genome.fa.s8243.2.7.7.80.10.50.1000.44.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01008243.1 Hibiscus syriacus cultivar Beakdansim tig00110893_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10265705

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   

This is table  44  of  49  ( 5786 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9076387--9076688	45	6.8	45	83	6	339	40	9	20	29	1.84
9077413--9077892	240	2.0	238	94	4	844	32	20	10	37	1.86
9077841--9078005	85	2.0	83	94	5	291	42	10	13	33	1.79
9081271--9081331	2	30.5	2	100	0	122	50	0	0	49	1.00
9082249--9082297	23	2.1	23	100	0	98	44	8	8	38	1.64
9088083--9088173	45	2.0	45	100	0	182	19	37	8	34	1.83
9091948--9091995	14	3.1	15	77	16	62	50	14	18	16	1.79
9094381--9094418	18	2.1	18	100	0	76	39	5	5	50	1.48
9096891--9096987	29	3.4	29	72	9	92	58	10	12	18	1.61
9097752--9097804	18	2.9	18	94	0	88	26	30	22	20	1.98
9097838--9097892	17	3.2	18	89	5	78	25	27	23	23	2.00
9104537--9104585	18	2.7	18	96	0	89	28	34	20	16	1.94
9107332--9107383	12	4.1	13	81	13	56	65	1	3	28	1.21
9107351--9107383	3	11.0	3	100	0	66	66	0	0	33	0.92
9116708--9116927	111	2.0	111	92	1	372	44	10	8	36	1.70
9117207--9117332	50	2.5	49	80	10	155	22	26	32	18	1.97
9117833--9117867	6	5.8	6	100	0	70	82	0	0	17	0.66
9130279--9130318	18	2.2	18	86	8	55	20	20	20	40	1.92
9136858--9136913	23	2.4	23	94	5	96	58	3	10	26	1.48
9141444--9141479	17	2.2	17	90	5	56	38	13	0	47	1.44
9144974--9145018	18	2.3	20	75	25	51	51	4	0	44	1.21
9144963--9145033	27	2.6	27	84	10	83	47	2	1	47	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9145213--9145263	4	12.8	4	91	0	57	49	31	1	17	1.58
9145207--9145263	12	4.8	12	77	0	60	49	31	1	17	1.57
9145327--9145351	2	12.5	2	100	0	50	52	0	0	48	1.00
9146084--9146125	16	2.6	16	96	0	75	11	9	26	52	1.68
9147152--9147710	130	4.3	129	76	9	429	33	17	15	34	1.91
9148055--9148216	76	2.1	76	87	2	236	37	9	21	31	1.86
9148098--9148222	38	3.3	38	68	12	103	36	9	20	34	1.85
9151323--9151354	11	2.9	11	100	0	64	37	9	28	25	1.87
9161689--9161735	21	2.2	22	84	3	60	57	2	0	40	1.11
9162768--9162821	22	2.5	21	79	8	65	20	25	18	35	1.95
9162828--9162902	21	3.6	21	75	10	82	33	18	22	25	1.97
9162811--9162903	41	2.3	40	87	5	125	33	18	22	25	1.97
9162811--9163044	20	11.6	20	72	9	127	34	18	20	26	1.96
9162933--9163026	41	2.3	41	85	1	118	40	18	20	21	1.92
9163587--9163631	19	2.4	19	88	0	63	51	26	13	8	1.70
9163649--9163697	14	3.6	14	81	10	66	10	24	24	40	1.86
9163642--9163694	26	2.0	26	96	0	97	9	26	22	41	1.84
9163689--9163738	20	2.5	20	83	6	57	14	24	22	40	1.90
9167210--9167246	13	2.8	13	91	0	65	35	0	18	45	1.50
9167352--9167424	33	2.2	33	95	2	130	43	21	23	10	1.84
9167369--9167438	14	4.7	14	77	19	79	44	22	24	8	1.81
9167368--9167471	46	2.2	47	89	3	174	47	22	22	8	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9167420--9167495	33	2.3	32	84	8	100	51	23	17	7	1.71
9167460--9167505	19	2.4	19	88	0	65	50	26	10	13	1.74
9167508--9167632	19	7.4	19	63	24	82	15	22	19	43	1.88
9167508--9167632	33	3.8	32	85	8	180	15	22	19	43	1.88
9167498--9167631	66	2.0	67	94	1	234	16	22	19	41	1.90
9167582--9167910	165	2.0	164	99	0	649	30	18	16	34	1.93
9170064--9170097	14	2.4	14	95	5	59	0	14	0	85	0.60
9170273--9170326	24	2.2	24	90	0	81	40	20	16	22	1.91
9171147--9171226	20	4.0	20	77	9	72	33	22	20	23	1.97
9171186--9171234	20	2.5	20	79	0	71	36	22	18	22	1.95
9171446--9171493	20	2.4	20	100	0	96	35	27	22	14	1.93
9172084--9172127	21	2.1	21	100	0	88	38	29	22	9	1.85
9173067--9173172	41	2.6	41	83	1	122	21	16	38	22	1.93
9173597--9173693	19	5.6	19	68	22	88	14	19	19	46	1.84
9173600--9173693	33	2.8	33	95	0	161	14	19	19	46	1.84
9173678--9173732	20	2.8	19	83	8	65	16	23	23	36	1.94
9174492--9174558	20	3.4	20	81	2	73	38	23	22	14	1.92
9174547--9174605	14	3.9	14	76	20	64	49	23	16	10	1.77
9174531--9174622	33	2.8	33	98	0	175	47	21	18	11	1.80
9174531--9174627	19	5.6	19	71	22	97	46	21	19	12	1.83
9174662--9174716	20	2.8	19	83	8	65	16	23	23	36	1.94
9175071--9175124	21	2.6	21	84	0	72	24	37	14	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9175071--9175151	42	1.9	42	84	0	108	23	38	16	22	1.93
9176557--9176595	14	2.8	14	84	0	51	35	0	17	46	1.49
9176712--9176779	19	3.6	19	95	0	127	48	14	20	16	1.81
9176817--9176892	20	3.8	20	72	6	73	17	19	21	42	1.90
9176805--9176908	40	2.9	34	75	15	100	15	21	22	41	1.90
9177105--9177155	20	2.5	20	77	0	66	25	17	19	37	1.94
9177182--9177237	20	2.8	21	83	8	71	25	21	16	37	1.93
9177430--9177463	12	2.9	12	86	4	52	17	41	5	35	1.74
9178239--9178263	12	2.1	12	100	0	50	72	0	28	0	0.86
9180552--9180678	33	3.8	33	86	4	184	43	19	22	14	1.88
9180593--9180682	19	5.3	19	65	24	65	42	20	24	13	1.87
9180553--9180685	66	2.0	66	94	0	230	42	19	21	16	1.89
9180678--9180806	19	7.3	19	86	10	113	11	17	24	47	1.80
9180712--9180751	14	2.9	14	100	0	80	7	15	27	50	1.70
9180726--9180838	33	3.3	33	83	11	145	11	20	21	46	1.81
9180733--9180838	38	2.9	37	86	9	139	12	19	19	48	1.80
9180945--9180981	14	2.6	14	91	0	65	45	24	0	29	1.53
9182335--9182401	21	3.2	21	68	4	55	19	20	35	23	1.95
9182675--9182860	91	2.0	94	89	5	290	48	18	11	21	1.78
9184568--9184702	33	3.9	33	81	10	135	42	22	22	13	1.88
9184605--9184707	19	5.7	19	79	11	126	43	21	21	13	1.86
9184543--9184708	71	2.3	73	83	3	219	42	20	22	14	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9185289--9185398	20	5.4	20	79	4	114	22	20	18	38	1.94
9185307--9185400	41	2.3	40	85	1	116	23	21	15	39	1.92
9185443--9185506	21	3.1	21	73	13	78	23	21	17	37	1.94
9185517--9185565	21	2.3	22	79	6	66	36	16	26	20	1.93
9187085--9187129	22	1.9	23	86	13	65	62	6	15	15	1.52
9189874--9189915	17	2.5	17	96	0	75	16	16	19	47	1.83
9193321--9193364	13	3.4	13	87	0	61	34	15	20	29	1.94
9193313--9193364	26	2.0	26	88	0	77	34	15	21	28	1.94
9194314--9194349	18	2.1	18	94	5	65	38	13	27	19	1.90
9195932--9195990	25	2.4	25	77	5	66	30	18	6	44	1.76
9197752--9197828	34	2.3	34	93	0	127	25	12	32	28	1.93
9199936--9200003	20	3.3	20	75	4	82	36	26	14	22	1.93
9199934--9200024	20	4.4	20	70	4	65	40	23	14	21	1.90
9199934--9200077	41	3.4	41	85	9	198	38	22	15	22	1.93
9199939--9200073	46	3.0	46	89	5	199	37	23	16	22	1.93
9199964--9200076	21	5.2	21	65	10	75	38	22	16	22	1.93
9200079--9200128	21	2.5	19	84	12	73	24	24	22	30	1.99
9200087--9200137	21	2.4	21	96	0	93	19	23	27	29	1.98
9200468--9200493	6	4.3	6	100	0	52	34	50	15	0	1.45
9200831--9200887	19	3.0	19	94	0	96	36	26	5	31	1.79
9200892--9200952	21	3.0	21	82	2	70	22	18	26	32	1.97
9204706--9204788	41	2.0	41	90	4	132	36	22	14	26	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9222107--9222230	29	4.2	30	76	15	98	29	20	8	41	1.82
9222107--9222174	30	2.3	30	87	7	95	27	20	8	42	1.82
9233220--9233386	41	4.0	41	91	5	196	16	21	23	38	1.93
9233245--9233317	20	3.6	20	78	10	94	12	24	24	38	1.90
9233220--9233386	82	2.0	83	86	7	234	16	21	23	38	1.93
9233330--9233395	19	3.3	19	71	19	62	16	19	21	42	1.89
9233248--9233402	41	3.8	41	93	3	217	16	20	23	40	1.91
9233495--9233535	5	8.4	5	97	2	75	36	21	41	0	1.54
9234020--9234071	5	9.6	5	97	2	68	0	19	53	26	1.45
9234023--9234075	6	9.5	6	97	2	78	0	16	54	28	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49