genome.fa.s8243.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008243.1 Hibiscus syriacus cultivar Beakdansim tig00110893_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10265705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   

This is table  47  of  49  ( 5786 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9712513--9712604	33	2.8	33	93	3	150	7	18	28	45	1.76
9712688--9713146	91	5.1	93	95	4	807	45	18	12	22	1.83
9714734--9714879	31	4.5	33	90	5	244	45	21	23	9	1.81
9714741--9714884	19	8.8	18	68	26	90	43	22	24	9	1.83
9714896--9714950	14	3.6	14	73	21	56	9	25	23	41	1.83
9714880--9714950	33	2.2	33	94	0	124	8	22	25	43	1.81
9714891--9714972	33	2.5	33	89	2	119	9	25	21	42	1.84
9715071--9715139	32	2.2	32	91	0	111	46	18	21	13	1.83
9715416--9715470	22	2.5	22	81	0	74	20	16	40	23	1.91
9715313--9715517	103	2.0	102	99	0	401	22	11	40	25	1.88
9715616--9715809	20	9.6	20	81	6	212	19	19	25	35	1.95
9715616--9715809	61	3.2	60	81	5	237	19	19	25	35	1.95
9715615--9715809	81	2.4	81	83	3	241	18	19	25	35	1.95
9719516--9719632	37	3.5	32	82	12	135	38	35	11	15	1.83
9724865--9725046	5	37.8	5	88	11	283	39	0	0	60	0.96
9729609--9729774	82	2.0	84	97	2	318	35	14	24	25	1.93
9732223--9732265	17	2.6	16	78	7	50	39	25	0	34	1.56
9735523--9735565	21	2.0	21	90	0	68	32	27	23	16	1.96
9737084--9737302	103	2.1	103	93	0	366	26	13	23	37	1.91
9737314--9737386	23	3.3	23	78	3	78	24	20	23	31	1.98
9738255--9738318	23	2.8	23	90	0	92	29	25	25	20	1.99
9738339--9738522	98	1.9	97	90	4	293	37	22	11	28	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9739871--9739930	20	2.9	21	85	7	86	18	23	25	33	1.97
9745963--9746435	236	2.0	233	97	2	799	33	23	17	25	1.96
9755393--9755463	29	2.4	29	92	0	115	26	16	19	36	1.94
9758014--9758048	18	1.9	18	88	11	54	22	17	5	54	1.64
9758538--9758696	64	2.5	62	87	7	221	26	21	18	33	1.97
9761717--9761764	25	1.9	25	91	8	80	14	12	4	68	1.34
9764354--9764410	28	2.0	28	90	6	89	33	22	14	29	1.93
9765396--9765426	2	15.5	2	100	0	62	51	0	0	48	1.00
9767133--9767160	10	2.8	10	100	0	56	75	0	25	0	0.81
9773635--9773675	17	2.6	16	88	7	57	31	19	9	39	1.84
9775419--9775639	4	55.2	4	98	0	424	23	0	25	50	1.53
9775617--9775799	6	30.5	6	93	0	312	1	1	46	50	1.21
9775617--9775799	4	45.8	4	96	0	312	1	1	46	50	1.21
9782519--9782545	14	1.9	14	100	0	54	37	7	3	51	1.48
9783172--9783209	3	12.7	3	100	0	76	65	0	0	34	0.93
9785889--9785919	2	15.5	2	100	0	62	48	0	0	51	1.00
9789190--9789286	42	2.3	42	92	0	158	28	19	17	34	1.95
9793311--9793432	49	2.4	52	86	6	171	19	22	18	38	1.93
9794804--9794874	31	2.2	32	83	11	85	32	8	11	47	1.69
9811307--9811348	15	2.7	15	85	10	50	76	2	2	19	1.01
9811335--9811377	17	2.7	15	80	16	50	74	6	2	16	1.14
9811335--9811377	16	2.6	16	86	13	61	74	6	2	16	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9812386--9812410	13	1.9	13	100	0	50	16	24	0	60	1.36
9812707--9813098	44	8.9	44	66	6	195	27	18	21	32	1.97
9812707--9813308	88	7.0	85	73	10	436	28	18	20	32	1.96
9812707--9813313	175	3.5	173	80	6	567	28	18	20	32	1.96
9813676--9813771	36	2.7	36	86	3	131	41	17	17	22	1.90
9813784--9813863	37	2.2	35	82	6	88	35	11	18	35	1.87
9813989--9814027	20	2.0	20	94	0	69	25	23	28	23	1.99
9814203--9814295	42	2.2	41	86	5	132	30	23	18	27	1.98
9814304--9814633	43	7.7	43	93	0	486	25	31	14	28	1.95
9814538--9814604	22	3.1	22	60	4	55	26	32	13	26	1.94
9816742--9816816	23	3.3	22	68	15	62	38	8	21	32	1.82
9816716--9816828	46	2.5	46	91	4	178	40	6	19	33	1.76
9816977--9817069	38	2.5	37	89	5	136	24	21	27	25	1.99
9818847--9818929	7	11.7	7	75	12	71	2	20	0	77	0.89
9818876--9818928	27	1.9	28	88	11	83	1	18	0	79	0.83
9818898--9818938	17	2.4	17	88	8	57	7	17	0	75	1.02
9822645--9822688	17	2.6	16	82	10	52	72	6	2	18	1.17
9822640--9822688	16	3.0	16	82	11	55	75	6	2	16	1.09
9822664--9822704	21	2.0	21	85	9	57	70	7	0	21	1.11
9824346--9824416	35	2.0	35	97	0	133	52	2	8	36	1.47
9828334--9828412	22	3.5	22	75	5	70	44	16	18	20	1.87
9828378--9828413	12	3.0	12	95	0	63	36	22	25	16	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9838537--9838584	22	2.3	21	85	7	62	41	20	20	16	1.90
9839295--9839537	122	2.0	123	87	4	357	38	9	16	35	1.81
9839594--9839716	60	2.0	60	84	3	158	36	16	15	31	1.90
9839970--9840097	51	2.5	51	94	0	220	40	14	14	29	1.87
9847660--9847708	17	3.1	17	68	17	50	14	40	0	44	1.45
9848668--9848716	17	3.1	17	68	17	50	14	40	0	44	1.45
9853464--9853533	35	2.0	35	86	5	97	30	15	28	25	1.96
9853619--9853660	18	2.3	18	95	0	75	30	21	11	35	1.90
9857554--9857670	36	3.3	36	96	1	209	30	23	27	17	1.97
9864868--9864932	22	3.0	22	95	2	114	24	4	30	40	1.75
9865452--9865493	2	21.0	2	80	9	50	47	2	2	47	1.28
9866749--9866791	22	2.0	22	90	0	68	48	4	2	44	1.36
9867554--9868837	214	6.0	213	92	1	2094	41	12	12	33	1.80
9872407--9872440	16	2.1	16	88	0	50	41	8	0	50	1.34
9873233--9873267	2	17.5	2	93	0	61	48	2	0	48	1.16
9873265--9873303	4	9.8	4	94	0	69	28	0	23	48	1.51
9891606--9891878	136	2.0	136	99	0	537	38	13	20	27	1.90
9891635--9891913	136	2.0	135	88	4	398	40	14	19	26	1.90
9893753--9893784	2	16.0	2	100	0	64	50	0	0	50	1.00
9894993--9895058	31	2.1	31	86	10	91	40	12	6	40	1.67
9896156--9896194	17	2.4	17	95	4	71	51	5	0	43	1.24
9896309--9896334	9	2.9	9	100	0	52	23	7	23	46	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9897930--9897968	7	5.9	7	88	11	64	71	12	0	15	1.14
9897966--9898004	6	6.5	6	93	0	69	35	15	0	48	1.45
9898213--9898270	26	2.2	26	81	6	64	44	5	6	43	1.53
9901566--9901851	42	6.8	42	78	5	283	33	20	20	25	1.97
9901564--9901851	85	3.4	86	81	7	288	33	20	20	25	1.97
9902550--9902581	14	2.3	14	100	0	64	43	18	21	15	1.87
9905891--9906041	42	3.6	41	71	14	130	31	19	17	30	1.96
9905807--9906035	82	2.8	82	81	2	253	30	20	17	31	1.96
9908281--9908330	22	2.3	20	78	18	55	34	2	0	64	1.05
9911004--9911264	105	2.4	106	92	5	416	37	8	15	37	1.79
9913490--9913540	21	2.3	23	83	6	61	56	7	17	17	1.63
9914012--9914202	95	2.0	95	94	0	337	36	17	9	36	1.83
9914235--9914268	16	2.1	16	94	0	59	32	0	0	67	0.91
9914415--9914464	25	2.0	25	84	3	66	44	8	0	48	1.32
9914410--9914469	24	2.5	24	81	5	68	40	8	0	51	1.32
9914435--9914502	30	2.2	30	84	7	84	39	8	0	51	1.33
9918597--9918672	31	2.5	31	82	4	100	27	6	15	50	1.69
9921016--9921050	12	2.9	12	86	0	52	2	22	31	42	1.68
9925926--9926013	44	2.0	44	100	0	176	31	15	22	29	1.95
9928945--9928999	21	2.7	20	78	15	58	40	3	1	54	1.28
9936312--9936348	16	2.3	16	90	0	56	29	2	21	45	1.65
9939941--9939978	20	1.9	20	94	0	67	28	18	15	36	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9941682--9941760	10	8.1	10	79	10	92	18	22	30	27	1.98
9941682--9941755	19	3.8	19	89	7	96	18	24	29	27	1.98
9941698--9941760	29	2.2	30	82	8	85	17	22	31	28	1.96
9941756--9941813	17	3.4	17	85	0	80	20	41	20	17	1.90
9941803--9941852	7	7.4	7	91	8	86	16	30	30	24	1.96
9941803--9941848	13	3.5	13	96	3	83	15	30	30	23	1.95
9941803--9941852	20	2.5	20	93	6	84	16	30	30	24	1.96
9948920--9948988	10	7.1	10	77	12	81	18	23	28	28	1.98
9948920--9948990	19	3.7	19	90	5	99	18	25	28	28	1.98
9948985--9949041	17	3.4	17	97	0	105	17	43	22	15	1.87

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49