genome.fa.s206.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold206
Parameters: 2 7 7 80 10 50 1000
Length:  2736418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  8  of  20  ( 2337 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1006530--1006589	21	2.8	21	73	16	52	50	1	3	45	1.28
1009038--1009147	28	3.9	27	71	19	73	55	0	3	40	1.17
1009114--1009157	23	1.9	22	86	9	61	56	0	0	43	0.99
1009128--1009195	18	4.2	17	72	23	58	57	0	0	42	0.98
1009129--1009195	34	2.0	32	86	11	91	58	0	0	41	0.98
1009502--1009543	22	1.9	21	85	9	57	50	4	2	42	1.36
1009498--1009544	22	2.2	20	79	17	51	51	4	2	42	1.33
1009701--1009741	10	3.8	10	84	15	55	24	2	0	73	0.96
1009700--1009763	23	2.9	23	84	13	73	26	4	0	68	1.09
1009701--1009763	12	5.6	11	79	17	60	26	3	0	69	1.03
1009709--1009764	22	2.5	22	82	8	60	28	3	0	67	1.07
1011231--1011604	206	1.8	208	88	4	585	32	12	19	36	1.88
1021042--1021077	2	18.0	2	100	0	72	50	0	50	0	1.00
1021280--1021349	35	2.0	35	100	0	140	28	42	11	17	1.83
1030308--1030349	12	4.0	10	82	17	50	50	0	0	50	1.00
1030269--1030349	11	7.5	11	74	14	53	48	0	1	50	1.08
1030269--1030398	58	2.2	58	82	9	149	50	0	0	48	1.06
1031759--1031801	15	2.9	15	86	3	52	55	0	0	44	0.99
1032120--1032175	21	2.6	20	77	22	60	58	1	0	39	1.08
1032250--1032282	13	2.3	15	90	10	52	42	3	0	54	1.15
1033388--1033417	16	1.9	15	93	6	51	46	0	0	53	1.00
1033842--1033876	11	3.2	11	84	15	54	77	0	0	22	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1042784--1042815	6	5.3	6	100	0	64	15	0	0	84	0.63
1043646--1043695	22	2.3	22	83	13	59	58	2	0	40	1.10
1044454--1044487	3	11.3	3	100	0	68	64	0	35	0	0.94
1046763--1046828	9	7.0	9	70	16	53	51	0	0	48	1.00
1046757--1046834	21	3.7	21	76	11	79	52	0	0	47	1.00
1046762--1046835	26	2.7	27	81	12	80	51	0	0	48	1.00
1046762--1046838	27	2.8	27	78	13	86	51	0	0	48	1.00
1047151--1047202	20	2.7	21	74	14	58	40	0	0	59	0.97
1049568--1049905	143	2.3	147	84	3	425	41	20	13	23	1.88
1049586--1049977	143	2.8	140	81	6	391	41	20	15	22	1.89
1050006--1050201	102	1.9	101	90	3	313	35	17	14	33	1.90
1051867--1051911	21	2.1	22	84	12	58	60	0	0	40	0.97
1051858--1051911	20	2.6	21	80	11	58	61	0	0	38	0.96
1056269--1056380	30	3.7	30	82	0	143	32	25	8	33	1.87
1056277--1056411	30	4.5	30	81	1	94	34	22	9	34	1.87
1057608--1057674	20	3.3	21	83	6	86	65	1	2	29	1.16
1057594--1057671	11	7.3	11	74	10	72	62	2	3	30	1.26
1057680--1057793	48	2.3	50	77	15	121	56	1	3	38	1.27
1058264--1058359	5	20.0	5	76	18	89	39	1	0	59	1.04
1058537--1058600	22	3.0	21	77	18	71	43	0	0	56	0.99
1058545--1058597	18	2.8	19	82	5	63	45	0	0	54	0.99
1060435--1060490	27	2.1	27	83	6	71	62	0	1	35	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1061357--1061910	15	36.7	15	76	16	357	86	1	9	2	0.72
1061355--1061910	28	20.5	26	77	11	489	86	1	8	2	0.72
1061339--1061910	134	4.3	128	80	12	537	86	1	9	2	0.74
1061355--1061910	122	4.6	117	82	8	566	86	1	8	2	0.72
1061337--1061910	31	18.0	32	76	15	369	86	1	9	2	0.74
1061355--1061803	1	449.0	1	79	0	457	89	2	6	1	0.64
1061355--1061910	69	8.1	69	79	12	515	86	1	8	2	0.72
1061370--1062002	135	4.5	134	78	13	547	85	3	8	3	0.82
1061356--1061999	141	4.5	142	78	10	469	85	3	8	3	0.81
1062573--1062615	23	2.0	21	86	9	59	46	0	0	53	1.00
1063313--1063361	23	2.1	23	85	7	64	59	2	0	38	1.09
1063321--1063358	19	2.0	20	85	15	53	60	2	0	36	1.11
1063625--1063758	11	12.5	11	66	20	70	32	0	5	60	1.26
1064174--1064240	29	2.3	29	75	7	66	37	2	1	58	1.23
1064167--1064207	14	3.2	13	83	13	50	34	4	0	60	1.18
1064271--1064327	22	2.7	21	76	12	53	33	7	7	52	1.55
1065634--1065679	3	15.3	3	100	0	92	67	0	0	32	0.91
1066407--1066439	3	11.0	3	100	0	66	66	0	0	33	0.92
1067811--1067889	21	3.9	21	80	8	85	43	0	0	56	0.99
1068231--1068287	18	3.1	19	72	12	55	50	1	1	45	1.22
1068219--1068305	36	2.4	36	81	12	99	47	1	1	50	1.16
1068893--1069220	174	1.9	174	83	7	425	31	21	17	28	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1071190--1071232	15	2.8	16	86	13	63	48	2	0	48	1.14
1071189--1071232	2	23.5	2	78	21	51	47	2	0	50	1.13
1072020--1072064	23	2.0	21	87	8	63	42	0	2	55	1.12
1073043--1073082	20	2.0	21	85	5	55	42	0	2	55	1.13
1073979--1074009	4	8.0	4	92	7	55	25	0	0	74	0.82
1073981--1074009	15	1.9	15	100	0	58	24	0	0	75	0.80
1074208--1074250	2	21.5	2	90	0	68	51	0	4	44	1.22
1079791--1079829	13	3.0	13	81	11	53	64	0	0	35	0.94
1080371--1080435	31	2.0	33	82	11	82	41	9	3	46	1.51
1082005--1082124	21	5.8	20	72	10	73	31	11	15	41	1.82
1086504--1086544	11	3.8	11	81	15	50	39	0	0	60	0.96
1086499--1086539	20	2.0	20	90	9	66	36	0	0	63	0.95
1086866--1086981	35	3.3	35	73	20	100	54	0	2	42	1.20
1086965--1087008	13	3.2	13	84	9	61	65	0	0	34	0.93
1088355--1088458	49	2.1	49	96	1	190	29	15	21	33	1.94
1088603--1088658	27	2.1	27	86	3	78	32	5	1	60	1.29
1090117--1090142	9	2.9	9	100	0	52	57	0	0	42	0.98
1091939--1091979	18	2.3	18	87	4	57	41	0	0	58	0.98
1091939--1091976	16	2.3	17	90	4	60	42	0	0	57	0.98
1098471--1098527	2	30.0	2	79	10	57	40	0	1	57	1.09
1098454--1098530	36	2.1	36	83	9	95	36	1	1	61	1.13
1098463--1098528	28	2.3	30	84	7	84	36	1	1	60	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1098949--1098991	19	2.3	18	88	4	59	46	0	2	51	1.13
1100175--1100216	16	2.4	18	84	15	61	50	0	0	50	1.00
1100152--1100395	136	1.8	135	87	8	372	39	3	2	53	1.33
1100833--1100885	10	5.2	11	76	15	51	62	0	3	33	1.13
1102866--1102912	24	1.9	25	86	4	69	42	0	2	55	1.12
1103091--1103125	9	3.8	9	85	7	52	48	0	0	51	1.00
1103107--1103163	16	3.6	15	70	11	51	45	0	0	54	0.99
1103103--1103208	21	5.1	21	80	13	105	52	0	0	47	1.00
1103168--1103216	25	2.0	24	88	4	71	61	0	0	38	0.96
1103157--1103221	19	3.3	19	80	10	60	56	0	0	43	0.99
1130386--1130445	14	4.3	14	68	6	50	41	0	0	58	0.98
1130387--1130460	22	3.5	22	77	15	77	41	0	0	58	0.98
1130489--1130524	15	2.4	15	90	9	56	50	5	0	44	1.25
1131210--1131276	26	2.6	25	83	6	80	37	7	2	52	1.45
1131336--1131370	18	2.0	18	94	5	63	51	5	0	42	1.25
1133049--1133077	2	14.5	2	100	0	58	48	0	0	51	1.00
1141476--1141515	21	1.9	21	89	0	62	50	0	0	50	1.00
1142620--1142671	16	3.1	17	80	8	61	42	0	0	57	0.98
1142616--1142705	20	4.1	23	71	21	59	43	1	0	55	1.07
1143475--1143512	20	2.0	20	90	10	62	68	0	0	31	0.90
1143587--1143653	27	2.4	28	70	5	64	49	0	0	50	1.00
1143630--1143684	20	2.7	20	81	13	67	50	0	0	49	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1143878--1143955	18	4.3	18	72	18	63	37	1	1	60	1.13
1143941--1143996	17	3.4	18	68	26	52	48	0	0	51	1.00
1143937--1143988	20	2.6	19	79	8	59	50	0	0	50	1.00
1143941--1143999	18	3.6	18	70	27	58	49	0	0	50	1.00
1144496--1144529	3	11.3	3	100	0	68	67	0	0	32	0.91
1145879--1145921	17	2.6	16	75	10	50	30	0	2	67	1.03
1145866--1145939	29	2.6	29	79	16	84	39	0	1	59	1.06
1145925--1145979	24	2.3	24	75	6	58	60	0	0	40	0.97
1146680--1146733	25	2.2	24	83	9	65	42	1	0	55	1.10
1147040--1147141	10	9.5	10	70	19	64	40	0	1	57	1.10

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20