genome.fa.s329.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold329
Parameters: 2 7 7 80 10 50 1000
Length:  4121247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  7  of  25  ( 2930 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
928433--928998	60	9.0	60	78	11	453	21	31	11	35	1.90
928318--928958	187	3.4	184	79	11	563	21	31	11	34	1.90
928318--929041	221	3.3	208	77	13	622	22	31	11	34	1.90
928772--928971	67	3.0	66	86	5	258	20	32	11	36	1.88
928872--929058	60	3.1	58	76	17	168	21	31	12	34	1.91
929034--929154	29	4.2	29	78	13	115	32	32	16	19	1.94
929185--929956	87	8.9	88	81	8	856	26	26	19	27	1.99
929401--929857	39	11.0	39	77	12	392	26	27	20	25	1.99
929820--930056	49	4.8	49	85	3	321	24	25	17	32	1.97
929185--929858	253	2.7	247	86	5	723	26	26	19	27	1.99
929819--930152	49	6.7	49	79	4	303	24	25	16	33	1.96
929820--930061	101	2.4	100	87	2	326	23	25	17	33	1.96
929820--930108	101	2.9	101	84	2	307	23	25	17	33	1.96
930942--930996	20	2.8	20	88	5	76	32	12	12	41	1.81
934410--934642	88	2.6	88	83	6	301	28	27	14	28	1.95
935016--935143	40	3.2	40	70	8	116	19	25	14	40	1.89
935302--935501	85	2.4	85	83	1	240	19	23	12	45	1.84
935858--935896	20	1.9	21	94	5	71	41	20	17	20	1.91
936408--936451	23	1.9	23	81	9	54	29	6	22	40	1.80
936755--936974	65	3.4	65	85	3	282	17	21	16	44	1.87
938367--938406	20	2.0	20	85	9	55	22	17	10	50	1.76
941571--941964	165	2.4	166	80	7	410	31	12	8	47	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
941677--942205	165	3.2	164	79	4	548	31	11	8	48	1.68
941735--942262	168	3.2	164	73	8	462	30	10	9	49	1.69
944013--944293	146	1.9	146	82	1	348	24	16	19	39	1.92
944035--944332	146	2.0	146	79	2	321	24	16	20	38	1.93
946311--946388	32	2.4	33	81	14	92	17	14	21	46	1.84
951929--951974	20	2.3	20	88	7	67	41	8	15	34	1.78
952932--952973	18	2.1	21	83	12	54	28	2	7	61	1.35
954023--954071	24	2.0	24	96	0	89	55	10	12	22	1.66
957931--957971	16	2.4	18	84	15	61	19	2	4	73	1.13
958876--958922	16	2.9	16	72	12	51	19	6	19	55	1.64
960949--960999	19	2.6	20	87	3	68	33	15	19	31	1.93
961322--961366	23	2.0	21	83	8	54	44	20	2	33	1.63
963199--963237	13	3.0	13	92	0	69	41	12	15	30	1.85
963265--963303	20	1.9	21	89	5	62	33	17	12	35	1.88
969418--969460	13	3.3	13	96	0	77	37	9	16	37	1.81
978581--978722	52	2.7	50	76	13	133	59	0	0	39	1.08
978644--978686	17	2.4	18	85	14	63	60	0	2	37	1.10
978650--978714	17	4.4	15	74	21	66	56	0	1	41	1.08
978626--978712	26	3.4	25	77	16	88	56	0	1	42	1.07
983672--983730	26	2.3	27	82	8	77	47	1	1	49	1.21
990537--990581	20	2.3	20	88	3	65	71	0	0	28	0.87
992461--992524	27	2.3	27	91	2	101	57	10	10	20	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
993337--993401	33	2.0	33	84	6	87	32	16	13	36	1.89
993432--993487	20	2.8	20	86	2	78	42	12	16	28	1.84
998415--998511	40	2.4	40	86	3	124	32	14	12	40	1.83
998415--998509	20	4.8	20	80	5	102	33	13	12	40	1.83
1002061--1002260	79	2.5	79	80	13	241	35	12	23	29	1.90
1002367--1002441	28	2.7	28	83	6	91	25	18	34	21	1.96
1002476--1002547	28	2.6	28	88	4	101	26	19	30	23	1.98
1002534--1002698	51	3.2	51	77	1	161	34	13	23	28	1.93
1005008--1005081	20	3.7	19	83	7	94	43	13	14	28	1.84
1009209--1009406	104	1.9	104	90	4	319	28	17	19	34	1.94
1009209--1009386	52	3.4	52	96	1	322	26	18	19	35	1.95
1009461--1009526	19	3.8	18	74	24	70	40	18	10	30	1.84
1010221--1011080	49	17.8	49	80	6	846	32	16	24	25	1.96
1010266--1011080	92	8.5	94	82	8	746	32	16	24	26	1.96
1011087--1011240	33	4.7	33	87	4	222	17	18	33	31	1.94
1011087--1011240	65	2.4	65	87	3	220	17	18	33	31	1.94
1011087--1011265	98	1.8	98	90	2	288	18	17	34	29	1.95
1011087--1011265	33	5.5	33	83	5	193	18	17	34	29	1.95
1011241--1011482	34	7.1	34	91	3	371	35	14	32	17	1.90
1011458--1011540	29	2.9	28	83	3	105	28	14	32	24	1.94
1011506--1011814	31	10.1	31	81	9	359	32	15	29	22	1.95
1011550--1011814	118	2.2	123	87	6	373	30	15	29	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1013132--1013180	21	2.4	21	75	3	55	10	4	6	79	1.03
1019171--1019296	52	2.4	52	96	2	227	26	19	19	34	1.95
1019171--1019316	52	2.8	52	90	4	188	28	17	19	34	1.95
1019371--1019436	19	3.8	18	74	24	70	40	18	10	30	1.84
1031332--1031792	28	16.1	28	86	6	541	29	31	16	23	1.96
1031332--1031741	57	7.2	56	87	5	547	29	31	16	22	1.96
1031332--1031741	85	4.8	85	89	3	569	29	31	16	22	1.96
1032667--1032743	20	3.8	20	79	6	93	31	16	12	38	1.87
1036976--1037031	20	2.7	22	86	10	82	48	8	12	30	1.72
1040202--1040255	20	2.7	19	88	11	74	31	12	18	37	1.89
1050549--1050598	3	16.7	3	91	0	73	36	2	0	62	1.07
1054539--1054619	33	2.5	32	91	0	117	33	16	18	32	1.93
1054688--1054714	13	2.1	13	100	0	54	40	14	14	29	1.86
1057045--1057082	10	3.5	11	82	10	51	52	0	15	31	1.43
1057039--1057082	21	2.0	22	91	4	72	47	0	18	34	1.49
1061743--1061777	15	2.3	15	95	0	61	28	28	0	42	1.56
1066137--1066180	22	2.0	22	86	0	61	45	4	2	47	1.35
1066278--1066387	55	2.0	56	96	1	204	44	6	10	39	1.63
1066446--1066479	17	1.9	18	88	5	52	55	2	8	32	1.45
1069609--1069633	13	1.9	13	100	0	50	32	16	16	36	1.90
1069642--1069770	52	2.5	52	92	0	213	37	17	15	30	1.90
1074844--1074895	13	4.0	13	97	0	95	36	15	15	32	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1076862--1076892	15	2.1	15	93	0	53	12	22	16	48	1.80
1086693--1086728	16	2.2	16	90	0	54	86	2	8	2	0.77
1087714--1088041	31	10.7	31	73	8	206	25	29	16	28	1.97
1087713--1087983	62	4.4	61	82	6	287	25	29	16	28	1.97
1087713--1087982	125	2.2	125	81	6	300	25	30	17	27	1.97
1087836--1088041	92	2.2	92	88	5	301	25	30	16	28	1.97
1087993--1088093	50	2.0	51	86	1	141	27	31	16	23	1.96
1088068--1088321	27	7.7	35	80	10	208	20	34	13	31	1.91
1088068--1088324	70	3.9	65	76	18	239	19	34	13	31	1.91
1088315--1088426	33	3.4	33	86	6	156	26	34	17	20	1.95
1088426--1088745	49	6.8	48	85	8	408	25	25	18	30	1.98
1088655--1089106	52	8.6	55	76	12	291	25	25	15	34	1.95
1088823--1089055	49	4.8	49	83	7	291	25	26	17	31	1.97
1088704--1088919	122	1.8	119	80	6	258	25	25	14	34	1.94
1088947--1089014	21	3.2	21	69	19	59	27	25	16	30	1.96
1088878--1089015	43	3.1	43	87	5	186	25	25	18	30	1.98
1088878--1089051	91	1.9	93	87	4	262	25	24	18	31	1.97
1088513--1089190	314	2.2	314	94	0	1196	25	25	15	33	1.95
1090054--1090078	13	1.9	13	100	0	50	32	16	16	36	1.90
1090087--1090162	32	2.4	32	97	0	143	32	21	19	26	1.97
1099750--1099777	6	4.7	6	100	0	56	53	0	0	46	1.00
1103749--1106585	767	3.7	770	91	2	4489	38	11	9	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1105992--1106018	14	1.9	14	100	0	54	29	14	22	33	1.94
1116650--1116678	15	2.0	15	93	6	51	48	0	0	51	1.00
1116779--1116805	14	1.9	14	100	0	54	37	3	7	51	1.48
1117406--1117456	13	4.3	13	72	23	58	33	15	15	35	1.90
1117388--1117456	34	2.1	32	94	5	120	34	15	14	34	1.89
1126105--1126130	13	2.0	13	100	0	52	30	15	15	38	1.88
1126085--1126153	34	2.1	32	89	5	102	36	15	14	33	1.89
1128613--1128670	19	3.0	20	85	7	84	34	17	15	32	1.91
1131004--1131043	21	2.0	21	90	5	64	47	0	20	32	1.50
1137359--1137423	33	2.0	33	87	6	96	36	16	10	35	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25