genome.fa.s18.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold18
Parameters: 2 7 7 80 10 50 1000
Length:  4432388

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  26  of  27  ( 3197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4209181--4209238	19	3.0	19	82	2	71	43	13	15	27	1.85
4217491--4217536	23	1.9	25	82	8	60	39	28	4	28	1.76
4218084--4218109	13	2.0	13	100	0	52	38	15	15	30	1.88
4230019--4230065	2	23.5	2	91	0	76	48	2	2	46	1.25
4231555--4231595	7	5.9	7	100	0	82	73	0	0	26	0.84
4231897--4231959	33	2.0	32	84	12	85	55	3	0	41	1.16
4235828--4235869	22	2.0	21	85	4	57	42	7	26	23	1.80
4236277--4236342	16	4.1	16	96	0	114	43	18	0	37	1.50
4237054--4237099	24	1.9	24	86	0	65	41	28	6	23	1.79
4237094--4237157	28	2.3	28	89	5	94	53	18	7	20	1.69
4237104--4237158	28	2.0	28	96	0	101	49	20	10	20	1.78
4241683--4241737	28	2.0	28	92	0	92	52	18	7	21	1.69
4243136--4243168	15	2.2	15	94	0	57	60	0	3	36	1.12
4243953--4244025	2	37.0	2	78	13	71	47	5	0	46	1.25
4248294--4248328	4	8.8	4	87	0	52	71	0	2	25	1.00
4253562--4253614	20	2.7	20	82	11	81	35	11	18	33	1.87
4259358--4259388	15	2.1	15	93	0	53	48	16	22	12	1.80
4261014--4261038	13	1.9	13	100	0	50	36	16	16	32	1.90
4260994--4261063	33	2.1	33	89	0	104	35	11	12	40	1.80
4261103--4261127	13	1.9	13	100	0	50	32	16	16	36	1.90
4261136--4261260	52	2.4	52	94	0	214	36	18	16	28	1.93
4266952--4267041	39	2.3	40	82	3	110	37	6	23	32	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4267685--4267710	13	2.0	13	100	0	52	38	15	15	30	1.88
4267667--4267731	32	2.0	32	87	6	94	43	15	13	27	1.85
4268739--4269044	87	3.5	86	79	8	300	31	14	25	29	1.95
4273642--4273670	14	2.1	14	100	0	58	27	24	27	20	1.99
4274042--4274084	22	2.0	22	90	0	68	41	30	4	23	1.74
4274498--4274550	20	2.5	22	88	8	76	37	11	20	30	1.88
4282005--4282042	15	2.6	14	84	8	58	81	0	15	2	0.80
4282053--4282138	27	3.5	26	72	13	74	32	2	1	63	1.14
4283011--4283056	14	3.4	14	74	14	51	43	0	0	56	0.99
4283016--4283069	28	1.9	29	88	7	85	44	0	0	55	0.99
4288650--4288781	67	2.0	67	81	0	156	43	6	9	40	1.62
4289169--4289214	18	2.6	18	83	12	60	50	2	0	47	1.13
4289462--4289517	19	2.9	19	79	10	69	50	0	0	50	1.00
4289470--4289525	18	3.0	18	77	10	58	51	0	0	48	1.00
4289590--4289642	28	2.0	27	85	10	74	54	0	0	45	0.99
4289698--4289734	12	3.0	12	96	4	65	64	0	8	27	1.21
4290886--4290968	16	5.1	16	71	10	62	33	9	8	48	1.66
4290894--4290968	32	2.3	32	88	2	105	34	9	8	48	1.65
4291325--4291488	81	2.0	82	84	9	214	47	1	5	45	1.36
4292794--4292832	16	2.4	16	87	8	53	0	10	15	74	1.07
4292954--4292994	20	2.0	20	86	9	57	34	0	0	65	0.93
4293276--4293314	18	2.0	20	85	9	55	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4293385--4293425	21	2.0	21	85	0	55	26	0	0	73	0.84
4294043--4294081	19	2.1	19	90	0	60	56	2	2	38	1.27
4295896--4296087	79	2.4	79	83	1	224	30	18	27	23	1.97
4296039--4296108	28	2.5	28	88	0	95	24	17	35	22	1.95
4296098--4296319	52	4.3	51	81	2	237	32	11	25	30	1.91
4296302--4296372	27	2.6	28	88	2	99	22	19	33	23	1.97
4295988--4296488	263	1.9	263	90	1	799	31	12	26	29	1.93
4298974--4299052	21	3.8	21	89	5	124	32	12	16	37	1.86
4304586--4304624	17	2.3	17	86	0	51	41	0	0	58	0.98
4304953--4305007	16	3.6	16	79	13	53	41	1	3	52	1.29
4304909--4305020	52	2.2	52	84	9	140	43	0	1	53	1.17
4304929--4305037	15	6.9	15	71	17	78	44	0	1	53	1.17
4304916--4305024	21	5.0	21	71	13	69	44	0	1	53	1.17
4306226--4306276	23	2.3	22	80	6	59	52	0	0	47	1.00
4306785--4306818	15	2.4	14	85	9	50	58	0	0	41	0.98
4306790--4306839	17	2.9	17	79	11	57	56	0	0	44	0.99
4306760--4306836	40	1.9	40	82	10	95	55	0	2	41	1.13
4307815--4307910	26	3.8	24	75	14	86	41	1	1	56	1.13
4307807--4307988	26	7.3	26	65	18	84	41	2	0	56	1.16
4308405--4308459	22	2.5	22	80	13	62	38	1	3	56	1.28
4308406--4308479	22	3.3	22	72	25	57	41	1	2	54	1.23
4308866--4308902	14	2.6	15	79	12	51	62	0	0	37	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4309413--4309453	22	1.9	21	85	5	55	65	2	2	29	1.18
4312243--4312306	29	2.3	28	81	7	76	32	6	9	51	1.59
4312784--4312828	21	2.1	20	84	12	54	57	11	15	15	1.64
4315643--4315668	2	13.0	2	100	0	52	50	0	0	50	1.00
4317233--4317268	2	18.0	2	100	0	72	50	0	0	50	1.00
4317268--4317304	2	18.5	2	100	0	74	51	0	48	0	1.00
4317699--4317728	2	15.0	2	100	0	60	50	0	0	50	1.00
4320826--4320872	20	2.5	19	80	10	60	59	2	2	36	1.21
4322437--4322485	16	3.1	16	85	5	64	44	0	2	53	1.12
4322639--4322679	16	2.6	16	92	0	73	41	0	2	56	1.13
4323023--4323066	17	2.8	16	83	10	54	25	2	4	68	1.20
4323504--4323558	13	3.9	14	73	15	51	50	1	0	47	1.11
4323777--4323810	16	2.1	16	100	0	68	55	0	0	44	0.99
4323771--4323851	39	2.0	41	86	6	114	56	0	1	41	1.07
4323786--4323834	23	2.1	23	84	0	71	59	0	2	38	1.09
4323782--4323851	27	2.6	26	77	6	70	58	0	1	40	1.07
4324055--4324098	14	3.1	15	80	9	56	27	2	4	65	1.23
4324064--4324133	14	4.7	15	72	18	56	32	1	2	62	1.18
4324760--4324797	15	2.5	15	91	0	58	31	2	39	26	1.70
4325973--4325997	13	1.9	13	100	0	50	32	16	16	36	1.90
4326503--4326547	23	2.0	23	82	8	56	28	8	22	40	1.84
4327685--4327716	3	10.7	3	93	0	55	37	0	34	28	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4333413--4333737	79	4.2	79	81	9	382	32	15	24	27	1.95
4333412--4333686	76	3.6	75	84	6	370	33	15	25	26	1.95
4333379--4333737	155	2.3	153	85	5	454	33	13	24	27	1.94
4333674--4333851	51	3.5	50	83	4	182	34	11	25	29	1.90
4336126--4336181	20	2.8	20	89	7	87	42	16	16	25	1.87
4336115--4336144	13	2.3	13	100	0	60	40	13	16	30	1.87
4338837--4338876	20	2.0	21	90	5	64	50	7	7	35	1.59
4338998--4339055	28	2.1	28	96	0	107	29	15	13	41	1.86
4341524--4341688	51	3.2	51	90	3	233	36	13	21	27	1.92
4341624--4342162	79	6.8	79	92	1	834	32	15	25	27	1.95
4342092--4342213	53	2.3	52	86	10	162	29	13	27	28	1.95
4342190--4342472	143	2.0	141	96	1	521	28	19	30	21	1.97
4343590--4343789	27	7.2	27	83	10	251	16	31	7	45	1.74
4343615--4343681	35	1.9	35	96	0	125	17	34	5	41	1.74
4343582--4343761	62	3.1	62	82	11	227	16	32	6	44	1.74
4343650--4343789	53	2.6	53	91	1	235	15	29	7	47	1.74
4344576--4344715	37	3.8	37	90	1	208	40	16	22	21	1.91
4344576--4344715	75	1.9	74	87	1	208	40	16	22	21	1.91
4344891--4345065	61	2.9	61	80	9	214	28	20	25	25	1.99
4345107--4345408	55	5.4	54	85	8	392	24	20	26	27	1.99
4345108--4345403	115	2.7	110	87	5	409	24	20	26	28	1.99
4345298--4345381	27	3.2	26	66	10	71	29	21	22	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4345324--4345406	26	3.2	26	68	10	78	27	21	24	26	1.99
4345332--4345503	94	1.8	93	91	3	283	25	19	29	26	1.98
4345424--4345557	55	2.4	54	91	3	214	20	20	30	27	1.98
4345270--4345627	149	2.4	147	89	3	544	25	19	28	26	1.99
4345480--4345726	99	2.5	99	89	5	364	25	19	30	25	1.98
4345673--4345781	54	2.0	55	91	5	177	24	20	27	27	1.99
4345573--4345880	154	2.0	154	95	2	557	25	18	31	24	1.98
4345726--4345911	100	1.9	100	91	2	311	25	18	31	24	1.98
4351997--4352111	51	2.2	53	84	6	146	37	13	21	27	1.91
4352044--4352431	79	4.9	79	92	0	634	31	14	26	27	1.95

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27