genome.fa.s206.2.7.7.80.10.50.1000.12.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold206
Parameters: 2 7 7 80 10 50 1000
Length:  2736418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  12  of  20  ( 2337 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1458841--1458884	20	2.2	20	83	0	52	65	0	0	34	0.93
1459066--1459109	23	1.9	23	90	0	70	22	9	0	68	1.18
1460497--1460548	21	2.5	21	96	0	95	36	23	5	34	1.79
1467521--1467560	3	13.0	3	89	5	62	62	2	0	35	1.09
1467789--1467831	17	2.5	17	82	10	52	39	0	2	58	1.11
1467794--1467849	17	3.1	19	78	16	57	41	0	1	57	1.09
1467778--1467843	18	3.9	16	74	18	55	40	0	1	57	1.08
1468359--1468410	20	2.5	20	81	3	59	61	1	0	36	1.07
1468418--1468461	18	2.5	17	81	7	52	50	0	4	45	1.22
1468544--1468586	19	2.3	19	84	8	52	30	4	4	60	1.37
1468581--1468618	14	2.6	15	83	8	51	52	0	2	44	1.14
1469721--1469792	28	2.5	29	90	2	110	44	11	18	26	1.83
1470749--1470813	24	2.6	25	76	16	73	75	1	0	23	0.89
1470749--1470798	14	3.3	14	83	11	55	76	2	0	22	0.89
1470765--1470790	7	3.7	7	100	0	52	76	0	0	23	0.78
1470755--1470876	9	14.4	9	69	19	52	72	4	0	22	1.07
1471038--1471062	5	5.0	5	100	0	50	20	20	20	40	1.92
1471037--1471071	15	2.3	15	85	0	52	20	17	17	45	1.85
1473787--1473933	69	2.1	69	87	2	215	28	17	12	40	1.87
1480053--1480201	28	5.3	28	90	3	158	22	30	16	30	1.96
1480134--1480641	28	18.3	28	86	2	688	24	32	13	28	1.94
1480643--1481207	32	17.6	32	82	5	586	30	30	16	22	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1481918--1481968	8	6.5	8	78	13	52	80	3	0	15	0.86
1481918--1481967	23	2.2	23	92	7	84	80	4	0	16	0.87
1481918--1481971	7	7.1	7	78	15	54	79	3	0	16	0.87
1481918--1481971	15	3.5	15	76	14	56	79	3	0	16	0.87
1484942--1485096	69	2.2	69	85	2	195	32	17	9	40	1.81
1493805--1493829	13	1.9	13	100	0	50	48	8	0	44	1.32
1493995--1494037	19	2.1	20	87	12	61	23	6	2	67	1.27
1494831--1494904	23	3.1	22	70	26	62	54	0	0	45	1.00
1494883--1494944	30	2.1	30	81	6	72	48	0	0	51	1.00
1494889--1494950	32	1.9	32	83	6	81	50	0	0	50	1.00
1494917--1494960	20	2.3	20	80	7	56	54	0	0	45	0.99
1495783--1495835	26	2.0	26	86	13	74	49	0	0	50	1.00
1496664--1496697	7	4.7	7	96	3	59	41	2	0	55	1.15
1501090--1501136	2	23.5	2	100	0	94	51	0	0	48	1.00
1502815--1502849	15	2.2	16	90	10	54	45	0	5	48	1.26
1503982--1504021	14	2.8	16	78	21	52	62	0	0	37	0.95
1505728--1505764	19	1.9	19	94	0	65	45	2	0	51	1.15
1510535--1510596	26	2.4	25	76	10	63	53	0	0	46	1.00
1510531--1510578	13	3.7	13	77	0	51	50	0	0	50	1.00
1510782--1510838	27	2.2	25	78	9	62	56	0	0	43	0.99
1511883--1511928	19	2.4	18	82	10	56	36	2	2	58	1.22
1512058--1512102	23	2.0	23	90	0	72	26	4	6	62	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1513131--1513179	22	2.2	22	85	10	64	38	0	4	57	1.18
1513159--1513302	73	2.0	72	87	1	207	39	3	6	50	1.44
1513959--1514009	19	2.7	19	84	0	66	33	0	0	66	0.92
1514006--1514047	20	2.0	21	86	4	59	47	0	2	50	1.14
1514015--1514060	14	3.4	14	79	8	51	50	0	2	47	1.13
1515840--1515944	52	2.0	52	98	0	201	21	21	13	42	1.87
1518279--1518356	23	3.4	23	66	7	59	26	7	15	50	1.71
1518279--1518372	46	2.0	46	97	0	179	31	6	13	47	1.68
1518761--1518800	8	5.0	8	87	0	53	55	0	2	42	1.13
1519310--1519374	21	3.1	21	73	13	62	47	4	1	46	1.32
1519505--1519538	15	2.2	16	89	5	52	29	2	0	67	1.05
1521424--1521548	65	1.9	65	90	0	196	36	21	16	26	1.94
1522182--1522206	12	2.1	12	100	0	50	24	16	16	44	1.86
1523786--1523821	17	2.0	17	89	10	54	61	2	0	36	1.11
1524516--1524558	23	1.9	22	90	4	68	46	0	0	53	1.00
1525893--1525947	25	2.2	25	83	9	67	54	0	1	43	1.10
1526118--1526183	19	3.6	18	78	12	62	63	1	3	31	1.19
1526143--1526194	18	2.9	19	80	8	56	63	1	0	34	1.06
1526186--1526243	27	2.2	26	84	9	73	55	0	0	44	0.99
1527515--1527572	28	2.0	29	83	6	73	51	0	0	48	1.00
1528781--1528820	20	2.0	20	95	0	71	50	10	17	22	1.76
1530270--1530376	52	2.0	53	83	5	137	33	25	17	23	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1531219--1531284	31	2.1	31	88	5	96	45	10	10	33	1.73
1531359--1531414	12	4.6	12	76	10	51	62	3	1	32	1.23
1532042--1532091	22	2.3	22	79	6	57	36	2	2	60	1.20
1532681--1532739	31	2.0	29	81	15	68	45	6	6	40	1.57
1534242--1534267	13	2.0	13	100	0	52	76	0	0	23	0.78
1536387--1536471	11	8.1	11	71	19	65	30	0	2	67	1.04
1536395--1536473	30	2.5	33	76	12	94	32	0	1	65	1.00
1536599--1536652	8	6.9	8	72	19	51	46	0	1	51	1.11
1536591--1536657	31	2.1	33	88	5	102	46	0	1	52	1.09
1536585--1536638	14	3.7	14	75	15	56	46	0	1	51	1.11
1536603--1536711	5	22.2	5	66	20	52	38	0	0	59	1.10
1536602--1536687	19	4.5	19	71	12	61	40	0	1	58	1.06
1536649--1536705	24	2.4	24	88	8	82	33	0	0	66	0.92
1536634--1536716	19	4.6	18	73	14	73	34	1	0	63	1.02
1536958--1537044	38	2.5	33	76	16	93	60	2	0	36	1.09
1537857--1537904	24	2.0	24	87	0	69	52	0	6	41	1.27
1538585--1538613	13	2.2	13	100	0	58	58	6	0	34	1.25
1538949--1538991	16	2.7	17	79	13	56	44	4	0	51	1.22
1540926--1540976	15	3.3	15	76	15	50	41	0	11	47	1.40
1542105--1542157	5	10.6	5	78	15	56	77	0	16	5	0.96
1544133--1544163	14	2.2	14	100	0	62	35	0	0	64	0.94
1544129--1544208	33	2.5	33	84	7	96	40	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1544140--1544290	33	4.5	33	74	13	121	39	1	0	58	1.11
1544154--1544290	18	7.9	17	70	21	72	40	1	0	57	1.13
1544238--1544284	19	2.6	18	80	6	58	36	0	0	63	0.94
1546847--1546881	18	1.9	18	88	11	54	34	0	0	65	0.93
1547748--1547809	22	2.7	22	85	5	79	58	0	0	41	0.98
1550333--1550375	2	21.5	2	95	0	77	48	2	0	48	1.14
1552863--1552905	17	2.5	17	88	0	68	41	0	0	58	0.98
1552875--1552913	17	2.3	17	86	8	53	35	0	2	61	1.10
1553177--1553233	15	3.9	14	76	14	62	56	7	1	35	1.37
1553778--1553853	27	2.8	27	81	0	89	28	3	18	48	1.66
1554559--1554651	30	3.1	30	67	14	93	46	15	18	20	1.84
1554542--1554661	59	2.0	59	98	0	231	45	13	17	23	1.83
1557547--1557623	32	2.3	34	86	8	113	51	0	0	48	1.00
1559337--1559381	21	2.2	21	88	7	67	77	0	0	22	0.76
1559984--1560028	18	2.5	18	85	7	56	46	0	0	53	1.00
1559978--1560036	21	2.9	21	78	12	68	47	0	0	52	1.00
1559993--1560035	22	2.0	22	90	4	70	51	0	0	48	1.00
1560152--1560199	23	2.1	22	84	3	60	64	0	0	35	0.94
1560176--1560212	20	1.9	19	89	10	58	62	0	0	37	0.96
1560164--1560258	28	3.4	27	78	17	88	62	0	1	36	1.03
1560496--1560538	22	2.0	21	90	4	68	53	0	0	46	1.00
1560712--1560757	24	1.9	24	90	0	74	43	0	4	52	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1562200--1562249	16	3.1	16	81	16	59	58	0	0	42	0.98
1562694--1562758	25	2.8	23	76	17	64	52	1	0	46	1.10
1564060--1564111	27	1.9	27	84	0	68	57	0	0	42	0.98
1577672--1577719	24	2.0	24	91	0	78	22	18	14	43	1.87
1578818--1578856	21	1.9	20	89	5	60	61	2	0	35	1.10
1578819--1578859	12	3.7	12	78	18	52	60	2	0	36	1.10
1579399--1579434	17	2.1	18	94	5	65	72	0	0	27	0.85
1579600--1579632	3	11.0	3	93	0	57	33	3	0	63	1.10
1590707--1590750	3	14.7	3	85	0	61	31	2	2	63	1.19
1591201--1591240	21	2.0	21	85	5	55	45	0	0	55	0.99

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20