genome.fa.s329.2.7.7.80.10.50.1000.19.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold329
Parameters: 2 7 7 80 10 50 1000
Length:  4121247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  19  of  25  ( 2930 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2963582--2963807	50	4.5	50	78	2	186	41	19	15	23	1.90
2963576--2963752	49	3.6	49	80	4	160	41	18	17	23	1.90
2963576--2963856	50	5.6	50	75	7	185	40	17	17	25	1.90
2964313--2964370	16	3.7	16	80	13	59	48	1	1	48	1.22
2964598--2964673	20	3.9	20	72	10	59	47	0	2	50	1.15
2964610--2964677	28	2.5	28	79	13	70	47	0	1	51	1.09
2964616--2964704	44	2.0	46	80	12	105	48	0	1	50	1.08
2965239--2965323	29	2.9	29	76	10	77	28	3	4	63	1.31
2965524--2965608	17	5.2	16	70	21	52	42	0	1	56	1.07
2965527--2965608	32	2.5	34	82	11	107	42	0	1	56	1.07
2965524--2965607	7	10.1	8	71	20	57	42	0	1	55	1.07
2965958--2966073	36	3.1	39	75	19	131	56	0	0	41	1.11
2966341--2966382	21	2.0	21	90	0	66	33	0	4	61	1.17
2969955--2970113	87	1.8	87	82	8	207	43	19	10	26	1.83
2972188--2972256	20	3.5	20	79	0	75	36	13	10	40	1.78
2974011--2974184	52	3.3	52	75	9	149	33	12	24	29	1.91
2974167--2974242	27	2.8	28	85	2	100	21	18	34	26	1.96
2974117--2974639	107	4.9	107	67	13	364	29	13	27	29	1.94
2974226--2974579	105	3.4	105	71	12	364	30	11	26	31	1.91
2974008--2974639	212	3.0	212	92	1	1020	31	12	26	29	1.93
2974226--2974608	51	7.3	51	70	13	240	30	12	26	30	1.93
2974379--2974450	27	2.6	28	84	2	92	22	20	33	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2974627--2974745	51	2.3	53	85	7	154	33	11	22	31	1.90
2974409--2974758	185	1.9	184	96	1	648	30	11	27	30	1.92
2976538--2976604	33	2.0	33	85	0	89	43	16	13	26	1.85
2976624--2976691	19	3.9	18	76	23	83	38	14	11	35	1.83
2976646--2976670	13	1.9	13	100	0	50	32	16	16	36	1.90
2976627--2976689	32	2.0	32	96	0	117	36	15	12	34	1.86
2976727--2976784	21	2.7	22	84	7	84	32	13	15	37	1.87
2977237--2977449	119	1.8	116	80	10	254	39	15	23	20	1.92
2977591--2977678	26	3.3	26	67	25	74	20	18	34	27	1.96
2977433--2978373	55	16.3	59	83	8	995	23	20	29	26	1.99
2977482--2978371	469	1.9	461	86	5	1256	23	20	29	26	1.99
2977433--2978350	231	4.0	230	84	7	1188	23	20	29	26	1.99
2979362--2979401	13	3.0	13	92	3	62	0	2	12	85	0.71
2979367--2979401	18	1.9	18	94	0	61	0	0	14	85	0.59
2991918--2992089	52	3.3	52	77	6	161	34	13	23	28	1.93
2992072--2992147	27	2.8	27	85	2	98	25	21	30	23	1.99
2992022--2992379	107	3.4	107	70	12	349	29	13	27	29	1.95
2991918--2992478	212	2.7	213	92	1	900	32	12	25	29	1.93
2992131--2992465	51	6.3	52	69	13	204	31	12	25	30	1.92
2991920--2992473	105	5.2	105	69	13	350	33	12	24	29	1.93
2992287--2992359	27	2.7	27	89	6	103	23	19	31	26	1.98
2994821--2994846	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2994800--2994866	33	2.0	33	88	0	98	43	16	14	25	1.86
2994886--2994953	19	3.9	18	76	23	83	38	14	11	35	1.83
2994908--2994932	13	1.9	13	100	0	50	32	16	16	36	1.90
2994889--2994951	32	2.0	32	96	0	117	36	15	12	34	1.86
2994991--2995065	21	3.6	21	89	3	107	36	17	12	34	1.87
3007498--3007537	12	3.3	12	89	0	62	82	12	0	5	0.82
3008748--3009052	29	10.8	28	88	2	342	31	30	15	21	1.95
3008791--3009052	56	4.6	57	89	3	377	30	30	16	21	1.95
3009039--3009122	44	1.9	44	90	4	134	35	28	13	22	1.92
3010105--3010201	20	4.9	20	83	5	117	30	10	13	45	1.77
3011107--3011147	21	2.0	22	85	9	59	21	19	9	48	1.77
3016337--3016363	2	13.5	2	100	0	54	51	0	0	48	1.00
3016717--3016768	18	2.8	19	77	11	54	46	1	0	51	1.12
3017246--3017279	17	2.0	17	88	0	50	52	0	0	47	1.00
3017972--3018210	75	3.2	75	82	6	279	34	23	24	17	1.96
3020082--3020112	16	1.9	16	93	0	53	77	0	9	12	0.99
3020748--3020792	17	2.6	17	82	0	54	66	0	8	24	1.20
3022206--3022235	2	15.0	2	100	0	60	50	0	0	50	1.00
3022421--3022457	2	19.0	2	94	5	67	48	0	0	51	1.00
3031890--3031931	22	2.0	21	85	4	57	71	9	7	11	1.31
3036337--3036411	28	2.7	28	93	4	125	26	21	30	21	1.98
3036403--3036514	51	2.2	51	93	0	188	33	12	23	30	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3036515--3036643	51	2.6	50	81	6	154	34	10	24	29	1.90
3036367--3036722	130	2.7	129	85	4	466	33	12	25	29	1.92
3036566--3036783	79	2.7	78	81	8	251	37	9	22	29	1.86
3039170--3039224	20	2.8	20	88	0	92	43	12	16	27	1.84
3039924--3040092	42	3.8	43	75	14	157	43	13	23	20	1.86
3040120--3040662	61	9.1	61	79	8	582	27	19	27	25	1.99
3040126--3040682	178	3.1	178	88	1	825	27	19	26	26	1.99
3041770--3041821	1	52.0	1	80	0	59	1	0	7	90	0.53
3041771--3041821	9	5.7	9	84	15	70	1	0	7	90	0.53
3041770--3041821	17	3.1	17	81	15	72	1	0	7	90	0.53
3041758--3041821	27	2.4	28	84	10	80	1	4	6	87	0.72
3050368--3050402	17	2.1	17	100	0	70	42	11	17	28	1.83
3051628--3051706	28	2.8	28	88	3	115	29	20	29	21	1.98
3051694--3051804	51	2.2	51	88	3	161	35	10	23	30	1.89
3051825--3051935	51	2.2	51	90	0	168	31	12	26	29	1.93
3051648--3052010	130	2.8	127	82	7	403	34	11	25	28	1.90
3051871--3052074	79	2.6	79	81	1	221	35	11	23	29	1.90
3055848--3055905	1	58.0	1	78	0	62	0	3	6	89	0.57
3055832--3055905	8	9.4	8	82	10	64	0	8	5	86	0.70
3055832--3055905	17	4.4	16	80	14	69	0	8	5	86	0.70
3055846--3055905	23	2.8	21	83	16	79	0	5	6	88	0.63
3066541--3066659	52	2.3	51	86	4	159	42	12	15	29	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3069074--3069615	50	10.9	49	70	9	256	38	18	17	24	1.92
3073893--3073945	26	2.0	26	88	0	79	43	11	9	35	1.73
3074047--3074333	154	1.9	154	82	4	371	44	16	12	26	1.83
3076390--3076416	14	1.9	14	100	0	54	59	11	0	29	1.32
3077237--3077290	22	2.5	20	82	11	63	9	25	29	35	1.87
3077942--3077985	21	2.1	21	83	8	54	61	0	0	38	0.96
3082046--3082084	2	19.5	2	89	0	60	51	5	0	43	1.24
3083896--3083921	13	2.0	13	100	0	52	30	15	15	38	1.88
3086451--3086489	13	3.0	13	96	0	69	35	15	17	30	1.91
3086475--3086553	20	3.7	20	78	15	77	44	15	15	25	1.85
3090397--3090441	21	2.1	21	84	8	56	22	20	4	53	1.63
3092652--3092677	13	2.0	13	100	0	52	30	15	15	38	1.88
3106974--3107033	28	2.1	28	81	0	66	13	36	3	46	1.60
3107993--3108045	24	2.1	25	82	10	63	64	9	0	26	1.24
3108263--3108317	15	3.8	14	78	11	58	41	3	1	52	1.29
3111755--3111807	20	2.6	21	79	11	65	37	9	20	32	1.85
3111864--3111986	51	2.4	52	86	1	158	30	14	13	42	1.83
3115026--3115051	13	2.0	13	100	0	52	30	15	15	38	1.88
3115006--3115069	32	2.0	33	90	3	103	28	14	18	39	1.90
3115006--3115076	19	4.0	18	72	25	62	26	12	21	39	1.89
3117596--3117634	13	3.0	13	88	0	60	38	15	15	30	1.88
3121514--3121558	21	2.1	21	84	8	56	22	20	4	53	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3127159--3127196	20	1.9	20	94	0	67	44	10	13	31	1.77
3130770--3130820	23	2.2	23	82	6	68	84	0	11	3	0.75
3130770--3130821	11	4.5	11	76	21	52	84	0	11	3	0.74
3130767--3130822	29	1.9	29	85	7	78	82	0	12	5	0.83
3131528--3131834	58	5.3	58	74	7	212	29	12	14	43	1.82
3131901--3132085	79	2.3	80	76	10	193	29	14	16	40	1.87
3132947--3132988	17	2.6	16	78	17	50	35	14	0	50	1.43
3145590--3145626	12	2.9	13	84	8	58	48	0	5	45	1.25
3146669--3146700	16	2.1	15	94	5	55	68	0	6	25	1.12
3148375--3148429	20	2.7	20	91	2	83	45	10	12	30	1.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25