Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008243.1 Hibiscus syriacus cultivar Beakdansim tig00110893_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10265705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   

This is table  49  of  49  ( 5786 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10191475--10191524
15
3.5
15
75
20
54
16
8
0
76
1.02
10200186--10200219
17
2.0
17
94
0
59
32
5
0
61
1.20
10210662--10210716
22
2.5
22
75
0
56
29
9
23
38
1.85
10216244--10216279
15
2.4
15
95
0
63
11
38
38
11
1.76
10216442--10216516
22
3.4
22
86
0
87
29
9
24
37
1.86
10217395--10217434
18
2.3
18
95
4
73
22
0
15
62
1.32
10218478--10218526
22
2.2
22
96
0
89
51
8
10
30
1.65
10220515--10220592
31
2.5
31
89
0
120
20
19
17
42
1.90
10221437--10221466
14
2.1
14
100
0
60
23
23
20
33
1.97
10226919--10226981
16
3.9
16
91
0
108
55
22
12
9
1.65
10227733--10227778
14
3.3
14
79
11
58
52
19
13
15
1.75
10228129--10228160
14
2.2
15
94
5
57
0
31
0
68
0.90
10230287--10230337
25
2.0
25
96
0
93
39
17
23
19
1.92
10230299--10230705
202
2.0
202
99
0
796
30
15
21
31
1.95
10238348--10238405
20
2.7
20
81
10
62
31
18
20
29
1.97
10239187--10239251
31
2.1
31
88
0
94
23
18
20
38
1.93
10239210--10239305
30
3.2
29
82
5
77
18
19
25
36
1.95
10239237--10239308
29
2.4
30
86
2
92
18
20
27
33
1.96
10240126--10240171
23
2.0
23
87
8
67
30
26
21
21
1.99
10240149--10240452
149
2.0
149
99
0
599
36
20
15
28
1.93
10240908--10241066
63
2.5
62
85
6
205
27
21
17
33
1.96
10246237--10246283
20
2.3
21
85
7
62
46
0
0
53
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
10247235--10247281
16
3.1
15
79
8
51
25
2
4
68
1.19
10248301--10248352
22
2.5
21
81
6
61
46
1
0
51
1.12
10260991--10261038
20
2.5
19
86
6
69
56
2
10
31
1.45
10260996--10261042
20
2.3
20
96
0
85
57
2
10
29
1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49

The End!