genome.fa.s18.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold18
Parameters: 2 7 7 80 10 50 1000
Length:  4432388

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   

This is table  3  of  27  ( 3197 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273708--273740	17	2.0	17	88	5	50	30	9	9	51	1.64
279170--279243	20	3.8	19	87	8	96	29	14	17	37	1.90
279271--279324	20	2.7	20	88	5	74	27	12	22	37	1.91
287525--287549	13	1.9	13	100	0	50	36	16	16	32	1.90
287503--287568	33	2.0	32	88	8	98	31	13	16	37	1.88
287617--287670	20	2.7	20	88	5	74	33	12	16	37	1.87
290300--290416	33	3.8	29	75	15	110	7	16	11	64	1.49
296502--296553	20	2.6	20	84	0	59	34	13	13	38	1.84
297650--297777	32	3.9	34	75	14	126	25	25	18	31	1.98
297878--298228	52	6.7	52	73	13	175	25	23	17	32	1.97
297929--298133	111	1.8	111	82	4	261	25	23	17	33	1.96
297878--298179	163	1.9	163	80	2	365	25	24	18	32	1.97
298875--299009	52	2.6	50	78	6	137	31	14	11	42	1.81
301367--301430	27	2.4	27	89	0	92	25	26	14	34	1.94
305168--305193	13	2.0	13	100	0	52	38	15	15	30	1.88
305150--305213	33	2.0	33	90	3	103	42	17	14	26	1.87
311272--311349	20	3.6	21	74	15	70	29	15	15	39	1.88
313829--313854	13	2.0	13	100	0	52	38	15	15	30	1.88
313811--313874	33	2.0	33	90	3	103	42	17	14	26	1.87
321213--321279	32	2.1	32	100	0	134	29	17	14	37	1.91
323636--323709	20	3.8	19	87	8	96	29	14	17	37	1.90
323737--323790	20	2.7	20	88	5	74	27	12	22	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331909--331933	13	1.9	13	100	0	50	36	16	16	32	1.90
331888--331952	32	2.0	32	91	5	105	32	13	16	36	1.89
332001--332054	20	2.7	20	88	5	74	33	12	16	37	1.87
334715--334831	33	3.8	29	75	15	110	7	16	11	64	1.49
336905--336967	25	2.3	28	73	18	69	74	6	11	7	1.21
340921--340972	20	2.6	20	84	0	59	34	13	13	38	1.84
342069--342260	31	5.9	34	71	11	136	26	25	18	30	1.98
342069--342180	33	3.5	32	79	8	120	26	23	16	33	1.96
342361--342711	52	6.7	52	74	11	182	25	23	17	32	1.96
342412--342616	111	1.8	111	83	4	270	25	23	17	33	1.96
342361--342662	163	1.9	163	80	2	365	25	24	17	32	1.97
343358--343492	52	2.6	50	78	6	137	31	14	11	42	1.81
345851--345914	27	2.4	27	89	0	92	25	26	14	34	1.94
349656--349681	13	2.0	13	100	0	52	38	15	15	30	1.88
349638--349701	33	2.0	33	90	3	103	42	17	14	26	1.87
358222--358276	20	2.8	19	86	10	67	41	14	12	30	1.83
358347--358372	13	2.0	13	100	0	52	38	15	15	30	1.88
358329--358392	33	2.0	33	90	3	103	42	17	14	26	1.87
365746--365812	32	2.1	32	100	0	134	29	17	14	37	1.91
372999--373054	7	7.4	8	78	15	57	30	0	0	69	0.89
372999--373055	15	3.8	15	83	6	80	31	0	0	68	0.90
373000--373055	21	2.6	21	86	11	69	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372995--373053	29	2.0	30	96	3	111	33	0	0	66	0.92
372995--373055	8	8.1	8	73	26	62	34	0	0	65	0.93
373074--373122	18	2.6	19	81	15	57	55	0	4	40	1.19
374710--375024	152	2.1	152	86	6	437	33	17	20	27	1.95
376106--376167	19	3.2	19	71	13	54	40	16	14	29	1.88
376136--376198	32	2.0	32	96	0	117	34	12	17	34	1.88
376136--376217	19	4.6	19	78	17	104	34	12	17	36	1.87
376271--376295	13	1.9	13	100	0	50	36	16	8	40	1.77
380424--380448	13	1.9	13	100	0	50	36	16	16	32	1.90
380489--380555	33	2.0	33	88	0	98	38	13	13	34	1.84
380511--380535	13	1.9	13	100	0	50	32	16	16	36	1.90
382217--382356	51	2.7	51	86	2	174	27	26	12	33	1.92
382217--382385	51	3.3	51	84	3	171	28	26	12	33	1.92
382325--382699	79	4.8	80	78	9	344	28	25	12	34	1.92
382322--382698	158	2.4	155	81	3	459	28	24	13	33	1.93
384545--384571	13	2.1	13	100	0	54	40	14	14	29	1.86
385694--385740	18	2.6	18	80	6	51	17	4	2	76	1.04
386170--386619	109	4.1	110	76	8	454	31	16	15	36	1.90
386188--386695	109	4.7	107	79	4	448	31	16	14	36	1.90
386189--386589	215	1.9	217	82	3	522	31	15	15	36	1.90
386565--386776	109	1.9	109	82	1	264	33	17	13	34	1.89
387044--387081	19	2.0	19	90	10	60	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387029--387083	25	2.2	26	80	9	60	49	1	0	49	1.11
387690--387746	20	2.8	20	83	0	78	31	10	14	43	1.79
387710--387843	52	2.6	52	92	3	218	29	14	15	40	1.87
401721--401777	1	57.0	1	75	0	51	87	8	1	1	0.68
401724--401856	6	21.8	6	71	19	73	81	13	3	2	0.91
401721--401858	12	11.7	11	71	20	93	81	13	2	2	0.89
401736--401857	15	8.3	15	71	18	87	81	13	2	2	0.90
401721--401858	26	5.2	26	71	17	106	81	13	2	2	0.89
401721--401858	27	5.2	26	73	17	124	81	13	2	2	0.89
403107--403581	28	16.5	28	79	6	448	29	30	16	23	1.96
410883--410947	33	2.0	33	84	6	87	33	15	12	38	1.85
411020--411046	13	2.1	13	100	0	54	37	14	25	22	1.93
413914--414430	79	6.5	78	79	7	488	33	12	25	28	1.92
413914--414430	158	3.3	158	84	3	603	33	12	25	28	1.92
413951--414417	237	2.0	237	85	2	643	33	11	25	29	1.91
416767--416859	30	3.4	30	68	27	98	41	15	16	26	1.87
416768--416881	50	2.3	50	95	0	201	43	14	14	27	1.84
417264--417304	3	13.7	3	94	0	64	26	0	4	68	1.10
417494--417624	42	3.1	42	77	18	137	42	14	24	18	1.87
417553--417653	41	2.4	42	83	1	114	35	16	27	19	1.94
417710--417840	61	2.1	62	82	8	153	30	16	25	27	1.96
418784--418838	7	7.6	7	76	15	58	1	12	5	80	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425043--425109	33	2.0	33	88	0	98	34	11	13	40	1.81
425063--425087	13	1.9	13	100	0	50	36	16	16	32	1.90
425150--425174	13	1.9	13	100	0	50	32	16	16	36	1.90
425183--425306	52	2.4	52	93	4	207	34	18	17	29	1.94
432719--432749	4	7.8	4	92	0	53	74	0	3	22	0.96
434707--434907	78	2.6	78	82	3	215	31	15	26	25	1.96
434783--434982	107	1.9	106	81	4	240	32	13	27	27	1.94
434918--435575	51	12.6	51	69	9	367	31	12	26	29	1.92
434808--435564	262	2.9	262	95	0	1345	31	12	27	28	1.93
437981--438042	19	3.7	18	72	28	64	37	17	12	32	1.88
437973--438042	31	2.2	32	92	2	115	37	18	12	31	1.89
439377--439547	79	2.2	79	81	4	193	38	12	23	25	1.91
439498--439617	51	2.4	51	88	0	177	28	13	28	30	1.94
439428--439693	130	2.0	130	84	1	345	33	12	25	28	1.93
439551--440969	79	18.0	78	78	8	1062	32	14	25	28	1.94
440236--440492	130	2.0	130	93	3	446	32	14	24	28	1.94
440157--440562	209	1.9	209	88	2	609	32	14	25	27	1.94
440519--440592	28	2.6	28	91	0	112	27	22	28	21	1.99
440440--440671	107	2.2	107	89	0	356	30	16	27	25	1.97
440366--440750	186	2.1	186	87	1	538	32	15	25	26	1.95
443362--443416	20	2.8	20	86	5	76	49	16	12	21	1.79
444271--444310	13	3.1	13	85	0	62	37	17	12	32	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453472--453641	81	2.1	82	79	6	195	40	17	18	24	1.91
457855--458558	354	2.0	352	90	2	1099	35	12	11	39	1.80
460677--460726	20	2.4	21	93	3	84	40	14	18	28	1.89
460764--460882	50	2.4	50	88	2	168	30	12	11	45	1.78
460837--460914	32	2.5	31	89	4	122	28	17	14	39	1.89
467264--467302	21	1.9	20	94	5	69	35	12	15	35	1.86
468572--468870	158	1.9	158	84	5	408	39	10	21	28	1.86
468835--468900	28	2.4	28	82	5	80	33	21	21	24	1.97
468572--468872	79	3.8	79	82	4	340	39	10	21	28	1.87
470151--470187	4	9.8	4	94	5	60	75	0	24	0	0.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27