genome.fa.s329.2.7.7.80.10.50.1000.25.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold329
Parameters: 2 7 7 80 10 50 1000
Length:  4121247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  25  of  25  ( 2930 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4028142--4028180	3	13.0	3	100	0	78	33	0	0	66	0.92
4029635--4029692	30	1.9	30	82	10	73	74	1	13	10	1.15
4033306--4033338	16	2.0	17	88	5	50	63	0	0	36	0.95
4035835--4035872	2	19.0	2	100	0	76	50	0	0	50	1.00
4036518--4036557	2	20.0	2	100	0	80	50	0	0	50	1.00
4045786--4045840	28	2.0	28	82	3	67	63	5	3	27	1.33
4046142--4046204	28	2.3	27	79	12	67	15	3	11	69	1.29
4046144--4046211	27	2.5	25	75	15	64	14	2	13	69	1.31
4046297--4046353	25	2.3	25	96	0	105	29	8	10	50	1.67
4048749--4048781	2	16.5	2	100	0	66	0	48	0	51	1.00
4055427--4055646	110	2.0	110	98	0	422	26	21	16	35	1.94
4057651--4058443	27	28.9	27	80	4	773	23	29	14	32	1.95
4057651--4058443	55	14.4	54	81	4	739	23	29	14	32	1.95
4057651--4058443	82	9.6	82	83	4	810	23	29	14	32	1.95
4058424--4058462	19	2.1	19	95	0	69	28	28	20	23	1.99
4058474--4059378	28	31.2	28	78	7	550	30	28	16	24	1.96
4058549--4059381	148	5.7	147	79	8	746	30	28	15	24	1.96
4058457--4059259	178	4.6	177	81	7	776	30	28	16	24	1.97
4059501--4059621	49	2.6	46	80	7	136	23	25	18	33	1.97
4063021--4063065	14	3.4	14	81	12	58	28	0	4	66	1.11
4064551--4064594	21	2.1	21	83	8	54	27	31	2	38	1.69
4066232--4066278	21	2.3	21	76	23	55	42	4	19	34	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4066399--4066437	13	3.0	13	100	0	78	38	15	15	30	1.88
4068516--4068546	15	2.1	15	93	0	53	12	22	16	48	1.80
4070330--4070374	21	2.1	21	84	8	56	22	20	4	53	1.63
4078386--4078411	13	2.0	13	100	0	52	30	15	15	38	1.88
4082958--4082988	15	2.1	15	93	0	53	12	22	16	48	1.80
4084785--4084829	21	2.1	21	84	8	56	22	20	4	53	1.63
4087046--4087071	13	2.0	13	100	0	52	30	15	15	38	1.88
4087110--4087162	20	2.6	21	87	3	72	30	16	13	39	1.87
4090729--4090834	48	2.2	47	77	11	117	39	14	9	36	1.78
4093136--4093200	33	2.0	33	90	6	105	29	13	16	40	1.88
4093156--4093181	13	2.0	13	100	0	52	30	15	15	38	1.88
4093828--4093918	39	2.3	39	79	11	105	32	21	6	38	1.80
4095269--4095311	20	2.1	20	82	4	50	11	30	41	16	1.83
4095752--4095777	13	2.0	13	100	0	52	38	15	15	30	1.88
4101927--4101979	20	2.6	21	85	8	74	28	13	16	41	1.86
4101927--4101985	20	3.0	19	85	7	73	25	11	20	42	1.86
4102030--4102085	20	2.8	20	83	5	69	30	17	12	39	1.87
4108814--4108887	20	3.7	20	92	1	121	33	18	9	37	1.84
4109617--4109685	20	3.5	20	75	9	70	30	10	15	43	1.80
4114024--4114087	29	2.3	28	82	12	78	46	6	7	39	1.58
4114097--4114130	14	2.3	15	90	5	52	67	2	8	20	1.31
4114096--4114157	27	2.3	27	85	2	79	59	4	9	25	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4114084--4114143	14	4.2	14	70	10	50	63	5	8	23	1.42
4115472--4115547	40	1.9	40	88	0	116	30	15	15	38	1.89
4115570--4115619	19	2.6	19	87	3	64	40	14	16	30	1.87
4117602--4117671	35	2.0	35	100	0	140	34	14	8	42	1.76
4118018--4118093	39	1.9	39	92	5	127	31	11	14	42	1.82
4121086--4121146	31	2.0	29	84	12	79	63	4	4	26	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25

The End!