genome.fa.s329.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold329
Parameters: 2 7 7 80 10 50 1000
Length:  4121247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  23  of  25  ( 2930 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3619711--3619746	16	2.2	16	90	0	54	30	5	0	63	1.17
3629217--3629449	88	2.7	89	85	2	319	39	13	14	32	1.85
3629477--3630296	88	9.4	88	76	6	586	38	14	15	31	1.88
3629477--3630228	176	4.3	174	77	7	692	38	13	15	31	1.87
3632981--3633118	50	2.8	50	84	2	170	26	18	15	39	1.91
3635457--3635743	78	3.7	77	77	6	267	28	22	12	36	1.91
3635507--3635719	79	2.7	79	83	2	241	30	21	9	38	1.86
3640673--3640723	18	2.8	18	86	13	70	84	3	5	5	0.87
3641917--3641978	30	2.1	30	81	0	70	25	30	11	32	1.91
3641982--3642829	62	13.8	61	79	4	878	25	23	18	32	1.97
3641982--3642829	123	6.9	123	79	6	794	25	23	18	32	1.97
3641981--3642829	185	4.6	185	80	3	913	25	24	18	32	1.97
3642687--3642969	146	1.9	147	87	0	415	25	25	15	32	1.96
3642749--3642903	84	1.8	85	92	1	267	23	24	16	36	1.94
3642834--3643009	62	2.9	62	84	1	230	26	24	18	31	1.97
3642957--3643093	65	2.1	65	84	0	175	24	21	14	39	1.91
3643079--3643589	44	11.8	44	76	8	339	21	23	10	44	1.83
3643266--3643574	170	1.8	169	82	3	397	22	22	10	44	1.83
3643479--3643589	42	2.6	43	84	7	145	22	23	10	43	1.84
3646634--3646999	78	4.7	78	79	6	375	29	23	12	34	1.91
3646634--3646999	157	2.3	156	81	4	416	29	23	12	34	1.91
3648913--3648961	21	2.4	21	80	6	57	77	8	4	10	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3652799--3652883	30	2.8	30	73	10	75	51	0	1	47	1.08
3654846--3654905	22	2.6	23	78	10	59	26	1	3	68	1.15
3654862--3654916	22	2.4	23	84	6	76	27	1	3	67	1.17
3654869--3654911	11	4.0	10	82	14	50	23	2	0	74	0.93
3655131--3655155	9	2.8	9	100	0	50	44	44	12	0	1.41
3655864--3655901	18	2.0	20	90	10	62	42	0	7	50	1.31
3655891--3655976	32	2.7	31	75	13	93	51	1	2	45	1.21
3656074--3656114	14	2.8	14	85	7	55	41	0	2	56	1.13
3656590--3656615	13	2.0	13	100	0	52	61	7	7	23	1.49
3656823--3656855	11	2.8	12	86	9	50	27	0	0	72	0.85
3657806--3657870	12	5.6	12	80	10	73	4	1	9	84	0.82
3657804--3657870	11	5.9	11	75	13	64	5	1	8	83	0.86
3671525--3671598	20	3.7	20	82	7	87	40	10	14	33	1.81
3683209--3683290	14	6.2	13	75	8	69	36	12	14	36	1.84
3683212--3683288	26	2.9	27	77	12	79	38	12	15	32	1.86
3683305--3683830	28	18.6	28	82	6	580	30	28	16	24	1.96
3684344--3684388	22	2.0	22	100	0	90	22	4	22	51	1.66
3688944--3689031	25	3.3	27	71	25	89	61	5	7	25	1.46
3690438--3690467	4	7.5	4	92	0	51	23	0	3	73	0.98
3691213--3691248	3	11.7	3	94	5	63	66	0	2	30	1.06
3697430--3697461	14	2.3	14	94	0	55	28	6	3	62	1.34
3698142--3698173	2	16.0	2	100	0	64	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3701088--3701167	28	2.9	28	78	17	94	23	7	23	45	1.78
3703733--3703778	21	2.1	22	84	4	58	30	19	30	19	1.97
3713068--3713257	96	2.0	96	84	0	245	36	12	21	29	1.90
3716421--3716459	20	1.9	20	89	5	60	38	23	15	23	1.92
3716450--3716511	32	1.9	32	87	9	90	32	16	12	38	1.86
3717806--3717864	27	2.2	27	93	6	102	10	13	5	71	1.29
3723693--3723740	21	2.3	20	79	10	53	31	22	4	41	1.73
3725182--3725213	12	2.7	12	95	0	55	31	9	28	31	1.88
3725521--3725606	45	1.9	45	81	11	106	39	2	26	31	1.69
3726145--3726197	20	2.7	20	90	0	88	37	11	15	35	1.83
3726255--3726318	32	2.0	33	87	3	94	31	15	15	37	1.89
3726370--3726597	63	3.6	63	66	14	180	35	15	17	30	1.92
3726308--3726586	126	2.2	126	92	1	461	34	16	17	30	1.93
3727356--3727446	26	3.2	27	69	19	85	38	1	8	51	1.40
3727348--3727472	59	2.1	60	95	1	225	40	2	8	49	1.45
3727366--3727461	27	3.4	27	68	19	70	36	2	8	53	1.43
3727601--3727644	21	2.0	22	86	4	63	40	22	2	34	1.67
3728510--3728549	15	2.7	14	92	7	62	0	20	0	80	0.72
3728655--3728710	25	2.2	25	80	0	67	5	17	32	44	1.72
3729035--3729082	24	1.9	25	87	8	71	20	18	8	52	1.71
3729512--3729575	3	22.0	3	93	6	114	31	0	0	68	0.90
3730215--3730447	127	1.8	126	81	4	290	42	15	24	17	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3730176--3730526	84	4.1	84	80	6	309	42	16	24	16	1.88
3730180--3730526	42	8.2	42	75	6	231	41	16	24	17	1.89
3737836--3738126	148	2.0	147	81	5	347	37	22	16	23	1.94
3738035--3738443	155	2.6	154	83	5	473	41	19	15	24	1.89
3739525--3739560	10	3.6	10	84	0	54	8	13	0	77	0.98
3741660--3741835	85	2.1	85	81	4	203	31	18	30	19	1.96
3741722--3742105	127	3.0	126	74	7	348	33	17	26	21	1.96
3741660--3742150	42	11.8	42	70	10	193	33	17	26	21	1.96
3747215--3747261	23	2.0	24	84	12	62	59	19	4	17	1.53
3748616--3748657	21	2.0	21	85	0	57	23	28	4	42	1.74
3749752--3749818	37	1.9	35	88	11	102	29	25	11	32	1.92
3750374--3750429	20	2.8	19	89	5	76	30	19	14	35	1.91
3751947--3751997	23	2.2	23	86	6	68	5	17	0	76	0.98
3751963--3752004	17	2.6	16	88	7	66	2	14	0	83	0.75
3751955--3751999	15	2.9	15	81	15	56	4	15	0	80	0.87
3751963--3752004	16	2.6	16	88	3	66	2	14	0	83	0.75
3755039--3755862	156	5.3	155	77	6	650	39	19	16	24	1.91
3755067--3755780	313	2.3	310	82	4	810	39	19	16	24	1.91
3756957--3756991	10	3.5	10	84	0	52	8	14	0	77	0.99
3757560--3758139	166	3.5	163	77	10	523	50	8	11	29	1.68
3757642--3758095	166	2.7	165	82	6	528	52	7	11	28	1.65
3770448--3770846	159	2.5	162	78	5	438	36	12	12	37	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3774194--3774249	21	2.8	20	71	10	51	33	16	16	33	1.91
3774971--3775028	28	2.1	28	83	0	71	15	20	25	37	1.92
3774957--3775162	67	3.1	67	80	2	184	18	17	26	37	1.93
3775367--3775779	142	2.9	143	77	8	424	29	13	25	31	1.93
3775853--3776002	29	5.2	29	84	10	150	27	16	25	31	1.96
3775857--3776002	57	2.5	57	81	9	165	27	16	24	31	1.96
3776311--3776392	12	6.6	12	81	5	92	35	18	13	32	1.90
3776372--3776423	14	3.8	14	87	2	70	28	17	15	38	1.90
3776311--3776423	12	8.7	14	80	8	75	33	16	14	35	1.89
3776409--3776475	28	2.4	28	97	0	125	25	11	20	41	1.87
3784797--3784861	19	3.8	18	75	24	77	32	12	16	38	1.86
3784799--3784869	32	2.2	32	94	0	124	33	12	16	36	1.87
3784818--3784842	13	1.9	13	100	0	50	36	16	16	32	1.90
3784893--3785042	52	2.9	52	93	1	255	36	18	16	28	1.93
3787163--3787216	27	2.1	26	86	10	76	24	38	16	20	1.92
3787355--3787394	20	2.0	20	100	0	80	30	20	5	45	1.72
3788500--3788624	66	1.9	66	91	0	205	29	23	13	33	1.93
3795517--3795570	20	2.8	20	94	2	92	37	11	18	33	1.86
3795591--3795661	20	3.5	19	79	11	70	36	16	14	32	1.89
3800687--3800751	19	3.8	18	75	24	77	32	12	16	38	1.86
3800708--3800732	13	1.9	13	100	0	50	36	16	16	32	1.90
3800689--3800759	32	2.2	32	97	0	133	32	12	18	36	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3800837--3800965	52	2.5	52	96	0	240	35	18	17	27	1.94
3804144--3804340	91	2.2	90	82	3	225	38	16	11	32	1.85
3806497--3806545	24	2.0	24	100	0	98	38	20	8	32	1.82
3809258--3809291	17	2.0	17	100	0	68	47	11	17	23	1.81
3810317--3810496	48	3.8	47	82	6	179	36	12	12	38	1.82
3810309--3810503	96	2.0	95	81	8	227	35	13	12	38	1.82
3810362--3810505	48	3.0	48	87	2	200	37	12	11	38	1.80
3810971--3811009	20	2.0	20	94	0	69	20	46	10	23	1.81
3812972--3813070	51	1.9	51	87	4	146	34	10	15	40	1.80
3813967--3813999	16	2.1	16	88	11	50	48	3	0	48	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25