genome.fa.s329.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold329
Parameters: 2 7 7 80 10 50 1000
Length:  4121247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  5  of  25  ( 2930 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
622384--623639	95	13.6	87	85	9	1451	31	18	24	25	1.98
622627--622694	21	3.2	20	66	25	50	29	16	26	27	1.97
622276--623632	181	7.3	184	88	6	1673	31	18	24	25	1.97
622934--622998	21	3.0	23	65	19	57	35	16	20	27	1.94
623470--623537	22	3.1	22	62	26	54	30	20	25	23	1.98
623648--623954	37	8.4	37	93	4	500	35	10	33	19	1.87
623648--623953	113	2.8	112	91	6	500	35	10	33	19	1.87
623928--623981	27	2.0	27	88	0	81	18	16	40	24	1.90
624948--624986	19	2.1	19	85	0	51	0	7	10	82	0.86
632063--632187	52	2.4	52	95	0	223	28	17	18	36	1.94
632063--632207	52	2.8	51	89	4	211	29	17	18	34	1.94
632196--632220	13	1.9	13	100	0	50	36	16	16	32	1.90
632261--632330	33	2.1	33	89	0	104	40	14	11	34	1.82
632286--632310	13	1.9	13	100	0	50	32	16	16	36	1.90
637543--637730	79	2.4	78	83	2	225	31	18	27	23	1.97
637530--637730	78	2.6	78	82	2	233	29	16	28	24	1.97
637687--637756	28	2.5	27	84	9	88	24	18	34	22	1.96
637744--637966	52	4.3	51	80	6	232	31	11	26	30	1.92
637898--638077	79	2.3	80	91	0	281	30	15	27	26	1.96
638030--638107	27	2.9	27	82	5	95	25	17	32	24	1.97
638107--638204	51	1.9	51	84	12	130	36	10	21	31	1.87
640571--640596	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
640550--640616	33	2.0	33	88	0	98	43	16	14	25	1.86
640636--640703	19	3.9	18	76	23	83	38	14	11	35	1.83
640658--640682	13	1.9	13	100	0	50	32	16	16	36	1.90
640639--640701	32	2.0	32	96	0	117	36	15	12	34	1.86
640758--640815	21	2.8	21	94	0	107	37	20	12	29	1.89
640963--641127	81	2.0	81	98	0	321	32	22	19	26	1.97
647330--647363	9	3.9	9	88	3	52	70	14	0	14	1.17
647331--647373	18	2.4	18	88	7	61	72	9	0	18	1.11
647331--647391	17	3.7	17	76	12	65	68	9	0	21	1.18
647415--647455	20	2.2	18	91	8	64	82	0	2	14	0.76
649850--649880	16	1.9	16	93	0	53	51	0	6	41	1.27
650666--650731	34	2.0	33	85	8	89	51	0	0	48	1.00
650680--650745	34	2.0	34	82	8	82	56	0	0	43	0.99
650956--650989	9	3.7	9	88	4	50	61	0	2	35	1.11
650918--651798	183	4.7	188	82	9	959	42	9	5	41	1.61
651338--651371	9	3.7	9	88	4	50	61	0	2	35	1.11
650915--651797	382	2.3	380	86	4	1204	42	9	5	42	1.60
661161--661443	79	3.6	78	80	6	293	27	24	13	34	1.92
661377--661544	51	3.3	51	79	6	205	29	23	10	35	1.89
661497--661748	79	3.2	78	79	6	274	28	22	11	37	1.90
664453--664478	13	2.0	13	100	0	52	30	15	15	38	1.88
664517--664569	20	2.6	21	87	3	72	30	16	13	39	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
665101--665180	38	2.0	40	83	9	103	35	25	6	33	1.81
665185--665228	21	2.1	21	83	8	54	25	31	4	38	1.76
667035--667073	13	3.0	13	100	0	78	38	15	15	30	1.88
670986--671030	21	2.1	21	84	8	56	22	20	4	53	1.63
673248--673273	13	2.0	13	100	0	52	30	15	15	38	1.88
681839--681868	13	2.3	13	94	0	51	40	16	10	33	1.82
681912--681976	33	2.0	33	85	11	89	33	10	18	36	1.86
682624--682677	26	2.1	26	86	3	74	22	20	5	51	1.67
690673--690703	13	2.4	13	100	0	62	38	6	16	38	1.74
690752--690819	20	3.5	20	80	8	77	35	16	17	30	1.92
694068--694098	16	1.9	16	100	0	62	90	9	0	0	0.46
694076--694128	8	6.5	8	79	12	54	84	3	11	0	0.73
694067--694128	18	3.5	17	83	14	72	85	4	9	0	0.73
694067--694131	9	7.0	9	81	15	62	84	4	10	0	0.75
695023--695528	61	8.2	60	83	7	570	27	27	17	26	1.98
695046--695528	120	3.9	120	84	8	558	26	27	18	27	1.98
695017--695528	181	2.8	184	85	6	662	27	27	17	27	1.98
695046--695528	127	3.9	127	84	7	584	26	27	18	27	1.98
695517--695814	41	7.4	41	75	10	235	20	23	14	41	1.89
695511--695757	41	5.9	42	79	6	252	19	22	13	44	1.86
695511--695757	124	2.0	125	82	6	304	19	22	13	44	1.86
695709--695849	75	1.9	74	85	4	194	19	26	16	38	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
695714--695883	34	4.8	35	80	7	182	20	26	15	37	1.93
696498--696571	30	2.5	30	90	0	112	28	17	14	39	1.89
699002--699209	107	1.9	107	87	0	299	26	25	15	32	1.96
699081--699138	28	2.1	28	83	6	73	18	25	20	34	1.96
699090--699263	79	2.2	79	88	0	249	28	28	13	29	1.94
699195--699357	51	3.2	50	80	6	177	31	26	11	31	1.91
699297--699454	79	2.0	80	82	8	198	29	26	12	31	1.93
699427--699497	28	2.5	28	90	0	115	23	26	21	28	1.99
699349--699572	107	2.1	107	83	3	272	25	23	16	33	1.95
702709--702739	10	3.1	10	90	0	53	41	6	29	22	1.78
702764--702900	53	2.6	53	95	1	247	27	16	18	37	1.92
702870--702940	20	3.5	20	77	11	74	29	14	16	39	1.88
702980--703020	21	2.0	21	85	9	57	39	9	12	39	1.76
703562--703586	13	1.9	13	100	0	50	36	16	16	32	1.90
703539--703606	33	2.1	33	88	2	102	32	14	17	35	1.91
703629--703681	20	2.7	20	90	0	79	30	15	13	41	1.85
704247--704290	21	2.0	21	82	4	52	29	31	2	36	1.70
704316--704353	19	2.0	19	94	0	67	21	34	2	42	1.67
712331--712355	13	1.9	13	100	0	50	36	16	16	32	1.90
712308--712375	33	2.1	33	88	2	102	32	14	17	35	1.91
716426--716470	21	2.1	21	84	8	56	53	4	20	22	1.63
718275--718305	15	2.1	15	93	0	53	48	16	22	12	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
720384--720409	13	2.0	13	100	0	52	30	15	15	38	1.88
722958--722983	13	2.0	13	100	0	52	38	15	15	30	1.88
724576--724643	20	3.8	19	74	25	76	36	11	16	35	1.85
724576--724641	33	2.0	33	96	0	123	37	12	16	33	1.86
724596--724621	13	2.0	13	100	0	52	38	15	15	30	1.88
733532--733589	28	2.1	28	83	6	73	44	0	0	55	0.99
734527--734559	16	2.0	17	94	5	59	45	0	0	54	0.99
734634--734714	22	3.8	21	66	22	51	50	0	1	48	1.08
734669--734725	22	2.5	22	76	21	64	45	0	0	54	0.99
742856--742898	2	22.0	2	95	4	79	51	0	0	48	1.00
743767--743795	2	14.5	2	100	0	58	48	0	0	51	1.00
744904--744944	21	1.9	21	85	5	55	17	24	0	58	1.38
746840--747089	124	2.0	124	100	0	500	39	18	15	26	1.90
760085--760118	8	4.2	8	88	0	50	0	0	11	88	0.52
765097--765121	3	8.3	3	100	0	50	68	0	0	32	0.90
773061--773101	20	2.0	20	100	0	82	56	14	4	24	1.58
776084--776113	7	4.3	7	100	0	60	56	26	0	16	1.40
782848--782884	2	18.5	2	100	0	74	51	0	0	48	1.00
783754--783795	2	21.0	2	100	0	84	50	0	50	0	1.00
791276--791328	20	2.6	21	78	3	63	28	15	15	41	1.87
791317--791367	20	2.5	20	87	0	66	33	15	15	35	1.90
793994--794019	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
796395--796441	21	2.3	21	76	23	55	42	4	19	34	1.70
796562--796600	13	3.0	13	92	0	60	38	15	15	30	1.88
796586--796664	20	3.7	20	78	15	77	44	15	15	25	1.85
798679--798709	15	2.1	15	93	0	53	12	22	16	48	1.80
800513--800557	21	2.1	21	84	8	56	22	20	4	53	1.63
802775--802800	13	2.0	13	100	0	52	30	15	15	38	1.88
812473--812602	52	2.5	52	94	0	224	28	17	16	36	1.92
812558--812633	32	2.4	32	93	0	125	26	19	19	34	1.96
812642--812666	13	1.9	13	100	0	50	36	16	16	32	1.90
812704--812772	32	2.1	33	94	2	122	36	17	11	34	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25