genome.fa.s18.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold18
Parameters: 2 7 7 80 10 50 1000
Length:  4432388

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  22  of  27  ( 3197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3573083--3573107	13	1.9	13	100	0	50	32	16	16	36	1.90
3573062--3573127	32	2.0	33	88	2	98	39	15	12	33	1.84
3573397--3573695	79	3.8	77	83	6	352	30	26	11	31	1.91
3573397--3573697	156	1.9	158	83	6	389	30	26	11	31	1.92
3573629--3573758	51	2.6	51	86	4	178	30	22	10	36	1.88
3576561--3576601	21	2.0	21	85	9	57	39	12	9	39	1.76
3576681--3576817	53	2.6	53	96	1	247	37	18	17	27	1.93
3576862--3576916	22	2.4	22	81	6	65	30	20	10	38	1.87
3576926--3576964	13	3.0	13	92	0	69	30	15	17	35	1.91
3576960--3576989	14	2.1	14	100	0	60	50	13	6	30	1.67
3580030--3580071	12	3.5	13	81	15	54	76	4	11	7	1.15
3580031--3580098	12	5.7	12	75	16	52	76	5	11	5	1.14
3581376--3582011	61	10.3	61	83	3	670	25	24	19	30	1.98
3581996--3582306	41	7.4	41	82	5	309	22	23	13	40	1.89
3582280--3582417	34	3.9	34	74	11	132	21	20	16	42	1.90
3582239--3582412	77	2.3	75	83	3	215	22	21	13	42	1.88
3585413--3585818	79	5.2	78	79	5	363	28	23	13	33	1.93
3585411--3585834	156	2.7	155	78	8	428	29	23	13	34	1.93
3588031--3588090	21	2.9	21	72	22	63	20	28	1	50	1.58
3588534--3588579	24	1.9	24	82	8	58	23	28	2	45	1.65
3589682--3589914	36	6.9	34	75	14	207	29	23	12	34	1.92
3589686--3589915	68	3.4	67	85	4	320	30	23	12	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3590362--3590396	13	2.7	13	81	0	52	37	17	14	31	1.89
3590607--3590650	22	2.1	21	87	8	63	36	9	9	45	1.68
3593986--3594157	79	2.2	79	86	0	236	28	16	27	27	1.97
3594088--3594209	51	2.4	50	82	4	145	29	12	28	29	1.93
3594013--3594285	130	2.1	129	82	0	321	31	13	25	29	1.94
3594144--3594473	79	4.2	79	80	0	338	32	15	24	27	1.95
3594349--3594591	107	2.3	107	88	0	378	34	15	23	26	1.94
3594431--3594499	28	2.5	28	82	0	84	27	18	27	26	1.98
3594538--3594593	28	2.0	28	92	0	94	37	16	23	23	1.93
3598287--3598312	13	2.0	13	100	0	52	30	15	15	38	1.88
3598267--3598330	32	2.0	33	90	3	103	28	14	18	39	1.90
3598267--3598337	19	4.0	18	72	25	62	26	12	21	39	1.89
3602018--3602056	13	3.0	13	100	0	78	38	15	15	30	1.88
3605953--3605997	22	2.1	21	84	8	56	22	17	4	55	1.60
3605948--3605997	21	2.3	20	80	10	55	22	16	4	58	1.55
3606856--3606973	59	2.0	59	98	0	227	26	18	14	40	1.89
3608277--3608302	13	2.0	13	100	0	52	30	15	15	38	1.88
3608257--3608320	32	2.0	33	90	3	103	28	14	18	39	1.90
3608257--3608327	19	4.0	18	72	25	62	26	12	21	39	1.89
3609004--3609426	79	5.4	77	78	8	406	37	9	23	29	1.86
3609004--3609426	158	2.7	153	80	9	456	37	9	23	29	1.86
3613253--3613341	16	5.4	16	72	5	70	28	1	13	57	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3613253--3613336	32	2.5	33	84	7	100	26	0	14	59	1.35
3617232--3617282	25	2.0	25	96	0	93	35	19	7	37	1.81
3618922--3618947	13	2.0	13	100	0	52	30	15	15	38	1.88
3618901--3618965	34	2.0	32	88	11	96	27	16	16	38	1.91
3619890--3619920	5	6.2	5	100	0	62	58	0	0	41	0.98
3623454--3623506	20	2.7	20	85	8	72	35	15	18	30	1.92
3630463--3630669	79	2.6	80	86	1	292	28	27	14	30	1.95
3630627--3630738	51	2.2	51	88	0	170	31	29	8	30	1.88
3630726--3630797	28	2.5	28	86	2	90	25	31	13	29	1.94
3630720--3630797	29	2.7	29	84	2	104	24	30	16	28	1.97
3630596--3630905	159	1.9	159	82	2	381	27	28	11	32	1.92
3630777--3630899	51	2.4	51	80	12	153	26	27	13	31	1.94
3630855--3631058	79	2.6	77	76	9	171	28	24	12	35	1.91
3634580--3634620	3	13.7	3	84	0	55	29	29	0	41	1.56
3635123--3635465	165	2.1	165	84	4	442	31	10	8	49	1.66
3635781--3635824	20	2.3	19	84	4	52	72	2	6	18	1.17
3637408--3637924	149	3.5	146	81	4	569	26	16	17	39	1.91
3639338--3639400	28	2.2	28	94	5	110	19	22	28	30	1.98
3639354--3639419	28	2.4	28	84	0	78	19	22	33	24	1.97
3639502--3639541	14	2.6	16	81	18	50	20	5	7	67	1.34
3644376--3644646	130	2.1	130	82	6	327	28	23	13	34	1.92
3644507--3644736	79	2.9	79	78	8	243	27	24	14	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3655326--3655356	7	4.6	7	96	4	55	90	0	0	9	0.46
3655411--3655478	19	3.9	19	78	21	85	35	11	14	38	1.83
3655432--3655456	13	1.9	13	100	0	50	36	16	16	32	1.90
3655413--3655475	32	2.0	32	96	0	117	34	12	15	36	1.86
3655518--3655543	13	2.0	13	100	0	52	30	15	15	38	1.88
3655498--3655564	33	2.0	33	88	0	98	25	14	16	43	1.86
3657912--3658247	53	6.4	52	71	10	200	30	26	11	31	1.92
3658022--3658094	27	2.7	27	87	6	94	23	35	21	19	1.96
3658077--3658247	51	3.3	51	81	4	207	29	26	11	32	1.91
3658230--3658311	28	2.9	28	82	7	96	24	31	17	26	1.97
3657912--3658303	212	1.8	212	86	3	565	29	27	12	30	1.93
3660641--3660667	13	2.1	13	100	0	54	40	14	14	29	1.86
3660622--3660687	33	2.0	33	87	0	96	40	10	16	31	1.83
3661556--3662188	48	13.5	51	70	15	268	31	18	25	25	1.97
3661556--3662235	39	14.6	49	71	14	338	30	17	25	25	1.97
3661500--3661823	101	3.2	101	82	4	354	34	17	23	23	1.96
3661500--3662090	87	6.3	101	84	5	396	31	17	25	25	1.97
3661740--3662087	87	4.0	87	89	1	489	28	18	26	27	1.98
3662099--3662238	43	3.3	43	86	0	181	31	18	25	25	1.98
3662234--3662859	34	19.8	34	74	13	429	36	12	30	20	1.89
3662296--3662728	61	7.1	60	75	16	381	35	12	30	21	1.90
3662295--3662880	27	19.0	27	72	19	247	35	12	30	21	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3662390--3662790	123	3.3	123	91	0	658	36	12	30	20	1.90
3662602--3662880	96	2.9	94	82	11	283	36	11	30	21	1.89
3662703--3662824	62	2.0	63	85	6	169	36	12	29	21	1.90
3662868--3663206	31	10.7	31	79	9	296	32	14	29	23	1.94
3662869--3663166	156	1.9	158	84	5	406	31	14	29	23	1.95
3671482--3671558	20	3.8	20	84	6	102	40	11	15	32	1.84
3672504--3672564	1	61.0	1	73	0	50	86	4	4	3	0.77
3672504--3672550	10	4.7	10	84	7	60	89	6	0	4	0.59
3673492--3673680	100	1.9	97	85	8	260	24	30	16	28	1.96
3673631--3674427	61	13.1	62	83	5	846	25	26	18	29	1.98
3674418--3674749	42	7.8	42	76	10	273	18	23	13	44	1.85
3674419--3674773	129	2.8	126	80	8	355	18	24	12	44	1.84
3674419--3674793	83	4.4	81	78	9	304	18	24	13	44	1.85
3674419--3674768	41	8.2	42	78	8	305	18	24	12	44	1.84
3675956--3675981	13	2.0	13	100	0	52	38	15	15	30	1.88
3679680--3679704	13	1.9	13	100	0	50	36	16	16	32	1.90
3681523--3681548	13	2.0	13	100	0	52	38	15	15	30	1.88
3684553--3684731	52	3.5	52	86	4	238	30	26	11	31	1.91
3687280--3687334	20	2.8	19	78	8	56	27	20	12	40	1.88
3689576--3689617	20	2.0	21	95	4	77	33	23	11	30	1.91
3690260--3690332	20	3.6	20	81	3	101	35	13	19	31	1.91
3690278--3690353	21	3.7	21	78	3	91	40	11	17	30	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3690260--3690353	41	2.3	41	96	0	170	38	12	18	30	1.88
3690392--3690417	13	2.0	13	100	0	52	38	15	15	30	1.88
3692459--3692492	16	2.2	16	89	5	52	64	0	8	26	1.22
3692633--3692677	21	2.1	21	84	8	56	53	4	20	22	1.63
3694481--3694511	15	2.1	15	93	0	53	48	16	22	12	1.80
3696591--3696628	13	2.9	13	96	0	67	34	18	15	31	1.92
3699057--3699129	20	3.6	20	81	3	101	35	13	19	31	1.91
3699075--3699150	21	3.7	21	78	3	91	40	11	17	30	1.85
3699057--3699150	41	2.3	41	96	0	170	38	12	18	30	1.88
3699189--3699214	13	2.0	13	100	0	52	38	15	15	30	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27