genome.fa.s18.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold18
Parameters: 2 7 7 80 10 50 1000
Length:  4432388

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  13  of  27  ( 3197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1735641--1735891	67	3.8	66	84	7	325	34	15	26	23	1.94
1735643--1735891	98	2.6	98	96	0	455	34	15	26	23	1.94
1737077--1737123	15	2.9	15	84	12	58	2	0	14	82	0.75
1744087--1744114	13	2.2	13	100	0	56	39	17	14	28	1.89
1744069--1744134	33	2.0	33	88	5	98	40	13	15	30	1.85
1744153--1744229	32	2.4	32	93	2	129	33	15	14	36	1.88
1747554--1747607	20	2.7	20	91	5	83	37	18	12	31	1.89
1747593--1747693	43	2.3	43	94	0	184	31	17	22	27	1.97
1747679--1747751	20	3.7	19	85	7	85	38	16	15	30	1.89
1748916--1748940	13	1.9	13	100	0	50	32	16	16	36	1.90
1762538--1762578	17	2.4	17	84	12	57	82	17	0	0	0.66
1762539--1762578	16	2.4	16	88	12	55	85	15	0	0	0.61
1763971--1764110	28	5.0	28	90	1	217	33	31	17	17	1.93
1764090--1764282	34	5.8	34	79	6	155	19	34	12	33	1.90
1764091--1764282	66	2.9	66	80	6	199	19	34	13	33	1.90
1764102--1764282	100	1.8	99	83	5	240	17	34	12	35	1.88
1764279--1764714	49	8.8	49	81	5	441	23	26	17	31	1.97
1764279--1764714	101	4.4	98	82	5	441	23	26	17	31	1.97
1764279--1764619	150	2.3	148	85	4	452	24	26	17	31	1.97
1765766--1765791	13	2.0	13	100	0	52	38	15	15	30	1.88
1765748--1765811	32	2.0	33	87	3	94	37	20	14	28	1.91
1771370--1771439	20	3.5	20	78	7	79	41	12	15	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1772383--1772938	28	19.3	28	75	9	361	20	17	32	29	1.96
1772383--1772939	85	6.5	84	75	9	415	20	17	32	29	1.96
1772952--1773025	13	5.6	14	71	12	66	37	17	12	32	1.87
1772952--1773025	26	2.8	26	75	13	80	37	17	12	32	1.87
1774222--1774246	11	2.3	11	100	0	50	0	0	8	92	0.40
1780932--1781462	266	2.0	266	97	0	1008	22	22	23	31	1.98
1794036--1794101	20	3.3	20	83	8	98	40	12	16	30	1.85
1794710--1794750	3	13.7	3	84	0	55	26	31	0	41	1.56
1794710--1794752	9	4.8	9	86	11	61	25	30	0	44	1.55
1796434--1796489	19	2.9	19	86	2	76	35	14	17	32	1.90
1796474--1796500	13	2.1	13	100	0	54	40	14	14	29	1.86
1797939--1797991	20	2.6	20	84	3	70	43	15	7	33	1.74
1802421--1802457	13	2.8	13	87	0	56	37	13	13	35	1.84
1806513--1806548	15	2.4	15	90	0	54	30	8	2	58	1.42
1808674--1808736	32	1.9	32	83	3	81	38	12	15	33	1.86
1808796--1808848	20	2.7	20	93	0	88	39	15	11	33	1.83
1808196--1811584	865	4.0	837	89	4	4770	33	14	15	37	1.88
1812382--1812798	163	2.6	161	82	6	475	48	9	11	29	1.72
1812452--1812931	163	2.9	161	80	9	456	47	10	12	29	1.75
1813198--1813698	256	2.0	245	89	7	764	38	13	13	35	1.83
1818446--1818513	12	5.7	12	74	10	59	70	1	25	2	1.09
1818443--1818494	13	3.9	13	76	2	50	75	0	23	1	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1823294--1823422	52	2.5	52	97	0	249	27	18	18	34	1.95
1823500--1823583	13	5.5	13	68	28	51	35	19	11	33	1.88
1823508--1823570	19	3.6	19	76	24	84	36	19	11	33	1.87
1823500--1823584	32	2.7	32	96	0	161	36	18	11	32	1.88
1823815--1824103	97	3.0	96	86	3	400	30	25	9	33	1.88
1835789--1835865	20	3.8	20	71	0	73	29	11	11	46	1.76
1843689--1843817	52	2.5	52	98	0	249	27	18	18	34	1.95
1843805--1843858	21	2.7	20	82	8	65	38	12	18	29	1.88
1843881--1843978	19	5.8	18	69	28	81	36	17	13	32	1.88
1843876--1843976	32	3.1	32	94	1	175	35	17	12	33	1.88
1843900--1843956	13	3.9	13	72	24	51	33	17	15	33	1.92
1844674--1845234	49	11.4	49	74	12	488	33	17	25	24	1.96
1844812--1845234	190	2.2	192	89	3	646	31	18	25	24	1.97
1844812--1845233	92	4.5	92	88	4	601	31	18	25	24	1.97
1845240--1845490	32	7.8	32	88	6	357	17	19	35	28	1.94
1845240--1845489	65	3.9	63	90	3	392	16	19	35	28	1.94
1845529--1845972	27	15.2	27	75	14	366	29	13	35	20	1.92
1845495--1845940	61	7.5	61	87	7	521	30	13	35	20	1.91
1845652--1846005	88	4.0	88	90	3	545	29	14	34	21	1.92
1846006--1846165	32	5.1	31	84	6	207	31	16	30	21	1.95
1847432--1847510	25	3.0	25	78	9	70	3	8	13	73	1.21
1847439--1847486	16	3.0	16	82	14	55	0	4	14	81	0.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1852191--1852216	13	2.0	13	100	0	52	38	15	15	30	1.88
1852173--1852236	33	2.0	33	87	9	96	40	17	14	28	1.88
1854428--1854479	21	2.4	21	78	9	61	63	3	9	23	1.41
1860220--1860259	20	2.0	21	85	9	57	45	2	20	32	1.64
1860925--1860983	19	3.4	19	69	26	67	38	16	16	27	1.91
1860939--1860996	13	4.0	13	72	23	53	37	15	17	29	1.90
1860921--1861016	32	3.0	32	92	4	149	38	16	16	28	1.91
1860932--1860989	17	3.5	17	68	25	52	39	13	17	29	1.88
1864359--1864487	52	2.5	52	90	0	213	29	20	17	33	1.95
1864496--1864520	13	1.9	13	100	0	50	36	16	16	32	1.90
1864559--1864626	32	2.1	32	97	0	127	36	17	11	33	1.86
1864583--1864607	13	1.9	13	100	0	50	32	16	16	36	1.90
1864564--1864647	19	4.7	19	78	18	99	36	16	13	33	1.87
1874052--1874135	1	84.0	1	73	0	51	84	8	3	3	0.85
1874052--1874137	11	8.0	11	72	13	72	83	9	3	3	0.87
1875354--1876001	28	22.5	28	81	8	689	28	31	17	22	1.97
1875928--1876022	32	3.1	32	79	5	99	26	25	18	29	1.98
1876914--1876990	20	3.8	20	84	0	100	32	12	11	42	1.80
1880702--1880742	13	3.2	12	83	12	55	85	12	2	0	0.70
1881316--1881374	32	1.9	31	90	10	95	32	23	15	28	1.95
1881970--1882034	33	2.0	32	85	8	87	38	13	13	33	1.85
1883182--1883243	26	2.4	26	76	12	65	37	12	16	33	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1883267--1883757	28	17.4	28	83	5	555	32	28	16	22	1.96
1883268--1883757	85	5.8	85	83	4	582	32	28	16	22	1.96
1885250--1885326	24	3.3	24	68	10	61	70	1	22	6	1.18
1886981--1887286	97	3.2	97	90	0	470	28	28	13	29	1.94
1890832--1890993	31	4.9	33	82	10	181	27	25	12	33	1.93
1890832--1890993	65	2.5	65	82	10	188	27	25	12	33	1.93
1899620--1900066	222	2.0	222	100	0	894	28	21	8	40	1.84
1902497--1902521	13	1.9	13	100	0	50	32	16	16	36	1.90
1911515--1911544	16	1.9	16	93	6	53	16	10	0	73	1.09
1913425--1913478	17	3.1	16	78	21	56	24	3	0	72	1.01
1919645--1919760	57	2.0	58	94	3	207	47	3	32	16	1.63
1922259--1922511	128	2.0	128	92	0	416	40	13	21	24	1.90
1926404--1926479	38	2.0	38	94	0	134	40	13	15	30	1.86
1927629--1927677	24	2.0	25	88	4	73	38	0	22	38	1.54
1936311--1936427	58	2.0	59	91	1	191	52	11	11	23	1.70
1941551--1941594	14	3.1	14	81	15	54	52	15	9	22	1.71
1946632--1946659	2	14.0	2	100	0	56	50	0	0	50	1.00
1946834--1946876	20	2.2	20	95	0	77	23	20	23	32	1.98
1950165--1950220	10	5.5	10	76	16	53	1	17	1	78	0.92
1950169--1950214	21	2.2	21	84	7	58	2	15	2	80	0.91
1950164--1950257	16	5.6	17	76	17	81	2	22	1	74	0.99
1950170--1950263	22	4.3	21	78	15	68	2	22	1	74	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1950192--1950261	8	8.4	8	77	13	70	1	24	0	74	0.90
1950193--1950276	17	5.2	16	80	11	91	2	26	0	71	0.98
1950194--1950264	6	12.0	6	74	15	51	1	26	0	71	0.94
1950211--1950276	22	3.1	22	71	16	59	3	27	0	69	1.03
1951758--1951822	33	2.0	32	85	11	87	33	18	12	35	1.88
1951873--1951937	32	2.0	33	87	3	96	43	13	13	29	1.83
1951892--1951918	13	2.1	13	100	0	54	40	14	14	29	1.86
1961222--1961288	33	2.0	33	91	5	109	23	31	17	26	1.97
1962190--1962250	20	3.1	19	83	6	86	32	13	16	37	1.87
1965372--1965412	13	3.2	13	92	0	73	36	17	14	31	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27