genome.fa.s18.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold18
Parameters: 2 7 7 80 10 50 1000
Length:  4432388

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  8  of  27  ( 3197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1073848--1074019	86	2.0	87	88	3	258	27	31	17	23	1.97
1074004--1074077	35	2.1	34	85	2	103	21	33	9	35	1.86
1074069--1074257	33	5.8	33	85	7	246	29	34	18	16	1.93
1074069--1074257	97	1.9	97	93	2	326	29	34	18	16	1.93
1074069--1074266	64	3.1	64	89	2	301	29	35	18	16	1.93
1074264--1075050	43	16.8	44	72	16	559	25	24	18	31	1.98
1074254--1075106	95	9.1	94	91	2	1342	25	24	18	31	1.97
1075007--1075144	52	2.6	52	84	3	177	25	24	15	34	1.94
1075962--1076056	32	2.9	32	90	1	136	37	10	16	34	1.84
1081231--1081293	24	2.7	23	78	7	72	11	6	9	73	1.26
1082254--1082331	20	3.8	21	83	8	97	39	10	11	38	1.76
1082356--1082636	32	8.7	31	76	5	229	30	29	18	20	1.97
1082349--1082619	64	4.2	64	79	6	298	29	31	17	21	1.96
1082418--1082636	97	2.3	97	79	2	217	30	29	19	21	1.97
1082349--1082623	129	2.1	129	97	0	534	30	31	17	21	1.96
1082704--1082951	52	4.8	52	76	3	221	23	21	18	36	1.95
1083032--1083146	52	2.2	52	80	0	140	22	23	14	39	1.91
1087312--1087387	21	3.7	21	68	7	57	40	15	17	26	1.89
1087330--1087385	20	2.7	21	80	5	60	39	16	17	26	1.91
1089888--1090184	100	3.0	98	81	7	361	30	22	10	36	1.88
1092975--1093025	1	51.0	1	94	0	75	94	0	1	3	0.38
1092972--1093027	27	2.1	27	100	0	112	85	0	3	10	0.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1093030--1093086	21	2.7	21	97	0	105	33	10	19	36	1.86
1093142--1093209	19	3.9	19	78	21	85	35	11	14	38	1.83
1093163--1093187	13	1.9	13	100	0	50	36	16	16	32	1.90
1093144--1093206	32	2.0	32	96	0	117	34	12	15	36	1.86
1093249--1093274	13	2.0	13	100	0	52	30	15	15	38	1.88
1093229--1093295	33	2.0	33	88	0	98	25	14	16	43	1.86
1095748--1095820	27	2.6	29	81	14	91	24	34	20	20	1.97
1095803--1095973	51	3.3	51	79	4	198	29	26	11	32	1.92
1095956--1096037	28	2.9	28	82	7	96	24	31	17	26	1.97
1108431--1108491	9	6.8	9	76	10	54	85	4	9	0	0.74
1109457--1110134	55	12.3	55	92	2	1007	29	29	20	20	1.98
1109695--1109838	29	5.2	29	65	18	108	28	32	19	19	1.96
1109724--1109868	26	5.3	26	65	15	87	28	32	18	20	1.96
1110685--1110729	1	45.0	1	93	0	63	93	0	2	4	0.41
1110682--1110731	24	2.1	24	100	0	100	84	0	4	12	0.76
1110734--1110790	21	2.7	21	97	0	105	33	10	19	36	1.86
1110846--1110913	19	3.9	19	78	21	85	35	11	14	38	1.83
1110867--1110891	13	1.9	13	100	0	50	36	16	16	32	1.90
1110848--1110910	32	2.0	32	96	0	117	34	12	15	36	1.86
1110953--1110978	13	2.0	13	100	0	52	30	15	15	38	1.88
1110933--1110999	33	2.0	33	88	0	98	25	14	16	43	1.86
1113453--1113525	27	2.6	29	81	14	91	24	34	20	20	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1113508--1113678	51	3.3	51	79	4	198	29	26	11	32	1.92
1113661--1113742	28	2.9	28	82	7	96	24	31	17	26	1.97
1119212--1119289	32	2.4	32	91	0	120	34	19	14	32	1.91
1119244--1119268	13	1.9	13	100	0	50	32	16	16	36	1.90
1120088--1121290	91	13.0	91	87	5	1578	30	18	25	25	1.98
1121353--1121553	33	6.0	34	74	12	132	32	13	33	19	1.92
1121386--1121521	36	4.0	35	75	7	118	34	13	33	18	1.89
1121487--1121673	31	6.1	30	78	12	182	29	15	30	24	1.96
1122919--1122967	6	8.2	6	86	6	64	0	0	16	83	0.64
1122919--1122967	24	2.0	24	92	0	80	0	0	16	83	0.64
1124764--1124806	20	2.2	20	95	0	77	32	11	30	25	1.91
1129953--1130007	20	2.8	20	88	5	76	38	12	16	32	1.86
1131034--1131567	43	11.7	43	77	10	474	30	18	26	24	1.98
1130982--1131573	91	6.4	91	90	1	860	30	18	26	24	1.98
1131357--1131573	48	4.7	48	80	8	247	29	18	26	25	1.98
1146478--1146827	28	12.5	27	82	6	387	30	28	17	23	1.97
1146473--1146846	84	4.4	84	85	4	468	29	28	17	23	1.97
1154771--1154795	13	1.9	13	100	0	50	36	16	16	32	1.90
1154848--1154912	19	3.7	19	73	23	70	38	15	12	33	1.85
1154840--1154910	32	2.2	32	94	0	124	36	16	12	33	1.87
1154867--1154891	13	1.9	13	100	0	50	32	16	16	36	1.90
1155623--1156909	49	27.0	47	78	9	1069	31	18	26	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1155713--1156898	92	12.5	93	80	11	946	31	18	26	24	1.97
1156491--1156554	21	3.0	22	65	28	55	35	15	20	28	1.93
1156351--1156898	135	4.0	135	87	2	727	31	18	25	24	1.98
1156930--1157298	34	10.7	34	85	4	431	34	11	32	21	1.89
1157290--1157543	31	8.3	31	82	8	306	30	16	28	24	1.96
1157285--1157543	61	4.2	61	84	7	296	30	15	28	25	1.96
1157308--1157543	92	2.6	92	88	3	343	30	16	27	25	1.97
1158804--1158839	15	2.4	15	95	0	63	0	0	13	86	0.58
1165808--1165893	45	1.9	45	95	0	154	27	22	18	31	1.97
1165902--1165926	13	1.9	13	100	0	50	36	16	16	32	1.90
1165971--1166022	13	3.5	13	73	26	50	36	17	13	32	1.89
1165971--1166039	32	2.2	32	94	0	120	37	17	11	33	1.86
1166465--1166619	51	3.3	50	72	24	172	43	12	15	28	1.83
1166515--1166589	20	3.8	20	81	0	105	42	12	13	32	1.80
1166512--1166589	40	2.0	39	92	2	129	42	12	12	32	1.81
1169087--1169123	18	2.1	18	100	0	74	40	21	21	16	1.91
1176045--1176083	20	2.0	19	85	5	51	41	10	17	30	1.83
1178198--1178235	20	1.9	19	89	5	58	31	18	21	28	1.97
1178559--1179130	165	3.5	164	84	6	685	52	7	10	29	1.64
1178559--1179130	164	3.5	166	84	8	695	52	7	10	29	1.64
1188023--1188202	79	2.3	79	86	2	247	33	15	22	28	1.94
1188136--1188253	51	2.3	51	85	11	170	33	11	23	31	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1188238--1188308	28	2.6	27	76	14	74	28	22	26	22	1.99
1188189--1188463	106	2.6	107	82	2	367	33	14	23	28	1.94
1188345--1188414	28	2.5	27	86	9	88	27	17	28	27	1.97
1190862--1190935	20	3.7	19	82	7	85	43	14	14	27	1.85
1191290--1191342	20	2.7	20	88	5	72	32	16	13	37	1.88
1200486--1200859	166	2.3	166	84	2	475	31	11	7	49	1.67
1201512--1201550	11	3.5	11	89	6	53	82	0	17	0	0.68
1205056--1205183	50	2.5	51	93	2	222	43	10	19	26	1.83
1205147--1205223	20	3.8	20	79	6	84	41	12	14	31	1.83
1209796--1210095	97	3.1	97	83	3	388	37	12	22	27	1.90
1212129--1212301	52	3.3	52	97	0	319	45	15	12	26	1.81
1212177--1212259	20	3.2	26	67	32	70	48	13	13	25	1.78
1212358--1212411	20	2.7	20	79	2	63	37	14	7	40	1.74
1214140--1214197	20	3.0	20	84	2	73	31	10	12	46	1.74
1214237--1214261	13	1.9	13	100	0	50	32	16	16	36	1.90
1214270--1214394	52	2.4	52	90	0	187	36	17	16	28	1.92
1222910--1222935	13	2.0	13	100	0	52	38	15	15	30	1.88
1222975--1223039	33	2.0	33	87	0	94	40	13	12	33	1.82
1222995--1223019	13	1.9	13	100	0	50	32	16	16	36	1.90
1224203--1224316	49	2.3	50	86	3	149	28	14	14	42	1.85
1227255--1227404	80	1.9	80	83	4	198	33	12	25	28	1.92
1230938--1231231	76	3.9	75	80	8	305	40	11	24	23	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1230927--1231231	152	2.0	149	82	5	364	41	11	23	23	1.87
1231180--1231264	41	2.1	41	84	4	109	40	11	25	22	1.88
1231299--1231550	73	3.4	73	78	11	257	32	17	25	24	1.97
1231261--1231614	71	4.9	72	77	10	336	33	17	24	24	1.96
1231572--1231670	44	2.3	43	87	3	135	43	14	24	18	1.86
1232426--1232476	25	2.0	25	96	0	93	54	7	7	29	1.57
1238339--1238408	20	3.5	20	92	0	113	38	8	18	34	1.81
1238339--1238428	20	4.5	20	87	2	94	38	7	17	35	1.79
1238467--1238577	31	3.5	31	86	3	134	28	13	16	41	1.86
1240931--1241019	27	3.3	26	81	7	90	25	25	20	28	1.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27