genome.fa.s329.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold329
Parameters: 2 7 7 80 10 50 1000
Length:  4121247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  3  of  25  ( 2930 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318284--318378	29	3.2	28	69	24	79	25	12	14	47	1.80
318226--318380	59	2.6	59	83	6	197	25	11	16	47	1.80
327221--327268	20	2.3	20	80	13	53	6	39	2	52	1.39
328051--328075	9	2.8	9	100	0	50	16	0	0	84	0.63
328069--328117	14	3.4	15	81	13	50	2	12	2	83	0.82
328079--328118	13	3.2	13	86	13	66	0	17	0	82	0.67
328079--328116	12	3.2	12	85	14	60	0	15	0	84	0.63
329006--329042	13	2.8	13	91	0	56	32	18	13	35	1.90
329837--329918	32	2.6	32	98	0	155	30	29	3	36	1.75
329924--329970	22	2.1	23	88	4	69	23	17	6	53	1.66
333194--333388	78	2.5	78	85	0	246	30	16	27	25	1.97
333153--333385	79	2.9	78	80	3	270	31	14	27	27	1.95
333340--333416	28	2.8	28	85	0	91	22	19	35	23	1.96
333399--333619	51	4.3	51	80	2	210	33	11	24	29	1.91
333290--333785	261	1.9	261	94	0	877	31	12	26	28	1.93
333662--333782	52	2.4	51	84	1	152	33	10	23	32	1.89
336134--336175	21	2.0	21	100	0	84	28	19	9	42	1.82
336192--336243	13	3.5	13	73	26	50	34	19	13	32	1.90
336192--336264	32	2.3	32	92	4	121	34	17	12	35	1.88
336863--336959	42	2.3	42	81	8	110	46	6	25	21	1.74
336966--337154	42	4.4	43	77	12	174	39	14	25	19	1.90
336966--337154	89	2.2	84	84	8	229	39	14	25	19	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337140--337691	55	9.4	56	77	11	429	25	20	27	25	1.99
337196--337658	116	4.0	117	86	4	599	24	20	28	26	1.99
343192--343417	79	2.9	78	77	7	224	32	15	26	25	1.95
343369--343445	28	2.8	28	84	4	84	24	19	32	23	1.97
343429--343823	52	7.6	51	72	9	249	32	11	26	29	1.92
343318--343812	262	1.9	262	94	0	873	31	13	27	28	1.94
346237--346288	13	3.5	13	73	26	50	34	19	13	32	1.90
346245--346313	19	4.1	18	75	24	78	36	17	11	34	1.86
346237--346307	32	2.2	32	95	5	126	35	19	12	32	1.90
351557--351581	13	1.9	13	100	0	50	36	16	16	32	1.90
363628--363677	20	2.5	20	87	6	66	38	16	12	34	1.85
363685--363709	13	1.9	13	100	0	50	32	16	16	36	1.90
364536--364733	101	1.9	103	82	2	247	35	14	22	26	1.93
364830--365081	32	7.9	31	84	7	312	21	18	29	30	1.97
366654--366696	14	3.2	13	78	21	52	2	0	16	81	0.79
366646--366696	16	3.4	16	74	17	56	1	1	15	80	0.89
371616--371766	52	2.9	52	92	1	239	29	16	18	35	1.93
372367--372493	67	1.9	68	85	1	175	38	11	24	25	1.89
372555--372783	43	5.0	43	80	12	269	31	19	24	24	1.98
372497--373254	92	8.0	92	89	5	1149	31	18	25	24	1.97
372685--373254	49	11.9	53	76	15	427	31	18	25	24	1.97
372787--373256	43	10.1	44	77	14	453	31	18	25	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
373258--373488	33	7.1	33	89	5	344	19	17	33	29	1.95
373258--373488	98	2.4	99	92	1	376	19	17	33	29	1.95
373470--373590	36	3.4	37	78	10	128	32	10	33	23	1.89
373524--373653	31	4.1	31	81	10	129	30	14	36	18	1.91
385826--385900	20	3.7	20	85	3	105	37	13	14	34	1.85
385826--385908	41	2.0	41	95	0	148	37	13	15	33	1.86
392065--392195	52	2.5	52	88	0	199	32	15	16	35	1.90
392128--392166	20	2.0	19	95	5	69	30	10	12	46	1.75
392096--392215	52	2.3	52	85	2	152	34	13	17	35	1.89
392232--392300	32	2.1	33	97	2	131	34	18	11	34	1.87
392256--392280	13	1.9	13	100	0	50	32	16	16	36	1.90
392754--392794	16	2.5	16	84	4	55	85	7	2	4	0.81
392764--392794	8	3.9	8	95	0	53	90	3	0	6	0.55
392755--392807	9	5.8	9	82	14	56	86	3	5	3	0.77
393752--393883	71	1.9	71	84	6	178	28	20	12	38	1.89
397141--397203	28	2.2	28	88	5	92	26	23	22	26	2.00
397172--397380	81	2.6	81	79	8	228	28	22	12	36	1.91
398345--398399	26	2.1	26	93	0	92	32	23	21	21	1.98
398978--399028	24	2.1	24	82	13	61	7	17	0	74	1.05
399809--399846	19	2.0	20	89	5	60	78	0	15	5	0.91
399800--399846	24	2.0	23	84	12	60	78	0	14	6	0.93
400593--400693	29	3.5	28	71	10	78	24	8	16	49	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
400527--400704	59	3.0	59	81	5	207	25	8	15	50	1.72
401341--401380	21	1.9	21	89	0	62	35	20	20	25	1.96
401419--401469	20	2.5	20	83	3	66	41	11	15	31	1.83
404444--404670	80	2.9	79	79	1	238	26	26	14	31	1.95
404602--404721	51	2.4	51	82	2	143	27	27	14	30	1.95
404653--404881	79	2.9	79	81	6	284	27	26	13	32	1.94
404562--404798	130	1.8	130	84	3	325	27	25	13	33	1.93
404445--404907	210	2.2	209	80	3	525	27	25	12	33	1.93
405845--405890	20	2.2	20	84	3	56	41	13	15	30	1.85
405937--406013	32	2.4	33	86	4	113	25	16	14	42	1.86
413204--413253	27	1.9	26	84	8	66	30	28	10	32	1.89
416537--416565	12	2.4	12	100	0	58	10	34	13	41	1.79
418815--418858	20	2.2	20	88	4	63	43	0	0	56	0.99
418814--418862	19	2.6	18	79	17	55	44	0	0	55	0.99
418878--418925	20	2.4	20	90	10	80	39	0	0	60	0.97
420191--420295	32	3.4	31	75	6	106	38	7	5	48	1.56
421952--421990	19	2.0	19	95	5	69	43	0	0	56	0.99
421972--422033	26	2.4	26	82	17	76	54	0	0	45	0.99
421964--422031	29	2.3	29	80	5	75	52	0	0	47	1.00
421990--422056	26	2.6	26	84	11	84	56	0	0	43	0.99
430051--430125	20	3.8	20	76	0	87	34	13	10	41	1.79
431035--431089	22	2.5	22	96	0	101	18	12	9	60	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
444152--444220	10	6.6	10	78	18	61	85	7	4	2	0.81
444150--444220	22	3.3	21	84	4	88	85	7	4	2	0.80
444149--444210	1	62.0	1	77	0	61	88	6	3	1	0.66
444149--444212	19	3.4	19	82	4	78	87	6	3	3	0.73
445438--445664	29	8.0	29	82	11	274	27	29	17	25	1.98
445437--446063	28	23.6	28	71	18	370	26	31	18	23	1.97
446342--447996	28	58.6	28	79	6	1497	27	31	18	23	1.98
446342--447996	227	7.2	227	81	8	1438	27	31	18	23	1.98
448615--448688	20	3.7	20	74	3	60	32	13	12	41	1.81
448615--448692	40	2.0	39	84	2	102	32	12	12	42	1.81
449600--449655	23	2.5	23	94	2	96	17	12	8	60	1.57
450404--450522	51	2.4	51	97	1	222	32	18	15	33	1.92
450527--450552	13	2.0	13	100	0	52	30	15	15	38	1.88
450507--450570	32	2.0	33	87	3	94	28	14	17	40	1.88
452452--452740	150	1.9	150	92	1	483	39	15	10	34	1.82
454247--454941	167	4.2	163	78	6	583	50	7	10	31	1.66
454342--454941	333	1.8	332	80	5	735	50	7	10	31	1.64
456364--457095	44	16.8	44	72	11	418	42	15	21	20	1.89
456328--457095	88	8.8	86	77	11	544	42	15	21	20	1.89
456566--456840	133	2.1	133	85	3	376	44	16	20	19	1.87
456630--457093	86	5.3	86	80	7	374	42	15	21	20	1.89
457380--457419	3	13.7	3	94	5	73	30	0	0	70	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
470279--470581	149	2.0	149	89	2	466	41	14	9	34	1.79
472105--472522	159	2.6	159	79	6	423	50	8	11	29	1.68
475913--475987	20	3.8	20	85	0	96	34	14	10	40	1.81
477246--477324	4	20.8	4	74	17	53	81	16	2	0	0.81
477246--477324	7	10.4	8	76	14	53	81	16	2	0	0.81
477240--477362	54	2.2	55	82	15	148	80	16	2	0	0.87
477239--477353	60	1.9	60	85	3	160	80	15	2	0	0.86
477239--477362	51	2.5	49	84	9	144	80	16	2	0	0.86
477243--477362	57	2.1	58	86	7	165	80	15	2	0	0.86
478762--479037	28	9.6	28	83	5	318	31	32	16	19	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25