genome.fa.s206.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold206
Parameters: 2 7 7 80 10 50 1000
Length:  2736418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  1  of  20  ( 2337 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9--2849	22	130.3	23	73	18	609	41	40	13	4	1.65
8--3035	36	83.8	37	74	18	761	41	40	12	4	1.65
8--3267	7	451.7	7	75	16	2251	41	40	11	5	1.65
66--3242	68	46.7	67	72	19	863	41	40	11	5	1.65
1159--1299	39	3.7	39	79	15	115	43	38	15	2	1.62
2357--3480	21	52.3	21	74	12	540	42	41	6	8	1.62
3242--3275	14	2.4	14	90	0	50	32	50	14	2	1.58
3279--3480	7	28.1	7	70	14	94	43	37	3	15	1.64
3362--3430	13	5.2	13	71	11	59	39	44	5	10	1.62
3406--3478	16	4.8	16	73	6	62	42	39	2	15	1.61
3516--3573	14	4.1	14	77	0	53	46	36	8	8	1.65
3515--3573	21	2.8	21	73	0	55	47	35	8	8	1.64
3585--3627	20	2.2	20	87	4	61	32	39	0	27	1.57
3588--3638	27	1.9	26	84	4	66	33	47	0	19	1.50
3626--3758	7	19.1	7	72	1	70	35	49	7	7	1.59
3626--3758	14	9.6	14	72	1	79	35	49	7	7	1.59
3650--3700	20	2.5	20	93	3	84	29	52	11	5	1.61
3691--3758	21	3.2	21	82	0	82	35	48	5	10	1.61
3845--3870	7	3.7	7	100	0	52	46	42	0	11	1.40
4505--4594	19	4.7	19	72	15	78	43	5	1	50	1.33
4517--4555	17	2.3	17	90	0	60	51	2	0	46	1.14
21404--21466	21	2.8	22	83	11	67	42	0	0	57	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
21800--21849	24	2.1	24	96	0	91	40	12	20	28	1.87
26577--26610	17	1.9	17	88	5	50	35	0	0	64	0.94
33788--33863	26	2.9	26	88	0	116	35	9	13	42	1.76
40047--40077	2	15.5	2	100	0	62	48	0	0	51	1.00
40849--40893	20	2.2	20	80	0	54	46	13	2	37	1.55
41285--41326	3	14.0	3	100	0	84	66	0	0	33	0.92
42367--42409	2	21.5	2	100	0	86	48	0	0	51	1.00
43076--43179	16	6.6	16	73	8	70	15	17	25	42	1.88
43074--43179	32	3.4	31	74	11	99	15	16	24	43	1.87
44612--44653	16	2.6	16	88	0	57	30	21	2	45	1.65
44675--44705	16	1.9	16	100	0	62	48	6	0	45	1.28
47944--47988	16	2.6	17	82	6	56	13	8	2	75	1.13
47935--47987	18	2.9	18	82	17	58	11	9	1	77	1.07
47946--47988	17	2.6	16	78	10	50	13	6	2	76	1.08
48591--48625	6	5.8	6	86	0	52	34	20	31	14	1.92
48833--48882	2	27.0	2	78	15	54	42	0	0	58	0.98
53194--53240	3	15.7	3	95	0	85	31	2	0	65	1.04
55036--55069	2	17.0	2	100	0	68	50	0	0	50	1.00
56577--56656	40	2.0	40	95	0	142	28	8	21	41	1.83
56893--56920	2	14.0	2	100	0	56	50	0	0	50	1.00
63064--63091	2	14.0	2	100	0	56	50	0	0	50	1.00
70814--70847	5	6.8	5	96	0	50	41	11	5	41	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
70993--71035	3	14.3	3	100	0	86	67	0	32	0	0.91
71034--71066	3	11.0	3	100	0	66	33	0	33	33	1.58
76716--76839	52	2.4	52	95	0	221	27	17	18	36	1.94
76716--76860	52	2.8	51	87	6	195	28	17	19	34	1.94
76849--76873	13	1.9	13	100	0	50	36	16	16	32	1.90
76940--76964	13	1.9	13	100	0	50	32	16	16	36	1.90
79395--79506	49	2.3	49	90	3	174	37	5	1	55	1.33
79929--79957	15	1.9	15	100	0	58	55	0	3	41	1.17
79958--80004	19	2.5	19	75	3	51	44	8	0	46	1.33
80041--80082	3	14.0	3	100	0	84	66	0	0	33	0.92
80288--80315	13	2.2	13	100	0	56	46	0	7	46	1.30
80703--80737	2	17.5	2	100	0	70	51	0	48	0	1.00
80848--80877	3	10.0	3	100	0	60	66	0	33	0	0.92
81050--81077	2	14.0	2	100	0	56	50	50	0	0	1.00
88435--88477	2	21.5	2	100	0	86	48	0	0	51	1.00
89471--89512	2	21.0	2	100	0	84	50	0	0	50	1.00
93911--93940	2	15.0	2	100	0	60	50	0	0	50	1.00
105241--105366	27	4.9	27	69	13	70	42	1	2	53	1.23
111773--111806	17	1.9	17	94	5	59	67	0	0	32	0.91
116894--116945	17	3.2	17	82	15	58	65	0	0	34	0.93
116729--117210	248	1.9	258	87	8	727	42	9	8	39	1.68
117173--117206	17	1.9	18	88	5	52	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
118434--118458	4	6.2	4	100	0	50	76	0	0	24	0.80
119086--119117	2	16.0	2	100	0	64	50	0	0	50	1.00
125146--125176	12	2.6	12	89	0	53	38	0	9	51	1.35
125976--126000	2	12.5	2	100	0	50	52	0	0	48	1.00
126173--126213	22	1.9	21	85	5	55	43	0	0	56	0.99
131190--131267	31	2.5	31	85	4	104	35	3	17	42	1.68
134882--134950	2	34.5	2	88	0	102	47	2	2	46	1.32
136422--136458	2	18.5	2	94	0	65	51	2	0	45	1.15
140021--140051	2	15.5	2	100	0	62	0	0	48	51	1.00
140581--140615	2	17.5	2	87	0	52	45	0	2	51	1.16
141297--141352	27	2.1	27	83	3	69	26	7	19	46	1.76
144442--144551	42	2.6	42	91	0	184	40	2	46	10	1.53
152576--152649	27	2.7	27	82	4	85	25	9	18	45	1.80
153993--154020	7	4.0	7	100	0	56	14	28	42	14	1.84
153979--154020	21	2.0	21	81	9	50	16	23	42	16	1.88
158863--158894	2	16.0	2	100	0	64	0	50	0	50	1.00
159475--159519	2	23.0	2	90	4	74	48	2	0	48	1.13
165715--165764	19	2.7	19	70	14	50	52	4	0	44	1.20
168257--168362	6	17.8	6	75	14	69	34	1	1	61	1.18
168297--168362	17	3.7	18	82	11	75	31	0	1	66	1.01
168296--168354	22	2.6	23	86	10	86	30	0	1	67	1.00
170734--170775	2	21.0	2	100	0	84	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170775--170809	2	17.5	2	100	0	70	51	0	48	0	1.00
175685--175729	2	22.5	2	90	0	72	51	46	2	0	1.13
176248--176278	2	15.5	2	100	0	62	48	0	0	51	1.00
177481--177520	2	20.0	2	94	0	71	0	47	0	52	1.00
177481--177528	8	5.8	8	83	9	51	2	45	0	52	1.12
180259--180288	12	2.4	12	94	5	51	20	20	20	40	1.92
180980--181022	3	14.3	3	80	0	50	23	0	44	32	1.54
180982--181023	6	7.0	6	97	0	66	21	0	45	33	1.52
181762--181791	15	2.0	15	93	0	51	53	3	0	43	1.17
184289--184322	2	17.0	2	100	0	68	50	0	0	50	1.00
185067--185127	2	31.0	2	86	3	88	50	4	0	44	1.23
185776--185863	7	12.0	7	75	13	79	46	0	1	52	1.08
185769--185815	21	2.2	21	80	0	58	55	0	0	44	0.99
185776--185863	15	6.0	14	75	15	79	46	0	1	52	1.08
185803--185856	23	2.4	22	75	9	56	50	0	0	50	1.00
189495--189542	21	2.2	21	92	3	78	54	0	0	45	0.99
190311--190369	26	2.3	26	82	11	68	38	3	0	57	1.15
191746--191779	16	2.1	16	88	5	50	41	0	0	58	0.98
191776--191816	14	3.0	13	82	10	55	43	0	0	56	0.99
192002--192043	2	21.0	2	95	0	66	0	54	0	45	0.99
192153--192178	2	13.0	2	100	0	52	0	50	0	50	1.00
192322--192360	2	19.5	2	100	0	78	0	48	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197105--197130	2	13.0	2	100	0	52	50	0	0	50	1.00
205541--205570	15	2.0	15	93	0	51	63	10	6	20	1.47
210174--210233	28	2.1	30	79	17	74	36	0	0	63	0.95
213872--213928	28	2.0	28	100	0	114	38	10	17	33	1.84
220285--220346	19	3.3	18	78	13	63	41	0	0	58	0.98
220315--220390	25	3.0	24	81	11	89	40	0	0	59	0.98
220317--220375	29	2.1	27	84	6	73	44	0	0	55	0.99
225683--225708	7	3.7	7	100	0	52	11	0	0	88	0.52
225675--225709	14	2.5	13	86	13	52	8	2	0	88	0.61
226149--226190	21	2.0	20	90	4	66	40	0	2	57	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20