genome.fa.s18.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold18
Parameters: 2 7 7 80 10 50 1000
Length:  4432388

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  4  of  27  ( 3197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
471310--471363	20	2.7	20	82	0	72	51	7	11	29	1.64
475613--475676	27	2.4	27	97	0	119	57	26	0	15	1.38
475627--475692	27	2.8	24	82	13	66	60	25	0	13	1.33
477639--477713	21	3.7	21	80	7	82	32	20	14	33	1.92
477750--477913	20	7.8	20	78	16	163	25	17	15	42	1.88
480202--480334	53	2.6	51	84	5	178	27	26	12	33	1.92
480266--480442	79	2.2	79	89	2	284	25	24	16	32	1.96
486606--487202	60	9.9	60	74	10	402	24	27	18	29	1.98
486641--486932	123	2.4	123	89	2	435	25	28	20	26	1.99
486997--487201	61	3.4	61	91	2	324	25	26	20	27	1.99
489576--489753	79	2.3	78	89	1	266	26	25	15	32	1.96
491474--491677	77	2.6	77	76	5	207	32	14	17	35	1.90
492334--492464	58	2.3	56	85	6	165	44	16	11	28	1.82
492378--492464	28	3.1	27	67	14	68	45	16	10	27	1.79
492895--492941	18	2.5	19	93	3	78	70	19	0	10	1.16
494671--494713	19	2.3	18	84	4	50	4	13	4	76	1.10
494686--494725	14	2.8	13	82	17	53	0	12	0	87	0.54
494686--494725	18	2.3	17	87	12	55	0	12	0	87	0.54
494686--494723	10	3.7	10	86	6	58	0	13	0	86	0.56
494694--494727	11	2.9	12	86	8	52	0	14	0	85	0.60
494686--494727	15	2.9	15	85	3	59	0	14	0	85	0.59
496515--496563	22	2.2	22	92	0	80	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
500014--500040	13	2.1	13	100	0	54	29	14	14	40	1.86
504825--504849	13	1.9	13	100	0	50	36	16	16	32	1.90
504911--504967	13	3.9	13	76	24	60	33	17	14	35	1.90
504890--504986	32	3.0	32	95	0	167	36	17	11	35	1.86
504892--505007	19	6.7	19	74	22	112	36	18	11	34	1.86
505862--505890	14	2.1	14	100	0	58	44	0	0	55	0.99
506729--506765	18	2.1	18	90	10	58	70	0	0	29	0.88
506732--506806	38	1.9	39	86	7	109	58	0	1	40	1.06
507929--508010	16	4.8	16	68	19	58	53	7	2	36	1.42
507945--508001	22	2.5	22	83	8	71	52	5	3	38	1.41
508448--508531	13	5.9	13	70	19	53	44	0	1	54	1.07
509337--509373	18	2.1	18	89	0	56	48	0	0	51	1.00
509342--509419	21	3.5	24	69	20	62	46	0	0	53	1.00
509865--509956	29	3.1	29	77	12	80	57	0	2	40	1.11
509918--509971	14	3.8	15	73	11	51	55	0	0	44	0.99
511076--511100	2	12.5	2	100	0	50	52	0	48	0	1.00
514017--514089	35	2.1	35	89	0	110	35	16	1	46	1.56
515169--515197	2	14.5	2	100	0	58	51	0	0	48	1.00
515203--515307	54	1.9	54	98	0	201	40	11	17	31	1.85
515799--515860	20	3.0	20	86	6	72	35	0	1	62	1.05
515853--515895	11	4.1	11	82	8	54	30	2	0	67	1.03
515853--515892	21	2.0	21	90	5	64	30	2	0	67	1.04
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516945--516978	2	17.0	2	100	0	68	50	0	0	50	1.00
517777--517820	20	2.3	19	80	7	54	56	2	4	36	1.32
518897--518931	17	2.1	17	88	0	52	28	0	0	71	0.86
519586--519669	30	2.9	30	83	13	88	47	0	0	52	1.00
519586--519675	28	3.2	29	72	23	86	46	0	0	53	1.00
519655--519688	15	2.2	16	89	5	52	44	0	0	55	0.99
520275--520309	8	4.6	8	86	13	56	71	8	20	0	1.11
520275--520302	14	2.0	14	100	0	56	71	7	21	0	1.09
531481--531601	52	2.3	52	97	0	224	28	18	18	34	1.94
531481--531621	52	2.7	51	90	4	212	30	17	18	33	1.94
531610--531634	13	1.9	13	100	0	50	36	16	16	32	1.90
531700--531724	13	1.9	13	100	0	50	32	16	16	36	1.90
531678--531744	33	2.0	33	88	0	98	40	13	11	34	1.81
547053--547079	13	2.1	13	100	0	54	29	14	14	40	1.86
547063--547119	19	2.9	19	89	2	87	31	15	17	35	1.92
547148--547201	20	2.7	20	82	0	63	37	14	12	35	1.85
552034--552162	52	2.5	52	98	0	249	27	18	18	34	1.95
552171--552195	13	1.9	13	100	0	50	36	16	16	32	1.90
552233--552333	32	3.1	32	95	1	175	35	16	11	35	1.86
552257--552313	13	3.9	13	76	24	60	33	17	14	35	1.90
552238--552333	19	5.6	19	70	28	81	35	16	12	35	1.87
557032--557068	13	2.8	13	83	0	56	35	13	13	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559404--559451	21	2.4	19	74	12	51	35	8	8	47	1.64
559599--559625	13	2.1	13	100	0	54	29	14	14	40	1.86
559609--559665	19	2.9	19	89	2	87	31	17	15	35	1.92
559695--559759	33	2.0	33	84	6	87	35	12	16	35	1.87
564424--564492	19	4.1	18	75	24	78	34	11	15	37	1.84
564449--564506	13	4.0	13	74	23	53	34	15	15	34	1.89
564430--564509	32	2.5	32	93	2	135	33	13	17	35	1.89
564544--564569	13	2.0	13	100	0	52	30	15	15	38	1.88
568165--568212	21	2.4	19	74	12	51	35	8	8	47	1.64
568360--568386	13	2.1	13	100	0	54	29	14	14	40	1.86
568370--568426	19	2.9	19	89	2	87	31	17	15	35	1.92
568456--568520	33	2.0	33	84	6	87	35	12	16	35	1.87
573185--573253	19	4.1	18	75	24	78	34	11	15	37	1.84
573210--573267	13	4.0	13	74	23	53	34	15	15	34	1.89
573191--573270	32	2.5	32	93	2	135	33	13	17	35	1.89
573305--573330	13	2.0	13	100	0	52	30	15	15	38	1.88
575688--575820	51	2.6	52	79	3	171	28	27	12	31	1.92
575802--575876	27	2.7	27	82	13	91	26	29	17	26	1.97
576226--576298	28	2.6	28	89	4	112	23	30	20	26	1.99
575829--576272	79	5.6	79	92	0	692	25	26	16	31	1.97
576149--576379	107	2.2	107	81	4	270	26	25	16	31	1.96
576254--576431	79	2.3	79	85	0	239	26	26	15	30	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
581312--581440	52	2.5	52	94	0	231	27	17	19	35	1.94
581428--581453	13	2.0	13	100	0	52	38	15	15	30	1.88
581498--581549	13	3.5	13	73	26	50	36	17	13	32	1.89
581506--581569	19	3.7	18	76	23	75	37	17	12	32	1.87
581498--581568	32	2.2	32	97	0	133	36	18	12	32	1.88
587002--587132	50	2.6	50	78	9	140	32	9	25	32	1.89
589493--589518	13	2.0	13	100	0	52	38	15	15	30	1.88
589505--589546	21	2.0	21	95	0	75	28	21	9	40	1.84
589714--589750	11	3.1	13	81	18	53	21	0	0	78	0.75
589713--589750	19	2.1	18	90	5	58	21	0	0	78	0.74
590447--590617	61	2.8	62	77	3	159	29	18	26	25	1.98
590566--590710	55	2.6	55	83	2	175	28	22	22	26	1.99
590755--590970	120	1.8	116	80	8	256	39	12	26	21	1.89
590942--591363	55	7.4	56	79	5	318	24	20	27	27	1.99
591011--591363	55	6.3	55	80	5	343	23	20	27	28	1.99
590211--591216	506	2.0	506	95	0	1807	33	16	26	23	1.96
590942--591363	110	3.7	110	80	7	418	24	20	27	27	1.99
591386--591793	55	7.3	55	88	4	559	23	21	27	27	1.99
591064--591652	165	3.7	154	78	8	535	24	20	27	27	1.99
591433--591519	28	3.1	28	63	3	77	31	18	22	27	1.97
591063--591656	314	1.9	314	89	0	920	25	19	27	27	1.99
591813--592059	55	4.4	54	84	8	305	24	23	27	25	2.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591803--592039	117	2.0	116	89	2	359	26	21	27	24	1.99
591548--592252	266	2.7	266	97	0	1320	25	21	28	24	1.99
592083--592285	62	3.4	61	86	6	278	26	21	27	25	1.99
593251--593327	1	77.0	1	75	0	64	0	2	10	87	0.65
593251--593326	16	4.3	18	79	16	88	0	2	10	86	0.66
593251--593324	33	2.2	34	85	9	98	0	2	10	86	0.67
593251--593327	23	3.5	22	82	8	93	0	2	10	87	0.65
593251--593327	35	2.3	33	86	8	102	0	2	10	87	0.65
595229--595322	47	2.0	47	95	0	170	25	23	13	37	1.92
605747--605927	79	2.3	79	85	1	229	30	17	27	24	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27