genome.fa.s206.2.7.7.80.10.50.1000.9.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold206
Parameters: 2 7 7 80 10 50 1000
Length:  2736418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  9  of  20  ( 2337 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1148098--1148250	75	2.0	75	89	0	234	53	1	3	41	1.28
1148757--1148803	22	2.1	23	84	11	62	48	2	0	48	1.13
1149230--1149263	17	2.0	17	88	0	50	41	0	17	41	1.50
1152893--1152931	11	3.4	11	83	13	51	56	0	5	38	1.22
1155630--1155830	104	1.9	105	87	3	298	28	14	18	38	1.90
1157946--1158061	58	2.0	58	98	0	223	43	24	14	17	1.86
1175520--1175567	13	3.8	12	75	8	51	56	2	0	41	1.11
1177243--1177276	6	5.3	6	86	13	50	35	0	2	61	1.11
1177242--1177276	13	2.7	13	95	0	61	37	0	2	60	1.12
1181659--1181689	13	2.4	13	94	0	53	48	0	9	41	1.36
1181964--1181996	13	2.6	13	90	4	50	57	0	3	39	1.14
1182147--1182214	13	5.1	13	71	16	50	63	2	1	32	1.18
1182161--1182293	31	3.8	36	72	21	88	57	2	0	39	1.11
1182213--1182308	38	2.3	46	81	15	118	56	1	0	42	1.06
1182191--1182293	18	5.8	18	71	17	65	57	0	0	41	1.05
1182241--1182314	12	4.9	15	70	23	57	54	0	0	45	1.00
1182174--1182314	58	2.4	59	79	12	139	57	0	0	41	1.04
1182415--1182486	16	4.8	16	74	19	64	37	1	8	52	1.40
1182411--1182496	20	4.1	20	78	11	100	38	1	8	52	1.39
1182423--1182501	10	8.5	10	73	25	59	39	1	8	50	1.42
1182587--1182643	20	2.9	19	82	14	64	45	0	0	54	0.99
1182667--1182730	18	3.8	17	72	19	62	35	1	0	62	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1182948--1182989	11	3.8	11	78	9	50	54	0	0	45	0.99
1182948--1182992	19	2.4	19	82	13	58	55	0	0	44	0.99
1183195--1183243	25	1.9	26	83	4	64	51	2	6	40	1.38
1183531--1183568	20	1.9	20	100	0	76	50	0	0	50	1.00
1183903--1183946	14	3.2	13	78	9	52	43	0	0	56	0.99
1183908--1183958	27	1.9	26	88	11	77	39	0	1	58	1.09
1184176--1184245	17	4.1	17	75	8	63	34	0	1	64	1.03
1184210--1184280	27	2.6	28	77	20	78	45	0	0	54	0.99
1184228--1184281	17	2.8	21	73	23	55	46	0	0	53	1.00
1187569--1187598	13	2.4	13	94	5	53	23	0	0	76	0.78
1187605--1187644	20	2.0	20	90	5	62	47	2	0	50	1.14
1188178--1188288	34	3.2	34	70	20	113	29	6	7	56	1.51
1188175--1188312	69	2.0	69	98	0	267	31	7	7	54	1.55
1188208--1188319	34	3.2	36	67	21	110	30	8	8	52	1.61
1189381--1189421	20	2.0	20	95	0	73	26	24	19	29	1.98
1191557--1191593	2	19.0	2	94	5	67	48	0	51	0	1.00
1192371--1192413	18	2.4	19	85	11	56	32	0	0	67	0.91
1193190--1193487	153	1.9	154	91	2	481	41	8	15	35	1.77
1193724--1193820	31	3.2	30	79	12	99	58	3	1	37	1.20
1193711--1193827	32	3.7	31	78	10	98	56	2	1	39	1.23
1193745--1193829	32	2.7	33	83	5	104	56	2	1	40	1.20
1195555--1195627	32	2.2	32	85	2	92	50	4	2	42	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1196601--1197102	167	3.0	165	75	9	469	33	20	17	27	1.96
1201428--1201471	17	2.8	16	82	6	54	50	0	0	50	1.00
1203442--1203482	14	2.7	15	88	7	57	63	2	0	34	1.08
1203470--1203515	12	4.1	12	78	13	53	65	0	0	34	0.93
1204759--1204806	15	2.9	18	70	23	59	43	4	0	52	1.20
1205035--1205136	52	1.9	55	83	15	135	57	1	0	40	1.10
1205076--1205132	20	2.8	20	70	15	55	59	1	0	38	1.08
1206251--1206288	18	2.1	19	90	5	60	31	0	0	68	0.90
1207145--1207200	28	2.0	27	86	3	76	69	0	1	28	0.98
1207215--1207272	18	3.4	17	68	22	50	58	0	0	41	0.98
1207189--1207271	32	2.6	34	86	11	129	57	0	0	42	0.98
1207180--1207270	40	2.4	36	81	15	103	60	0	0	39	0.97
1207779--1207855	18	4.0	19	70	12	50	49	3	1	45	1.28
1208866--1208908	16	2.6	16	85	3	50	30	2	0	67	1.03
1209534--1209588	20	2.7	21	74	5	58	58	0	0	41	0.98
1210148--1210268	9	12.3	10	72	21	80	52	0	0	46	1.06
1210153--1210267	19	5.8	19	75	19	85	53	0	0	46	1.06
1210151--1210265	38	3.0	38	76	13	119	52	0	0	46	1.06
1210140--1210265	20	6.3	20	74	10	62	51	0	0	47	1.06
1210241--1210307	25	2.8	26	75	8	63	55	0	0	44	0.99
1210399--1210446	22	2.1	24	84	7	64	31	0	0	68	0.90
1210399--1210462	17	3.9	17	79	18	66	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1210411--1210458	22	2.1	23	84	3	62	29	0	0	70	0.87
1210783--1210844	18	3.3	19	82	13	74	54	0	1	43	1.09
1211458--1211500	3	14.3	3	100	0	86	67	0	0	32	0.91
1211820--1211848	2	14.5	2	100	0	58	48	0	0	51	1.00
1212248--1212295	23	2.1	23	88	7	71	52	0	2	45	1.12
1213893--1213966	38	2.0	37	86	2	103	47	1	2	48	1.24
1214419--1214451	16	1.9	18	88	11	52	30	15	12	42	1.83
1215662--1215705	19	2.3	19	80	7	54	50	2	4	43	1.35
1218512--1218577	15	4.3	16	78	14	68	40	1	0	57	1.08
1218536--1218568	13	2.6	13	90	4	50	39	3	0	57	1.14
1218623--1218665	14	3.0	14	82	3	59	51	0	0	48	1.00
1218876--1218912	16	2.4	16	91	8	60	45	0	0	54	1.00
1218876--1218944	19	3.7	19	84	7	90	44	1	0	53	1.09
1218878--1218951	16	4.1	18	74	16	55	43	1	1	54	1.17
1219445--1219476	2	16.0	2	93	0	55	53	0	0	46	1.00
1220627--1220669	18	2.3	18	84	11	52	55	0	0	44	0.99
1220638--1220696	31	1.9	31	86	6	84	55	0	0	44	0.99
1221034--1221117	42	1.9	42	90	7	132	54	1	4	39	1.29
1221485--1221528	20	2.2	20	84	8	54	34	2	0	63	1.07
1221577--1221618	19	2.4	17	84	11	57	23	4	4	66	1.30
1222726--1222774	20	2.4	21	80	6	66	44	0	16	38	1.48
1223260--1223309	21	2.5	20	80	6	55	44	4	14	38	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1223705--1223751	20	2.3	20	86	10	69	36	0	0	63	0.94
1224119--1224165	12	4.0	12	78	10	53	68	0	2	29	1.02
1224120--1224154	17	2.1	16	94	5	61	68	0	0	31	0.90
1224123--1224165	17	2.4	18	85	11	54	67	0	2	30	1.03
1224202--1224253	29	1.9	27	85	14	72	57	3	1	36	1.28
1227596--1227624	2	14.5	2	100	0	58	0	48	0	51	1.00
1228791--1228823	8	4.2	8	92	3	50	33	0	0	66	0.92
1229816--1229845	15	1.9	16	93	6	53	33	0	13	53	1.40
1229665--1229998	181	1.8	181	88	5	512	26	6	17	49	1.72
1230898--1231038	75	1.9	75	80	2	167	50	7	3	39	1.47
1231484--1231522	12	3.2	12	85	0	51	61	0	0	38	0.96
1233144--1233303	79	2.0	79	100	0	320	38	13	10	38	1.79
1233762--1233801	11	3.6	12	87	12	59	65	0	0	35	0.93
1235249--1235298	24	2.1	24	88	0	73	12	30	20	38	1.88
1239708--1239741	2	17.0	2	87	0	50	50	5	0	44	1.26
1239859--1239917	17	3.5	17	72	9	50	45	0	0	54	0.99
1239854--1239918	30	2.1	31	85	2	87	46	0	0	53	1.00
1242314--1242362	3	16.7	3	82	4	64	2	4	67	26	1.19
1242311--1242358	18	2.7	18	90	3	71	2	6	66	25	1.26
1242335--1242362	14	2.0	14	100	0	56	0	0	71	28	0.86
1242361--1242431	6	11.8	6	98	0	97	25	0	74	0	0.82
1243600--1243651	24	2.2	24	85	0	68	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1243611--1243715	25	4.1	25	71	14	72	42	0	0	56	1.06
1243693--1243726	17	1.9	17	88	5	50	44	0	2	52	1.16
1243845--1243886	2	21.0	2	100	0	84	50	0	0	50	1.00
1244433--1244483	16	3.1	16	80	5	57	54	3	0	41	1.19
1244503--1244585	16	4.8	16	69	24	53	59	0	0	40	0.98
1244498--1244551	20	2.5	23	80	17	71	57	0	0	42	0.98
1244433--1244590	17	8.8	17	66	23	58	55	2	0	41	1.13
1244433--1244590	32	5.0	32	66	23	84	55	2	0	41	1.13
1245804--1245832	10	3.0	10	95	5	51	20	0	0	79	0.74
1245976--1246000	13	1.9	13	100	0	50	32	20	16	32	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20