genome.fa.s206.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold206
Parameters: 2 7 7 80 10 50 1000
Length:  2736418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  15  of  20  ( 2337 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1937267--1937727	156	3.0	156	83	2	525	22	19	20	36	1.95
1937576--1937869	145	2.0	146	81	5	337	25	19	19	35	1.96
1940232--1940378	77	1.9	78	85	1	206	27	25	12	34	1.92
1940261--1940485	78	2.9	78	80	4	224	27	23	12	37	1.90
1946517--1946582	22	3.1	21	79	14	73	72	12	1	13	1.19
1947870--1948040	52	3.3	51	82	4	200	23	20	16	39	1.92
1948431--1948558	58	2.2	58	90	2	195	28	29	21	20	1.98
1948447--1948571	58	2.2	58	88	2	180	26	29	23	20	1.99
1948738--1949197	156	3.0	154	80	6	502	25	24	15	34	1.94
1948729--1949196	52	9.0	53	79	7	401	25	24	14	34	1.94
1949258--1949388	57	2.3	58	89	1	192	23	25	18	32	1.97
1950245--1950290	20	2.2	21	84	3	58	41	10	15	32	1.82
1950348--1950450	52	2.0	51	88	3	154	29	14	11	44	1.80
1962642--1962680	18	2.2	18	85	0	51	71	7	2	17	1.21
1963254--1963404	73	2.1	73	93	0	257	30	23	7	39	1.82
1963784--1963875	32	2.8	32	81	12	105	30	13	22	33	1.92
1965293--1965334	15	2.9	14	83	13	50	69	2	2	26	1.13
1973907--1974136	114	2.0	115	98	0	444	38	12	8	40	1.72
1976518--1976575	21	2.8	21	81	7	73	39	15	12	32	1.84
1976612--1976676	32	2.0	32	93	0	112	33	12	15	38	1.85
1976631--1976657	13	2.1	13	100	0	54	29	14	14	40	1.86
1976612--1976678	19	3.8	19	74	22	74	35	11	14	37	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1976718--1976743	13	2.0	13	100	0	52	30	15	15	38	1.88
1976698--1976764	33	2.0	33	88	0	98	25	14	16	43	1.86
1979165--1979315	82	1.9	81	83	4	198	30	27	13	28	1.94
1979247--1979453	103	2.0	103	83	2	263	30	24	11	33	1.90
1979247--1979453	52	4.0	51	83	3	243	30	24	11	33	1.90
1979458--1979525	28	2.4	28	82	0	73	22	33	17	26	1.96
1984023--1984049	14	1.9	14	100	0	54	29	0	0	70	0.88
1992518--1992555	20	1.9	20	88	0	58	39	7	21	31	1.82
1993292--1994927	821	2.0	815	95	1	2934	26	18	15	40	1.90
1997796--1997858	33	1.9	33	93	0	108	34	14	15	34	1.88
1998581--1998652	36	2.0	35	86	2	99	26	29	11	33	1.91
1999206--1999230	13	1.9	13	100	0	50	32	16	16	36	1.90
1999220--1999270	20	2.5	20	90	0	84	47	19	11	21	1.81
1999365--1999410	22	2.1	21	84	11	58	32	6	6	54	1.52
1999504--1999553	20	2.5	20	93	3	84	48	14	2	36	1.55
2001111--2001153	13	3.2	13	83	3	50	41	6	13	37	1.72
2004262--2004354	36	2.8	32	78	13	91	33	24	11	30	1.91
2004288--2004355	36	1.9	35	85	8	93	30	27	10	30	1.90
2004807--2004832	13	2.0	13	100	0	52	38	15	15	30	1.88
2005584--2005622	13	3.0	13	84	0	60	58	15	0	25	1.37
2006769--2006834	20	3.7	20	69	26	74	33	18	16	31	1.93
2006770--2006867	33	3.0	33	91	5	146	34	15	17	32	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2008440--2008479	3	13.3	3	94	0	71	35	0	35	30	1.58
2013124--2013166	21	2.0	22	86	4	61	27	20	0	51	1.48
2014872--2014919	24	2.0	24	100	0	96	45	4	8	41	1.53
2014917--2014964	22	2.1	23	88	3	71	33	4	16	45	1.67
2015538--2015564	13	2.1	13	100	0	54	29	14	14	40	1.86
2015519--2015582	32	2.0	32	87	9	94	28	15	15	40	1.88
2015548--2015602	19	2.8	19	83	2	65	32	16	16	34	1.91
2017257--2017288	3	10.7	3	93	0	55	37	0	34	28	1.57
2018806--2018830	13	1.9	13	100	0	50	32	8	20	40	1.81
2019028--2019067	21	1.9	21	89	0	62	55	27	2	15	1.53
2025085--2025127	22	2.0	22	90	9	70	39	9	6	44	1.64
2026448--2026478	13	2.4	13	94	0	53	35	12	16	35	1.87
2026428--2026494	33	2.0	33	88	11	102	32	17	13	35	1.89
2026521--2026577	19	2.9	20	84	5	80	31	15	17	35	1.92
2026563--2026589	13	2.1	13	100	0	54	40	14	14	29	1.86
2035234--2035264	13	2.4	13	94	0	53	35	12	16	35	1.87
2035214--2035280	33	2.0	33	88	11	102	32	17	13	35	1.89
2037364--2037402	19	2.0	20	85	5	53	58	0	2	38	1.12
2038917--2038969	25	2.1	26	92	3	90	47	3	3	45	1.39
2040341--2040404	12	5.4	12	72	22	55	34	0	0	65	0.93
2040343--2040415	22	3.3	23	79	12	73	38	0	0	61	0.96
2041446--2041512	22	3.0	23	75	14	68	64	1	0	34	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2041445--2041499	29	1.9	28	88	3	83	63	0	0	36	0.95
2041461--2041495	13	2.8	12	87	12	52	62	0	0	37	0.95
2041800--2041853	19	2.8	20	83	11	67	50	0	0	50	1.00
2041824--2041908	40	2.2	38	81	14	93	38	0	0	61	0.96
2041820--2041946	32	3.9	33	73	16	113	39	0	0	60	0.97
2041875--2041930	17	3.5	17	79	20	68	33	0	0	66	0.92
2043710--2043740	16	1.9	16	100	0	62	74	0	0	25	0.82
2045922--2045977	2	28.0	2	96	0	103	50	1	0	48	1.11
2046418--2046461	23	2.0	22	83	12	56	45	0	0	54	0.99
2048338--2048386	22	2.2	23	78	10	57	36	0	8	55	1.30
2049427--2049484	19	3.2	18	83	9	64	63	0	1	34	1.04
2049450--2049501	22	2.4	22	87	6	70	59	0	0	40	0.97
2049970--2050004	18	2.0	18	88	5	54	51	5	0	42	1.25
2050199--2050239	20	2.0	20	86	9	57	53	0	2	43	1.13
2050362--2050417	22	2.5	22	71	5	60	48	1	1	48	1.22
2050501--2050570	19	3.7	18	74	16	52	48	0	1	50	1.09
2050821--2050858	19	2.0	19	90	10	60	47	2	2	47	1.30
2054546--2054573	2	14.0	2	100	0	56	50	0	50	0	1.00
2056732--2056763	2	16.0	2	93	0	55	46	0	3	50	1.17
2066528--2066560	17	2.0	17	88	5	50	42	24	15	18	1.88
2067351--2067403	2	26.0	2	92	3	88	50	0	47	1	1.12
2067563--2067614	24	2.1	23	86	10	68	51	3	0	44	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2068517--2068570	25	2.1	26	82	6	65	42	3	0	53	1.18
2070639--2070687	18	3.1	16	71	28	50	53	4	2	40	1.32
2071316--2071378	23	2.7	23	76	11	56	42	1	0	55	1.09
2071331--2071378	23	2.0	24	84	12	62	41	2	0	56	1.11
2076254--2076281	2	14.0	2	100	0	56	50	0	0	50	1.00
2077371--2077405	17	2.1	16	89	5	52	34	0	0	65	0.93
2083165--2083215	26	2.0	25	82	14	61	49	0	3	47	1.20
2083814--2083918	41	2.6	40	79	11	99	45	0	0	53	1.06
2084294--2084358	28	2.2	31	81	10	73	47	3	0	49	1.17
2084699--2084733	16	2.2	16	89	0	52	62	17	0	20	1.32
2084746--2084781	16	2.2	16	90	9	56	52	11	11	25	1.69
2088692--2088793	52	2.0	52	84	3	134	43	19	10	26	1.84
2089890--2089930	13	3.1	14	86	10	59	53	0	0	46	1.00
2091021--2091058	15	2.5	15	87	12	51	47	0	0	52	1.00
2091043--2091091	24	2.0	24	81	14	57	44	0	2	53	1.12
2091802--2091841	16	2.5	16	88	8	55	57	0	0	42	0.98
2091858--2091909	20	2.5	20	81	6	59	48	0	3	48	1.20
2091961--2091993	16	2.1	16	88	11	50	42	0	0	57	0.98
2092712--2092791	28	2.9	29	76	10	87	46	0	0	53	1.00
2093565--2093602	19	2.0	19	85	10	51	31	0	0	68	0.90
2094956--2094998	2	22.0	2	95	4	79	51	0	0	48	1.00
2096745--2096785	3	13.7	3	100	0	82	68	0	0	31	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2100089--2100156	35	1.9	35	82	5	84	50	0	0	50	1.00
2100212--2100249	15	2.4	16	86	8	51	57	0	2	39	1.12
2101086--2101153	21	3.3	21	69	22	72	42	1	2	52	1.25
2101085--2101152	23	3.2	22	64	23	56	42	1	2	52	1.25
2101085--2101189	36	2.7	39	84	5	126	42	1	3	51	1.31
2102259--2102311	20	2.7	20	85	5	72	58	1	0	39	1.09
2102601--2102761	11	14.2	11	68	14	62	58	1	0	40	1.06
2102608--2102664	14	4.0	15	80	13	59	66	0	0	33	0.92
2102610--2102664	24	2.3	23	87	6	74	67	0	0	32	0.91
2102611--2102735	15	7.8	17	71	22	67	60	0	0	39	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20