genome.fa.s8243.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008243.1 Hibiscus syriacus cultivar Beakdansim tig00110893_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10265705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   

This is table  32  of  49  ( 5786 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6756198--6756274	37	2.1	37	83	9	95	46	2	3	46	1.34
6760275--6760315	16	2.6	16	78	17	50	34	9	12	43	1.75
6760308--6760503	96	2.0	97	89	2	297	27	10	18	42	1.84
6764410--6764473	24	2.7	24	85	0	83	50	17	14	18	1.79
6769091--6769161	24	3.0	24	89	0	115	50	18	14	16	1.78
6769093--6769161	12	5.8	12	76	6	68	50	18	14	15	1.78
6769091--6769185	24	4.0	24	84	2	111	49	16	12	21	1.79
6769091--6769182	48	1.9	48	86	4	132	50	16	13	20	1.78
6769309--6769369	12	5.1	12	74	7	52	50	18	14	16	1.78
6769309--6769417	24	4.5	24	75	6	105	47	15	16	20	1.82
6768975--6769411	218	2.0	215	94	1	766	41	24	16	17	1.90
6773972--6774045	35	2.1	35	97	0	139	32	10	14	41	1.81
6781936--6781983	2	25.0	2	91	8	82	52	0	0	47	1.00
6781936--6781983	21	2.3	21	100	0	96	52	0	0	47	1.00
6786868--6787130	132	2.0	132	93	0	445	36	17	15	30	1.91
6787210--6787293	28	3.1	29	64	20	72	29	8	9	52	1.63
6793416--6793455	21	1.9	21	90	10	64	5	35	0	60	1.19
6793908--6793948	21	2.0	21	85	0	55	31	29	21	17	1.96
6794365--6794440	25	2.9	25	77	21	75	38	9	13	39	1.76
6794373--6794440	25	2.5	26	83	11	84	38	10	13	38	1.78
6794455--6794515	30	2.0	32	87	6	90	37	6	22	32	1.80
6794725--6794791	22	3.0	22	97	0	125	19	26	28	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6796573--6796935	180	2.0	181	96	3	678	15	15	22	46	1.83
6797543--6798009	157	3.0	155	83	6	606	28	19	4	47	1.69
6800719--6800809	20	4.6	20	86	2	85	21	19	21	36	1.95
6800806--6800861	20	2.7	21	80	5	69	42	16	21	19	1.89
6800739--6800947	41	5.1	41	72	6	138	29	19	19	32	1.96
6800925--6800974	21	2.4	22	76	6	59	38	18	24	20	1.93
6800716--6800994	123	2.3	121	77	8	287	30	18	20	30	1.96
6804065--6804140	29	2.6	29	85	0	89	42	27	7	22	1.81
6804159--6804189	13	2.4	13	94	0	53	16	19	48	16	1.81
6804216--6804268	11	5.1	11	84	13	76	37	24	18	18	1.94
6804202--6804268	19	3.4	19	82	11	80	35	25	20	17	1.95
6811351--6811387	13	2.8	13	95	0	65	18	18	45	16	1.85
6811400--6811435	11	3.6	10	89	10	56	33	30	22	13	1.93
6814131--6814253	44	2.8	44	98	0	237	45	14	9	30	1.77
6815496--6815625	65	2.0	65	100	0	260	49	13	10	26	1.75
6816021--6816053	14	2.4	14	85	5	50	63	30	0	6	1.18
6820294--6820342	23	2.1	23	84	0	62	16	20	24	38	1.92
6820372--6820418	24	2.0	24	91	0	76	19	19	23	38	1.93
6824648--6824689	8	4.9	8	86	13	57	2	14	2	80	0.90
6824648--6824689	16	2.4	19	88	11	63	2	14	2	80	0.90
6827325--6827481	83	1.9	83	91	0	260	24	29	17	29	1.97
6829647--6829722	36	2.1	36	97	0	143	43	14	10	31	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6831859--6831886	13	2.2	13	100	0	56	39	17	21	21	1.93
6834560--6834608	24	2.0	25	92	4	82	40	2	6	51	1.38
6837725--6837786	23	2.7	23	84	0	79	17	24	20	37	1.94
6844623--6844735	21	5.3	21	78	2	82	24	14	22	38	1.91
6844751--6844813	23	2.7	23	95	0	108	14	26	25	33	1.94
6846308--6846377	32	2.1	34	84	5	90	57	10	8	24	1.59
6846687--6846804	60	2.0	60	81	8	143	33	17	4	44	1.68
6848961--6849242	137	2.1	136	84	6	356	41	13	14	29	1.85
6850877--6850956	40	2.1	39	90	4	126	23	10	8	57	1.59
6852958--6853119	82	2.0	82	92	0	270	30	3	34	31	1.73
6853283--6853334	26	2.0	26	100	0	104	30	3	23	42	1.72
6853710--6853752	21	2.0	21	86	0	59	53	18	0	27	1.45
6854885--6854989	37	2.8	37	85	0	138	41	14	14	29	1.85
6855344--6855383	18	2.3	18	83	8	57	25	5	2	67	1.23
6855870--6855895	2	13.0	2	100	0	52	50	0	0	50	1.00
6859970--6860501	183	2.9	182	95	1	940	27	21	21	30	1.98
6861662--6861775	36	3.2	34	71	9	86	27	15	13	43	1.84
6861646--6861820	72	2.4	75	85	10	220	28	17	12	42	1.85
6861914--6861988	39	1.9	39	83	5	98	26	22	13	37	1.91
6861891--6862210	106	3.1	105	90	3	497	30	20	12	37	1.89
6862110--6862188	36	2.2	36	88	0	113	21	20	15	43	1.88
6862304--6862857	105	5.3	105	90	3	850	33	26	17	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6863399--6863502	37	2.8	37	85	0	127	42	14	13	29	1.84
6863915--6864089	72	2.4	75	83	8	200	28	18	12	41	1.87
6863915--6864024	36	3.1	36	71	5	98	30	16	9	44	1.78
6864160--6864478	105	3.1	104	91	3	502	31	19	11	36	1.88
6864378--6864453	36	2.1	36	90	0	116	22	21	15	40	1.90
6864572--6865125	105	5.3	105	90	3	832	33	26	18	22	1.96
6865665--6865769	37	2.8	37	85	0	138	41	14	14	29	1.85
6866223--6866339	36	3.1	36	69	4	90	28	18	14	38	1.90
6866182--6866356	72	2.4	75	83	8	209	27	18	12	41	1.86
6866198--6866393	73	2.7	72	79	8	159	27	17	14	41	1.88
6866427--6866743	105	3.1	104	92	2	514	30	20	12	36	1.89
6866645--6866720	36	2.1	36	90	0	116	22	21	15	40	1.90
6866839--6867392	105	5.3	105	88	2	803	33	25	17	22	1.96
6867933--6868037	37	2.8	37	80	5	122	42	14	13	29	1.83
6868394--6868431	17	2.2	17	90	0	58	26	5	2	65	1.27
6868677--6868739	9	7.2	9	75	10	51	22	3	1	73	1.07
6868924--6868967	2	22.0	2	95	0	79	47	0	0	52	1.00
6869826--6869851	2	13.0	2	100	0	52	50	0	0	50	1.00
6870497--6870534	20	1.9	19	85	15	51	47	18	5	28	1.70
6873590--6873625	17	2.1	17	94	0	63	41	0	0	58	0.98
6874812--6874847	2	18.0	2	100	0	72	50	0	0	50	1.00
6874853--6874878	13	2.0	13	100	0	52	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6874896--6874960	26	2.4	26	82	5	76	50	0	0	49	1.00
6878782--6879418	6	109.8	6	88	10	965	66	0	0	33	0.92
6884901--6884947	19	2.4	19	89	3	67	61	2	0	36	1.08
6884942--6884966	13	1.9	13	100	0	50	60	0	8	32	1.26
6885580--6885664	3	27.7	3	80	9	91	37	2	0	60	1.10
6885578--6885664	19	4.7	18	81	5	93	39	2	0	58	1.11
6886989--6887034	22	2.1	22	84	8	58	45	0	0	54	0.99
6889422--6889461	15	2.7	15	88	3	55	22	12	12	52	1.72
6889500--6889560	27	2.3	26	82	2	77	21	11	8	59	1.58
6893669--6894141	83	5.7	83	93	1	743	27	12	22	37	1.90
6895255--6895416	74	2.2	74	84	4	202	33	17	20	28	1.95
6896704--6896758	22	2.5	22	96	0	101	34	14	14	36	1.87
6897227--6898479	113	11.2	112	87	3	1617	37	13	19	29	1.90
6897227--6898479	338	3.7	338	89	2	1759	37	13	19	29	1.90
6898214--6898419	100	2.1	100	91	1	333	37	11	21	29	1.89
6898870--6898963	3	30.7	3	80	8	100	38	2	0	59	1.09
6900302--6900345	24	1.9	24	86	9	65	47	0	0	52	1.00
6900302--6900345	22	2.0	22	86	8	63	47	0	0	52	1.00
6901507--6901555	23	2.1	23	96	0	89	28	28	22	20	1.98
6903239--6903283	21	2.1	21	87	0	63	15	24	28	31	1.96
6903810--6903863	24	2.3	23	90	3	81	51	12	9	25	1.70
6904198--6904240	17	2.6	16	78	7	50	39	25	0	34	1.56
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6906565--6906648	23	3.7	23	88	0	132	26	26	26	21	1.99
6908340--6908384	21	2.1	21	87	0	63	15	24	28	31	1.96
6911643--6911705	11	5.9	11	69	14	51	55	1	1	41	1.19
6914105--6914155	13	3.9	12	82	14	57	68	1	0	29	1.00
6914113--6914154	14	3.1	14	83	13	52	66	2	0	30	1.04
6920854--6921049	101	1.9	101	96	0	365	21	7	37	33	1.81
6924142--6924182	21	2.0	21	90	9	68	41	24	9	24	1.85
6924172--6924237	34	1.9	34	100	0	132	59	0	0	40	0.98
6927694--6927807	20	5.7	20	93	0	201	29	28	20	21	1.98
6927656--6927808	60	2.6	59	85	3	198	33	26	20	19	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49