genome.fa.s18.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold18
Parameters: 2 7 7 80 10 50 1000
Length:  4432388

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  27  of  27  ( 3197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4352359--4352485	53	2.5	51	83	12	154	29	13	27	29	1.94
4352457--4352739	143	2.0	141	96	1	521	28	18	31	21	1.97
4353857--4354057	27	7.2	27	83	11	253	16	30	6	45	1.74
4353882--4353948	35	1.9	35	96	0	125	17	34	5	41	1.74
4353849--4354029	62	3.1	62	82	12	229	17	32	6	44	1.73
4353857--4354057	81	2.4	85	87	9	279	16	30	6	45	1.74
4356507--4356542	2	18.0	2	94	0	63	47	0	2	50	1.15
4358931--4358976	25	2.0	22	83	12	56	41	8	6	43	1.61
4361048--4361080	14	2.5	13	95	5	57	51	3	0	45	1.16
4361047--4361105	21	2.8	21	82	5	57	44	1	0	54	1.10
4365887--4365927	2	20.5	2	94	0	73	51	0	0	48	1.00
4366972--4367038	34	2.0	34	82	5	82	43	1	1	53	1.19
4367034--4367098	19	3.4	19	70	16	53	53	0	0	46	1.00
4367032--4367119	38	2.2	40	86	7	119	53	0	0	46	1.00
4368765--4368880	22	5.0	23	72	8	65	44	0	0	53	1.12
4368766--4368879	60	1.9	59	81	12	135	43	0	0	54	1.12
4371466--4371501	18	1.9	18	88	5	54	25	2	2	69	1.15
4371770--4371804	18	2.0	18	88	5	54	51	0	2	45	1.16
4373183--4373224	18	2.5	17	76	7	50	59	0	2	38	1.10
4373277--4373351	26	3.1	24	75	17	75	41	1	2	54	1.23
4373779--4373823	23	2.0	23	82	8	56	42	8	4	44	1.56
4373855--4373987	67	2.0	68	82	10	166	43	12	3	40	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4374465--4374665	87	2.3	87	82	6	235	37	4	10	46	1.61
4374621--4374659	19	2.0	20	90	5	62	35	5	7	51	1.53
4374870--4374917	20	2.4	20	75	6	53	39	0	12	47	1.41
4376681--4376777	32	3.2	31	75	16	87	42	0	1	56	1.06
4376701--4376778	15	5.2	15	73	11	63	41	0	1	57	1.07
4376722--4376778	23	2.5	22	78	13	62	43	0	1	54	1.10
4376798--4376841	22	2.0	22	86	4	63	38	4	11	45	1.61
4382972--4383059	46	1.9	46	88	0	131	38	21	12	27	1.89
4384372--4384431	30	2.0	30	100	0	120	33	10	13	43	1.77
4385958--4386128	38	4.5	38	81	5	170	30	12	19	37	1.89
4389385--4389430	22	2.1	22	84	11	60	52	4	0	43	1.21
4390819--4390851	17	1.9	17	93	0	57	51	21	12	15	1.75
4391771--4391824	19	2.8	20	88	8	76	29	11	12	46	1.77
4400231--4400407	34	5.4	32	76	14	130	23	29	12	33	1.92
4400230--4400407	33	5.4	32	77	15	134	24	29	12	33	1.93
4400297--4400355	30	2.0	30	93	0	100	22	32	16	28	1.96
4400254--4400808	32	17.0	34	71	14	239	22	30	11	35	1.90
4400329--4400809	32	14.8	32	74	9	348	22	30	11	34	1.90
4400492--4400547	27	2.1	27	96	0	103	21	33	14	30	1.93
4400264--4400809	67	8.4	66	75	13	330	22	30	11	34	1.90
4400299--4400614	99	3.3	92	80	8	337	22	30	12	34	1.91
4400555--4400809	98	2.6	99	83	4	302	23	30	10	35	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4400953--4401170	32	6.8	32	80	8	221	30	32	16	20	1.95
4401169--4401444	49	5.9	49	83	6	281	25	26	17	30	1.97
4401219--4401385	86	1.9	89	83	7	223	25	26	18	29	1.98
4401502--4401535	18	1.9	17	88	5	50	17	29	0	52	1.45
4403994--4404046	27	2.0	27	88	0	79	24	30	16	28	1.97
4408341--4408422	28	2.9	28	80	7	96	26	17	31	24	1.97
4408405--4408575	51	3.3	50	78	6	180	33	11	25	29	1.91
4408560--4408633	27	2.7	28	87	6	98	21	20	33	24	1.97
4411098--4411123	13	2.0	13	100	0	52	38	15	15	30	1.88
4411077--4411143	33	2.0	33	88	0	98	43	16	14	25	1.86
4411163--4411230	19	3.9	18	76	23	83	38	14	11	35	1.83
4411185--4411209	13	1.9	13	100	0	50	32	16	16	36	1.90
4411166--4411228	32	2.0	32	96	0	117	36	15	12	34	1.86
4411286--4411342	21	2.7	21	97	0	105	36	19	10	33	1.86
4411960--4412593	55	11.4	55	86	6	834	22	20	29	27	1.98
4411985--4412595	276	2.2	277	90	3	942	21	20	29	27	1.98
4412483--4412571	29	3.2	29	60	15	69	21	19	31	28	1.97
4413572--4413633	13	4.5	14	89	4	83	0	6	8	85	0.74
4417320--4417375	20	2.8	20	83	0	67	37	14	14	33	1.86
4417449--4417473	13	1.9	13	100	0	50	32	16	16	36	1.90
4417429--4417496	33	2.1	33	91	2	111	36	17	13	32	1.89
4419084--4419117	3	11.3	3	87	0	50	38	0	35	26	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4423666--4423704	13	3.0	13	96	0	69	30	17	15	35	1.91
4423836--4423876	22	2.0	20	86	13	57	31	21	4	41	1.74
4425502--4425616	31	3.5	31	71	17	115	37	2	33	26	1.71
4425493--4425654	68	2.4	68	94	4	283	38	3	28	29	1.72
4426184--4426239	20	2.8	20	83	0	67	35	12	16	35	1.86
4426313--4426337	13	1.9	13	100	0	50	32	16	16	36	1.90
4426296--4426360	33	2.0	32	90	3	103	38	18	12	30	1.88
4428929--4428985	30	1.9	30	88	0	87	35	24	17	22	1.95
4429170--4429249	41	1.9	42	84	2	108	33	11	21	33	1.89
4431502--4431654	49	3.1	49	62	20	111	30	7	24	36	1.84
4431442--4431929	98	5.0	98	95	0	872	27	9	22	39	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27

The End!