genome.fa.s329.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold329
Parameters: 2 7 7 80 10 50 1000
Length:  4121247

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   

This is table  21  of  25  ( 2930 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3309894--3309926	16	2.0	17	88	5	50	48	0	0	51	1.00
3310524--3310577	28	1.9	28	84	0	72	22	11	14	51	1.73
3311458--3311511	11	4.9	11	82	6	65	66	0	1	31	1.02
3311558--3311620	15	3.8	15	74	22	54	61	4	0	33	1.17
3314532--3314613	43	2.0	41	83	9	103	41	0	1	57	1.06
3314657--3314745	45	2.0	46	86	6	128	51	0	2	46	1.13
3316153--3316196	17	2.5	18	82	14	56	59	2	0	38	1.10
3316153--3316216	18	3.4	19	79	18	62	57	1	0	40	1.08
3315824--3316962	589	2.0	572	88	5	1698	43	9	7	39	1.65
3316755--3316826	28	2.6	27	73	6	72	51	2	2	43	1.30
3319724--3319791	33	2.1	33	91	5	111	38	4	11	45	1.61
3320122--3320166	23	2.0	23	82	8	56	31	13	8	46	1.74
3321025--3321054	16	1.9	15	93	6	51	56	3	0	40	1.16
3325858--3325911	28	1.9	28	88	0	81	27	12	33	25	1.93
3325868--3326283	80	5.2	79	71	12	282	37	11	23	28	1.89
3326184--3326238	28	2.0	26	86	6	74	30	14	29	25	1.95
3325871--3326281	160	2.6	158	76	9	401	37	11	23	28	1.89
3329742--3329829	24	3.6	24	68	17	65	50	2	3	44	1.31
3331105--3331138	18	1.9	18	88	5	52	44	0	8	47	1.34
3331244--3331290	24	1.9	24	86	4	67	51	0	2	46	1.13
3331461--3331501	21	2.0	21	85	9	57	39	0	0	60	0.96
3333572--3333609	17	2.2	17	90	0	58	36	21	7	34	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3339810--3339856	24	2.0	24	86	0	67	6	17	0	76	0.98
3340954--3341059	45	2.2	48	83	6	137	29	20	30	19	1.97
3341092--3341610	32	16.2	32	96	0	894	16	18	34	31	1.93
3341625--3342265	27	23.4	27	92	2	994	29	14	34	22	1.94
3341625--3342265	110	5.8	110	90	2	1024	29	14	34	22	1.94
3341625--3342264	137	4.7	136	91	2	1014	29	14	34	22	1.93
3349478--3349527	24	2.2	24	82	7	59	48	8	4	40	1.51
3350073--3350118	24	2.0	24	86	4	67	6	17	0	76	1.00
3350476--3350520	23	1.9	23	86	4	63	22	17	6	53	1.67
3351314--3351367	27	2.0	27	100	0	108	33	7	7	51	1.58
3352824--3352885	2	34.5	2	73	20	57	56	0	43	0	0.99
3352824--3352885	5	11.5	6	77	17	57	56	0	43	0	0.99
3352831--3352878	24	1.9	26	87	8	73	56	0	43	0	0.99
3356102--3356180	32	2.4	33	85	2	97	56	0	2	40	1.12
3356135--3356184	18	3.0	18	73	26	56	60	0	2	38	1.09
3356722--3356759	16	2.3	17	86	4	51	68	2	0	28	1.03
3357453--3357503	19	2.7	19	76	11	52	76	1	7	13	1.09
3361378--3361431	20	2.7	20	85	0	72	53	0	38	7	1.29
3361369--3361410	5	8.4	5	89	0	66	64	0	33	2	1.07
3361734--3361774	20	2.0	20	86	9	57	46	19	7	26	1.76
3384292--3384553	131	2.0	129	93	1	443	24	13	21	40	1.90
3385440--3385479	18	2.2	18	100	0	80	30	25	15	30	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3390673--3390720	23	2.1	23	100	0	96	27	16	25	31	1.97
3397551--3397736	59	3.2	58	74	2	165	52	8	8	31	1.61
3398901--3399055	78	2.0	78	83	5	197	37	7	19	35	1.81
3399020--3399172	75	2.1	73	87	2	216	37	9	15	37	1.80
3399779--3399806	2	14.0	2	100	0	56	50	0	50	0	1.00
3399814--3399850	19	1.9	19	88	0	56	59	2	32	5	1.34
3399894--3399966	36	1.9	36	83	10	92	41	1	0	57	1.07
3402388--3402417	2	15.0	2	92	0	51	50	0	3	46	1.18
3402417--3402480	2	32.5	2	90	3	103	53	0	46	0	1.00
3405822--3405854	17	2.0	17	88	5	50	42	0	3	54	1.15
3406607--3406638	5	6.4	5	100	0	64	18	0	0	81	0.70
3408054--3408082	3	9.7	3	100	0	58	68	0	0	31	0.89
3410069--3410112	16	3.0	15	84	12	56	45	0	2	52	1.13
3410200--3410237	18	2.1	18	90	0	58	15	0	10	73	1.09
3409940--3410400	213	2.2	212	82	7	538	29	7	9	52	1.61
3412951--3412985	14	2.6	14	95	4	63	37	17	14	31	1.89
3413294--3413338	19	2.4	19	96	0	81	48	0	2	48	1.13
3414125--3414149	2	12.5	2	100	0	50	48	0	0	52	1.00
3414771--3414838	15	4.6	16	68	27	53	58	2	0	38	1.13
3414775--3414837	21	3.0	22	75	15	78	61	3	0	34	1.12
3415396--3415436	21	2.0	20	86	9	57	36	14	7	41	1.74
3416167--3416213	10	4.4	10	84	10	58	82	2	14	0	0.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3416167--3416212	20	2.3	20	88	7	67	82	2	15	0	0.76
3416909--3416984	27	2.8	28	82	13	88	21	13	13	52	1.73
3416963--3417111	57	2.6	58	84	4	178	29	10	10	49	1.70
3416971--3417060	29	3.1	29	69	20	80	32	8	10	48	1.67
3417418--3417490	20	3.6	20	81	3	101	36	13	17	31	1.89
3417435--3417511	21	3.7	21	79	6	95	44	11	15	28	1.82
3417418--3417511	41	2.3	41	96	3	172	40	12	17	29	1.86
3417550--3417575	13	2.0	13	100	0	52	38	15	15	30	1.88
3421638--3421668	15	2.1	15	93	0	53	48	16	22	12	1.80
3423739--3423777	13	3.0	13	96	0	69	30	17	15	35	1.91
3426221--3426334	20	5.6	20	79	4	138	38	13	17	30	1.88
3426238--3426355	21	5.7	21	78	6	134	43	11	16	28	1.83
3426221--3426355	41	3.3	41	97	2	254	40	12	17	29	1.86
3426394--3426419	13	2.0	13	100	0	52	38	15	15	30	1.88
3433806--3433843	6	6.3	6	100	0	76	63	0	0	36	0.95
3434747--3434787	20	2.0	21	85	9	57	41	21	17	19	1.90
3441109--3441155	13	3.6	13	91	0	76	31	17	12	38	1.87
3441303--3441331	13	2.1	14	93	6	51	48	24	0	27	1.51
3443783--3443807	13	1.9	13	100	0	50	32	20	16	32	1.94
3444610--3444671	10	5.0	14	64	28	50	22	22	11	43	1.85
3444610--3444671	24	2.6	24	92	0	106	22	22	11	43	1.85
3445034--3445088	24	2.3	24	100	0	110	14	10	25	49	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3445129--3445215	36	2.6	34	83	10	99	29	16	26	27	1.96
3449892--3449953	25	2.5	25	100	0	124	56	3	0	40	1.15
3449873--3449987	14	8.5	14	66	21	57	50	3	0	45	1.24
3450392--3450464	35	2.1	35	94	0	128	49	1	4	45	1.29
3450414--3450522	45	2.3	44	78	9	110	47	0	1	50	1.11
3450414--3450508	45	2.1	48	82	7	117	48	0	2	49	1.13
3451311--3451401	42	2.2	41	81	11	107	36	5	7	50	1.54
3456687--3456785	51	1.9	51	91	4	164	32	8	28	31	1.86
3456771--3456847	28	2.8	28	88	4	111	25	22	31	20	1.98
3456827--3456940	49	2.3	49	81	3	129	33	9	28	28	1.89
3456880--3457181	79	3.8	79	86	2	401	32	13	26	28	1.94
3456880--3457181	158	1.9	158	87	2	446	32	13	26	28	1.94
3457117--3457296	51	3.5	51	81	2	202	33	13	26	26	1.94
3459576--3459614	20	2.0	20	89	0	60	41	7	15	35	1.76
3459596--3459625	13	2.3	13	94	0	51	40	10	16	33	1.82
3459576--3459645	33	2.1	33	86	5	97	38	11	17	32	1.85
3459701--3459726	13	2.0	13	100	0	52	38	15	15	30	1.88
3463338--3463410	27	2.7	27	97	0	137	16	21	38	23	1.93
3465796--3465821	13	2.0	13	100	0	52	30	15	15	38	1.88
3467711--3467748	9	4.2	9	83	9	51	28	2	0	68	1.03
3467714--3467763	25	2.0	26	84	4	66	28	4	2	66	1.21
3468470--3468579	55	2.0	55	100	0	220	36	9	14	40	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3473118--3473194	20	3.8	20	84	6	102	41	11	15	31	1.83
3473894--3474017	49	2.7	46	82	7	151	33	20	26	20	1.97
3474079--3474931	28	29.1	29	82	8	842	23	18	29	29	1.97
3474086--3474931	57	14.4	57	84	7	819	22	18	29	29	1.97
3477426--3477450	13	1.9	13	100	0	50	32	16	16	36	1.90
3477459--3477579	52	2.3	52	92	0	206	35	19	17	28	1.94
3485761--3485814	27	2.0	27	85	0	72	22	40	16	20	1.91
3485792--3486349	34	17.8	33	72	13	210	21	35	14	28	1.93
3485861--3486275	58	6.9	56	69	20	207	23	35	14	26	1.93
3485735--3486518	154	5.1	154	93	1	1255	21	35	14	28	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25