genome.fa.s18.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold18
Parameters: 2 7 7 80 10 50 1000
Length:  4432388

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  11  of  27  ( 3197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1592817--1592883	33	2.0	33	88	0	98	43	16	14	25	1.86
1592903--1592970	19	3.9	18	76	23	83	38	14	11	35	1.83
1592925--1592949	13	1.9	13	100	0	50	32	16	16	36	1.90
1592906--1592968	32	2.0	32	96	0	117	36	15	12	34	1.86
1593026--1593082	21	2.7	21	97	0	105	36	19	10	33	1.86
1593692--1594369	55	12.3	55	92	2	1007	20	20	30	28	1.98
1593958--1594102	26	5.3	26	65	15	87	20	18	32	28	1.96
1593988--1594131	29	5.2	29	65	18	108	19	19	32	28	1.96
1595335--1595394	9	6.8	9	75	7	52	0	10	5	85	0.75
1597845--1597912	19	3.9	18	76	23	83	38	14	11	35	1.83
1597867--1597891	13	1.9	13	100	0	50	32	16	16	36	1.90
1597848--1597910	32	2.0	32	96	0	117	36	15	12	34	1.86
1597968--1598015	21	2.3	21	96	0	87	37	18	10	33	1.85
1598025--1598071	1	47.0	1	93	0	67	4	2	0	93	0.40
1598023--1598069	24	2.0	24	100	0	94	8	2	0	89	0.57
1598025--1598074	26	1.9	26	100	0	100	8	4	0	88	0.64
1598317--1598462	50	2.9	51	90	4	224	43	11	19	26	1.85
1599644--1600866	28	42.3	28	76	13	595	22	18	29	29	1.97
1599605--1600861	58	21.6	56	75	11	789	22	18	29	29	1.97
1599900--1599942	21	2.0	21	90	0	68	20	20	27	30	1.98
1599632--1600854	322	3.8	319	83	6	1317	22	18	29	29	1.97
1619313--1619340	10	2.8	10	100	0	56	67	0	0	32	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1620588--1620617	6	5.0	6	91	0	51	50	0	30	20	1.49
1624952--1625029	20	3.9	20	81	0	102	43	12	14	29	1.82
1626023--1626209	28	6.6	28	82	6	189	24	16	29	29	1.97
1627495--1627558	14	4.6	14	80	5	67	3	1	9	85	0.76
1627495--1627537	17	2.6	16	85	10	59	0	2	13	83	0.74
1627505--1627566	6	10.5	6	81	18	53	3	3	9	83	0.86
1627495--1627559	29	2.3	28	79	10	78	3	1	10	84	0.80
1627495--1627565	18	4.1	17	81	16	76	2	2	9	84	0.82
1627510--1627557	25	2.0	24	87	4	69	4	2	6	87	0.73
1636575--1636647	21	3.6	21	85	12	84	31	17	17	32	1.94
1636630--1636660	13	2.4	13	94	0	53	35	16	12	35	1.87
1636613--1636680	33	2.1	32	89	10	102	36	13	17	32	1.89
1641488--1641542	20	2.8	20	85	0	74	32	10	14	41	1.81
1643470--1643691	79	2.8	79	80	5	254	31	14	26	28	1.95
1643631--1643741	51	2.2	51	88	0	159	36	11	19	32	1.88
1643681--1643876	108	1.8	107	83	3	259	33	15	23	27	1.95
1643539--1643979	238	1.9	237	79	5	514	31	14	25	28	1.95
1646350--1646444	50	1.9	50	88	0	145	36	14	17	30	1.90
1646429--1646458	13	2.3	13	94	0	51	36	13	16	33	1.88
1647045--1647147	41	2.5	40	81	7	118	41	9	29	19	1.83
1647044--1647454	45	9.6	41	72	16	153	41	12	27	19	1.87
1647146--1647446	135	2.3	132	85	2	404	40	13	26	19	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1647151--1647452	88	3.4	87	79	11	321	41	12	26	19	1.87
1647150--1647447	45	6.7	45	77	13	285	40	13	26	19	1.88
1647443--1647991	61	9.1	61	77	9	430	28	20	26	23	1.99
1647450--1647991	117	4.5	116	80	8	491	27	21	26	24	1.99
1647494--1648012	178	2.9	175	81	8	548	27	20	27	24	1.99
1647823--1647991	62	2.7	62	92	0	268	29	17	26	26	1.98
1648019--1648441	61	7.1	60	78	9	418	27	19	27	24	1.99
1648030--1648460	117	3.6	118	84	4	512	26	20	27	25	1.99
1648149--1648460	55	5.4	55	76	10	266	27	20	26	25	1.99
1648054--1648441	178	2.2	175	81	6	442	27	19	27	25	1.99
1647579--1651980	450	10.4	441	72	14	1402	27	20	27	24	1.99
1648470--1648644	61	3.0	59	81	7	207	26	20	28	25	1.99
1648480--1648670	55	3.4	55	85	4	229	23	21	28	26	1.99
1648269--1652252	210	19.2	208	67	19	1238	27	20	28	24	1.99
1648599--1648930	94	3.5	94	86	1	452	25	19	30	25	1.98
1648385--1649139	397	1.9	397	89	1	1181	26	20	28	24	1.99
1648935--1649068	55	2.5	55	87	1	189	27	22	23	26	2.00
1648961--1649046	27	3.1	27	64	15	68	30	20	23	25	1.99
1648961--1649046	28	3.1	28	64	21	72	30	20	23	25	1.99
1649087--1649203	62	1.9	62	87	1	173	27	20	26	25	1.99
1649086--1649219	62	2.3	58	81	10	157	26	21	24	26	1.99
1648927--1649348	156	2.8	153	83	5	514	29	20	26	23	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1649232--1649654	61	7.1	61	79	10	428	27	20	28	24	1.99
1649301--1649671	117	3.2	116	84	3	471	26	21	27	25	1.99
1649273--1649654	178	2.1	175	82	6	448	26	20	27	24	1.99
1649696--1649875	55	3.2	58	82	10	194	24	20	30	25	1.99
1649804--1650044	94	2.6	94	86	2	333	23	20	30	25	1.99
1649992--1650130	61	2.4	55	76	8	145	27	23	25	24	2.00
1649537--1649821	148	1.9	153	78	9	230	26	20	28	25	1.99
1649894--1650436	155	3.5	154	81	4	578	27	20	27	24	1.99
1650302--1650491	55	3.3	55	80	9	227	25	21	25	27	1.99
1649989--1650649	366	1.8	364	86	3	950	27	20	27	24	1.99
1650568--1650704	55	2.5	55	87	1	186	25	21	27	25	2.00
1649895--1650775	366	2.4	364	73	7	900	27	19	28	24	1.99
1649471--1650950	825	1.8	818	91	1	2460	27	19	28	24	1.99
1650629--1651267	94	6.6	94	76	10	507	27	19	28	24	1.99
1650820--1651005	55	3.3	56	87	7	218	27	20	23	27	1.99
1650841--1651005	55	2.9	55	90	5	231	27	21	23	27	1.99
1650898--1650983	27	3.1	27	67	15	77	30	20	20	27	1.98
1650898--1650983	28	3.1	28	66	20	72	30	20	20	27	1.98
1650404--1651167	304	2.5	303	82	3	996	27	19	28	24	1.99
1650621--1651348	398	1.8	398	90	0	1170	27	20	27	24	1.99
1651108--1651508	155	2.6	155	85	1	543	28	20	27	23	1.99
1651370--1651556	55	3.3	55	86	6	225	28	22	24	25	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1651220--1652253	209	4.9	211	82	6	1116	27	20	27	24	1.99
1651572--1651767	55	3.5	55	79	9	205	26	21	26	25	2.00
1651631--1651922	155	1.9	155	84	2	399	27	20	27	25	1.99
1651776--1651902	61	2.1	61	88	2	184	29	18	29	22	1.97
1651241--1652246	419	2.4	419	83	4	1226	28	20	27	23	1.99
1651855--1651977	55	2.2	55	86	0	165	21	21	26	29	1.99
1652053--1652183	54	2.4	54	80	1	154	22	19	28	29	1.98
1652109--1652353	94	2.6	94	89	0	355	25	18	30	24	1.98
1652288--1652413	61	2.1	61	86	0	171	31	20	24	23	1.98
1651837--1652128	154	1.9	155	78	9	255	26	19	28	25	1.99
1652046--1652498	249	1.8	242	81	6	561	26	19	29	24	1.99
1652537--1652622	27	3.1	27	63	3	73	29	20	23	26	1.99
1652456--1652644	55	3.3	55	87	4	234	25	20	25	28	1.99
1652292--1654635	210	11.0	210	72	14	1304	27	19	27	24	1.99
1652537--1652622	28	3.1	28	62	8	68	29	20	23	26	1.99
1652566--1652738	94	1.8	94	88	0	265	25	21	28	23	1.99
1652655--1652834	55	3.1	58	76	11	190	27	21	27	23	1.99
1652660--1652856	55	3.5	55	77	10	189	25	21	26	25	2.00
1652864--1653030	61	2.8	59	81	8	173	28	19	27	25	1.98
1652932--1653065	55	2.4	55	86	0	187	23	22	25	28	1.99
1652290--1653334	421	2.5	420	82	5	1274	27	20	27	24	1.99
1653154--1653271	54	2.2	55	82	1	148	22	19	28	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1653197--1653441	94	2.6	94	90	0	364	25	19	30	24	1.98
1653376--1653500	60	2.1	61	84	1	162	32	20	24	23	1.98
1652925--1653216	154	1.9	155	79	9	246	27	19	27	25	1.99
1653624--1653709	27	3.1	27	63	3	73	29	20	23	26	1.99
1653543--1653731	55	3.3	55	86	4	243	26	20	24	28	1.99
1653624--1653709	28	3.1	28	62	8	68	29	20	23	26	1.99
1653653--1653825	94	1.8	94	87	0	256	26	21	28	23	1.99
1653747--1653922	55	3.0	59	80	7	191	26	21	28	24	1.99
1653747--1653943	55	3.5	55	77	10	189	25	21	26	25	1.99
1653951--1654132	61	3.1	60	78	11	180	28	18	28	25	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27