genome.fa.s18.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold18
Parameters: 2 7 7 80 10 50 1000
Length:  4432388

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  23  of  27  ( 3197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3702694--3702782	34	2.8	31	85	10	108	31	21	14	32	1.93
3703236--3703306	32	2.2	32	89	0	106	40	11	18	29	1.85
3703340--3703391	20	2.7	19	85	11	70	42	15	15	26	1.87
3704728--3704754	13	2.1	13	100	0	54	40	14	14	29	1.86
3709891--3709951	32	1.9	32	89	0	95	42	16	18	22	1.89
3720741--3720944	29	7.0	29	83	1	237	24	29	13	32	1.93
3720917--3721002	34	2.5	34	88	0	118	19	27	12	39	1.88
3721011--3721257	31	7.9	31	85	4	300	31	29	17	21	1.96
3721011--3721257	62	4.0	62	84	4	334	31	29	17	21	1.96
3721011--3721257	126	2.0	124	87	6	356	31	29	17	21	1.96
3721430--3721529	52	1.9	53	82	10	125	25	27	18	30	1.98
3722277--3722302	13	2.0	13	100	0	52	38	15	15	30	1.88
3724520--3724564	21	2.1	21	84	8	56	53	4	20	22	1.63
3728476--3728501	13	2.0	13	100	0	52	30	15	15	38	1.88
3731046--3731071	13	2.0	13	100	0	52	38	15	15	30	1.88
3733329--3733365	19	1.9	19	88	0	56	72	0	16	10	1.10
3733538--3733590	16	3.3	16	73	7	54	26	16	13	43	1.85
3739269--3739309	20	2.0	21	90	9	66	41	24	17	17	1.89
3741708--3741750	23	1.9	22	85	4	59	60	0	0	39	0.97
3741733--3741762	16	1.9	15	93	6	51	60	0	0	40	0.97
3749016--3749085	20	3.5	20	80	2	68	42	15	11	30	1.82
3753239--3753581	141	2.4	142	85	5	430	41	11	12	34	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3754330--3754379	10	5.0	10	82	4	57	0	22	2	76	0.89
3754330--3754380	21	2.4	21	90	6	77	0	23	1	74	0.92
3754973--3755286	166	1.9	167	88	3	481	45	8	14	31	1.76
3755027--3755459	166	2.6	164	81	5	415	48	8	12	30	1.71
3760095--3760168	20	3.7	19	84	10	85	41	12	10	35	1.77
3760021--3760259	112	2.1	112	85	0	316	38	12	13	35	1.83
3762150--3762201	20	2.6	20	96	0	95	36	11	17	34	1.86
3762166--3762325	52	3.1	52	92	0	248	36	14	15	33	1.87
3763093--3763144	19	2.7	20	87	3	70	32	17	15	34	1.91
3764806--3764843	9	4.2	9	89	0	58	44	0	31	23	1.54
3765268--3765309	15	2.6	16	81	11	50	54	4	9	30	1.53
3765281--3765315	15	2.3	15	90	0	52	54	2	11	31	1.51
3769561--3769608	21	2.4	21	86	13	66	35	20	2	41	1.64
3769561--3769601	21	2.0	22	90	9	68	31	19	2	46	1.63
3771933--3771982	20	2.5	20	87	6	66	30	18	12	40	1.86
3771950--3772014	32	2.0	32	84	3	85	30	15	13	40	1.86
3771981--3772035	19	2.8	19	86	2	74	32	20	12	34	1.90
3772062--3772099	20	1.9	20	94	0	67	39	7	18	34	1.80
3774097--3774166	36	2.0	35	88	8	106	34	10	25	30	1.89
3775659--3775713	28	2.0	28	96	0	101	20	30	20	29	1.97
3775661--3775733	28	2.6	27	87	8	94	20	34	21	23	1.97
3775687--3776000	79	4.0	78	84	5	398	26	25	14	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3778041--3778065	4	6.2	4	100	0	50	24	0	0	76	0.80
3780938--3780975	1	38.0	1	89	0	58	94	5	0	0	0.30
3780975--3781056	21	4.1	20	84	6	103	36	17	12	34	1.87
3780975--3781056	41	2.0	40	88	6	121	36	17	12	34	1.87
3781092--3781159	19	3.9	19	78	21	85	35	11	14	38	1.83
3781094--3781156	32	2.0	32	96	0	117	34	12	15	36	1.86
3781113--3781137	13	1.9	13	100	0	50	36	16	16	32	1.90
3781199--3781224	13	2.0	13	100	0	52	30	15	15	38	1.88
3781179--3781245	33	2.0	33	88	0	98	25	14	16	43	1.86
3783588--3783930	51	6.5	53	71	16	214	29	25	12	32	1.93
3783705--3783773	27	2.5	27	88	2	93	24	31	21	21	1.98
3783588--3783929	105	3.2	104	71	14	329	29	25	12	32	1.93
3783914--3783991	28	2.7	29	90	2	113	23	32	20	24	1.98
3793214--3793398	55	3.4	55	84	3	239	29	29	20	21	1.98
3793414--3793546	56	2.4	56	81	5	171	29	24	21	24	1.99
3793263--3793712	150	3.0	147	84	6	555	26	28	18	26	1.98
3793470--3793643	94	1.9	94	88	2	269	27	27	19	25	1.99
3793586--3793761	61	2.9	61	84	5	232	25	26	19	28	1.99
3793742--3793935	42	4.5	42	80	7	194	21	24	12	41	1.88
3793763--3793930	87	2.0	85	85	7	232	20	25	10	44	1.83
3793941--3794040	40	2.5	40	83	6	121	18	28	11	43	1.83
3794565--3794673	20	5.8	20	69	14	79	28	16	14	40	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3797207--3797260	28	2.0	27	92	3	90	22	31	16	29	1.96
3797209--3797279	28	2.6	27	84	10	83	22	33	19	23	1.97
3797122--3797361	108	2.2	107	86	6	317	25	25	16	32	1.96
3797234--3797547	79	4.0	79	83	3	373	27	24	14	34	1.94
3798965--3799033	21	3.2	22	72	11	63	52	2	21	23	1.61
3802028--3802078	19	2.6	19	87	3	66	31	17	13	37	1.89
3804232--3804300	21	3.3	22	82	6	72	59	1	20	18	1.46
3805141--3805235	36	2.9	32	79	13	86	26	21	16	35	1.94
3811048--3811143	36	2.9	33	82	11	117	32	22	11	33	1.90
3811519--3811558	20	2.0	20	95	0	71	40	12	10	37	1.77
3811701--3811767	34	2.0	34	85	2	91	37	11	14	35	1.84
3817399--3818057	61	11.4	58	88	6	752	25	27	20	25	1.99
3817673--3817756	26	3.0	28	66	16	75	28	29	20	21	1.98
3817396--3818054	55	11.5	55	85	8	718	26	27	20	25	1.99
3818034--3818256	119	1.9	117	81	11	276	21	25	14	38	1.91
3818918--3818967	19	2.6	19	96	0	91	32	12	18	38	1.87
3818992--3819033	21	2.0	21	90	0	66	45	11	16	26	1.82
3819020--3819045	13	2.0	13	100	0	52	30	15	15	38	1.88
3821535--3821605	28	2.5	28	88	0	106	25	28	21	25	1.99
3821459--3821686	104	2.2	104	87	2	312	26	27	16	29	1.97
3821563--3821842	79	3.6	78	82	2	328	27	25	15	31	1.96
3821563--3821879	79	4.0	78	78	6	302	27	24	14	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3823622--3823761	52	2.7	52	85	2	174	32	17	11	39	1.85
3830678--3830727	1	50.0	1	93	0	73	94	0	2	4	0.38
3830681--3830729	25	2.0	25	100	0	98	89	0	2	8	0.55
3830732--3830788	21	2.7	21	97	0	105	33	10	19	36	1.86
3830844--3830911	19	3.9	19	78	21	85	35	11	14	38	1.83
3830865--3830889	13	1.9	13	100	0	50	36	16	16	32	1.90
3830846--3830908	32	2.0	32	96	0	117	34	12	15	36	1.86
3830951--3830976	13	2.0	13	100	0	52	30	15	15	38	1.88
3830931--3830997	33	2.0	33	88	0	98	25	14	16	43	1.86
3833449--3833521	27	2.6	29	81	14	91	24	34	20	20	1.97
3833504--3833674	51	3.3	51	79	4	198	29	26	11	32	1.92
3833657--3833738	28	2.9	28	82	7	96	24	31	17	26	1.97
3882366--3882425	9	6.8	9	75	7	52	85	5	10	0	0.75
3882363--3882393	11	2.8	11	90	0	53	90	6	3	0	0.55
3883391--3884068	55	12.3	55	93	2	1016	29	30	20	20	1.98
3883629--3883772	29	5.2	29	65	18	108	28	32	19	19	1.96
3883658--3883802	26	5.3	26	65	15	87	28	32	18	20	1.96
3884663--3884708	1	46.0	1	93	0	65	93	0	2	4	0.41
3884660--3884708	25	2.0	25	100	0	98	87	0	4	8	0.65
3884664--3884710	24	2.0	24	100	0	94	89	0	2	8	0.57
3884713--3884769	21	2.7	21	97	0	105	33	10	19	36	1.86
3884825--3884892	19	3.9	19	78	21	85	35	11	14	38	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3884846--3884870	13	1.9	13	100	0	50	36	16	16	32	1.90
3884827--3884889	32	2.0	32	96	0	117	34	12	15	36	1.86
3884932--3884957	13	2.0	13	100	0	52	30	15	15	38	1.88
3884912--3884978	33	2.0	33	88	0	98	25	14	16	43	1.86
3887429--3887501	27	2.6	29	81	14	91	24	34	20	20	1.97
3887484--3887654	51	3.3	51	79	4	198	29	26	11	32	1.92
3887637--3887718	28	2.9	28	82	7	96	24	31	17	26	1.97
3890046--3890553	149	3.4	149	86	2	655	37	19	17	25	1.94
3892321--3892356	10	3.8	9	89	10	54	0	13	2	83	0.76
3892657--3892716	5	11.8	5	73	16	52	75	1	3	20	1.04

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27