genome.fa.s206.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold206
Parameters: 2 7 7 80 10 50 1000
Length:  2736418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  4  of  20  ( 2337 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
564906--564958	23	2.3	23	77	9	54	50	0	1	47	1.12
565130--565203	20	3.6	20	70	24	64	39	1	0	59	1.06
565188--565237	22	2.3	22	82	6	66	52	0	0	48	1.00
567492--567600	32	3.2	34	74	25	99	52	0	0	47	1.00
567492--567538	25	2.0	25	87	8	71	55	0	0	44	0.99
567524--567613	11	7.6	11	72	18	58	53	0	0	46	1.00
568811--568849	5	8.6	5	81	18	50	64	0	0	35	0.94
568813--568860	14	3.3	14	83	16	62	64	0	0	35	0.94
568811--568859	20	2.5	20	87	12	66	63	0	0	36	0.95
568818--568903	10	8.6	10	75	15	63	59	0	0	40	0.97
568844--568901	30	1.9	31	86	10	84	56	0	0	43	0.99
568856--568950	44	2.1	47	81	13	110	52	2	0	45	1.12
569419--569463	24	1.9	24	86	13	67	53	4	4	37	1.41
569467--569521	20	2.6	22	75	16	62	56	0	0	43	0.99
569612--569674	32	1.9	34	81	12	78	50	1	0	47	1.10
570092--570147	21	2.5	24	86	13	75	60	0	0	39	0.97
570092--570168	20	3.6	21	81	13	79	61	0	0	38	0.96
570120--570197	20	4.0	19	73	18	63	64	0	0	35	0.94
572092--572125	2	17.0	2	100	0	68	50	0	0	50	1.00
574552--574581	2	15.0	2	100	0	60	50	0	0	50	1.00
575343--575375	2	16.5	2	100	0	66	51	0	0	48	1.00
577745--577820	25	2.8	27	76	15	77	47	0	0	52	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
577745--577838	30	3.3	29	73	14	72	45	0	1	53	1.07
579488--579517	16	1.9	15	93	6	51	23	0	26	50	1.50
582590--582634	22	2.0	22	82	0	54	40	0	0	60	0.97
582701--582744	5	8.6	5	80	14	54	63	0	0	36	0.95
582692--582748	21	2.5	22	77	16	53	57	0	0	42	0.98
583486--583555	29	2.3	29	80	9	79	51	0	0	48	1.00
583511--583565	15	3.7	15	76	11	51	45	0	3	50	1.19
583771--583848	18	4.6	18	72	18	69	44	0	0	55	0.99
583797--583844	16	3.1	15	72	21	53	45	0	0	54	0.99
583780--583856	32	2.4	33	87	8	115	42	0	0	57	0.99
583795--583843	14	3.2	14	74	20	53	46	0	0	53	1.00
584879--584926	2	24.0	2	79	8	53	50	4	0	45	1.21
586483--586991	102	5.0	102	93	0	847	18	14	29	36	1.91
588160--588213	26	2.1	26	85	0	72	31	12	5	50	1.64
588879--588919	22	1.9	22	85	5	57	43	2	21	31	1.66
588956--589000	20	2.3	19	81	14	56	35	0	24	40	1.56
594780--594861	42	2.0	42	83	9	105	39	3	0	57	1.16
595121--595171	25	2.1	24	89	7	77	35	7	9	47	1.66
595813--595847	4	8.8	4	100	0	70	25	0	22	51	1.48
596705--596737	2	16.5	2	100	0	66	48	0	51	0	1.00
601508--601551	23	2.0	23	86	4	63	47	0	2	50	1.13
601495--601578	28	3.1	28	83	13	113	51	0	1	47	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
602402--602435	17	2.0	17	88	0	50	41	0	0	58	0.98
606431--606472	21	2.0	21	95	0	75	40	4	16	38	1.70
609712--609773	8	8.1	8	69	16	51	40	0	0	59	0.97
609714--609793	6	12.3	7	68	22	50	41	0	0	58	0.98
609736--609803	20	3.3	21	74	15	70	47	0	0	52	1.00
610152--610261	34	3.2	34	74	13	100	40	1	0	57	1.09
610136--610234	19	5.4	20	72	22	67	42	1	0	56	1.06
610607--610672	18	3.9	18	69	15	50	56	0	0	43	0.99
610630--610726	20	4.7	21	69	15	69	54	2	2	41	1.23
610602--610686	32	2.6	32	85	5	109	56	0	0	43	0.99
613254--613306	10	5.1	10	76	15	54	41	0	0	58	0.98
613237--613306	21	3.4	21	75	13	65	47	0	0	52	1.00
613196--613304	41	2.6	41	78	8	103	47	0	0	51	1.07
613441--613490	19	2.6	21	79	20	65	52	0	0	48	1.00
615222--615264	22	2.0	20	86	8	59	46	0	0	53	1.00
615227--615257	15	2.1	14	94	5	53	48	0	0	51	1.00
615224--615275	12	4.2	12	83	9	61	50	0	0	50	1.00
615982--616027	19	2.5	18	83	13	58	45	0	0	54	0.99
616035--616070	18	1.9	19	88	5	56	72	0	0	27	0.85
616451--616475	3	8.3	3	100	0	50	32	0	0	68	0.90
617084--617124	19	2.2	20	86	8	59	53	0	0	46	1.00
620050--620118	31	2.3	31	80	12	81	65	1	0	33	1.02
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
621358--621422	20	3.2	20	75	14	62	61	0	0	38	0.96
621356--621427	26	2.7	27	80	10	85	59	1	0	38	1.06
621365--621420	5	10.8	5	83	14	69	62	0	0	37	0.95
622180--622222	18	2.6	16	85	10	59	69	0	0	30	0.88
623353--623402	23	2.2	23	85	10	75	48	0	0	52	1.00
623794--623866	35	2.0	35	84	5	92	45	0	1	53	1.09
623872--623907	15	2.3	16	90	4	56	63	0	0	36	0.94
624003--624032	13	2.2	14	94	5	53	36	0	0	63	0.95
624207--624280	2	38.5	2	74	12	57	54	0	2	43	1.14
624207--624267	17	3.7	16	75	14	52	52	0	3	44	1.17
625157--625215	23	2.5	23	76	17	59	57	0	0	42	0.98
625172--625234	22	2.9	21	77	11	56	55	1	0	42	1.09
628351--628390	3	13.3	3	100	0	80	67	0	0	32	0.91
630212--630241	13	2.3	13	94	0	51	53	0	3	43	1.17
633492--633533	12	3.7	12	81	9	52	33	0	0	66	0.92
634388--634440	20	2.6	20	84	3	70	41	11	5	41	1.64
634830--634854	11	2.3	11	100	0	50	48	8	8	36	1.62
635321--635366	22	2.1	21	88	11	67	63	0	0	36	0.95
635332--635374	14	3.0	14	79	3	50	67	0	0	32	0.91
635345--635380	17	2.1	18	89	5	56	66	0	0	33	0.92
635819--635872	25	2.2	26	80	10	67	50	3	3	42	1.38
635831--635892	25	2.4	25	81	2	70	45	4	4	45	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
635908--635953	22	2.1	22	84	4	58	65	0	2	32	1.05
635999--636041	20	2.0	21	86	13	61	51	0	0	48	1.00
636006--636068	29	2.2	28	83	5	90	52	0	0	47	1.00
636020--636094	13	5.2	15	74	17	70	50	0	0	49	1.00
637974--638003	14	2.1	14	93	0	51	50	16	0	33	1.46
638015--638047	2	16.5	2	100	0	66	0	0	48	51	1.00
639285--639314	14	2.1	14	93	0	51	43	3	20	33	1.68
643719--643752	17	1.9	18	88	5	52	38	0	5	55	1.24
648138--648193	19	3.1	17	73	16	51	33	0	1	64	1.04
648170--648225	29	2.0	29	86	6	80	37	0	0	62	0.95
648127--648214	38	2.4	37	76	14	101	38	1	1	59	1.13
648519--648549	16	1.9	16	93	0	53	41	3	6	48	1.45
648924--648989	24	2.8	24	79	6	73	65	1	0	33	1.02
663189--663277	43	2.1	43	93	0	151	56	2	7	33	1.41
663763--663903	11	13.5	11	68	19	52	60	0	0	38	1.02
663796--663910	8	14.2	8	69	26	57	57	0	0	42	0.98
663791--663910	32	3.7	33	79	16	135	57	0	0	42	0.98
663803--663870	18	3.9	19	71	25	60	51	0	0	48	1.00
663919--663966	23	2.1	23	100	0	96	35	12	4	47	1.60
666388--666455	32	2.4	25	70	30	64	45	0	1	52	1.09
666400--666450	16	3.1	18	71	28	58	45	0	1	52	1.12
667768--667792	13	1.9	13	100	0	50	40	12	24	24	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
668840--668889	22	2.4	21	75	12	50	58	0	0	42	0.98
669195--669236	22	1.9	22	90	0	66	57	0	4	38	1.20
669728--669772	16	2.7	17	77	19	58	46	0	2	51	1.13
670407--670470	26	2.5	25	80	19	71	42	0	0	57	0.98
671710--671737	13	2.2	13	100	0	56	42	0	0	57	0.99
672365--672407	22	1.9	23	85	4	61	69	4	0	25	1.07
672836--672870	15	2.3	15	90	0	52	80	0	0	20	0.72
672979--673009	16	1.9	16	93	0	53	32	0	0	67	0.91
680766--680825	20	2.9	21	80	9	61	76	1	3	18	1.00
680779--680828	20	2.5	20	86	0	73	76	0	2	22	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20