73	16	82	44	21	20	13	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5901441--5901542	20	5.5	19	74	14	88	44	19	20	15	1.87
5901500--5901558	14	3.9	14	74	20	55	50	23	15	10	1.74
5901484--5901576	33	2.8	33	95	1	161	47	22	18	11	1.81
5901612--5901667	14	3.7	14	78	17	67	8	17	23	50	1.74
5901593--5901683	32	2.8	33	93	3	166	12	19	20	47	1.81
5901668--5901711	20	2.2	20	88	4	63	18	25	20	36	1.95
5902204--5902248	18	2.5	18	88	0	72	13	15	44	26	1.83
5903864--5903907	22	2.0	22	90	0	70	18	13	45	22	1.84
5904075--5904209	20	6.7	19	78	9	99	24	17	23	34	1.95
5904075--5904212	61	2.3	61	83	0	177	23	16	23	36	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49