genome.fa.s206.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold206
Parameters: 2 7 7 80 10 50 1000
Length:  2736418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  3  of  20  ( 2337 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
442012--442068	21	2.8	21	76	12	64	61	0	0	38	0.96
442354--442399	2	24.0	2	86	8	69	47	0	2	50	1.13
442732--442784	5	10.4	5	76	11	54	60	0	0	39	0.97
442732--442794	16	4.1	16	76	15	62	58	0	0	41	0.98
442732--442820	30	3.0	30	75	16	87	56	0	0	43	0.99
442771--442816	16	2.9	15	87	6	56	52	0	0	47	1.00
443014--443145	20	6.7	19	72	8	79	65	7	3	22	1.34
446451--446499	6	7.7	6	95	4	71	32	0	0	67	0.91
446444--446499	7	8.1	7	86	13	73	30	1	0	67	1.01
446451--446499	13	3.8	13	92	7	82	32	0	0	67	0.91
446453--446526	16	4.5	17	75	19	50	37	1	0	60	1.05
446526--446582	23	2.6	22	74	15	55	42	0	0	57	0.98
446457--446586	21	5.9	23	70	20	82	40	0	0	58	1.03
446542--446590	17	2.6	19	78	21	59	38	0	0	61	0.96
455414--455445	2	16.0	2	100	0	64	50	0	50	0	1.00
456208--456262	19	2.8	20	83	13	69	52	0	1	45	1.11
456274--456334	24	2.5	24	83	2	77	52	1	0	45	1.10
456278--456316	20	2.0	20	90	10	62	51	0	0	48	1.00
466013--466045	6	5.7	6	89	7	50	54	0	0	45	0.99
466298--466348	14	3.6	14	77	17	52	41	3	0	54	1.19
466316--466366	25	2.1	25	89	7	79	49	1	0	49	1.12
467863--467921	26	2.3	26	85	2	75	50	3	3	42	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
468888--468948	23	2.6	24	89	10	99	40	3	0	55	1.16
469226--469272	15	3.2	15	74	14	53	34	0	0	65	0.93
469814--469865	18	2.8	18	79	5	59	26	1	5	65	1.26
469961--470001	13	3.0	14	82	13	50	60	0	0	39	0.96
469986--470027	17	2.4	18	84	15	61	42	0	0	57	0.99
470142--470184	3	14.7	3	95	4	79	65	0	0	34	0.93
470503--470536	2	17.0	2	100	0	68	50	0	50	0	1.00
474517--474555	18	2.1	19	85	4	53	41	0	2	56	1.13
477364--477396	2	17.0	2	90	6	50	45	0	3	51	1.16
478157--478267	12	8.8	12	67	22	59	59	0	1	37	1.14
478159--478239	29	2.9	28	72	23	71	56	0	2	40	1.12
478155--478264	37	3.0	35	75	11	98	59	0	1	38	1.15
482448--482516	30	2.3	31	87	9	108	21	28	1	47	1.59
484543--484609	31	2.2	32	81	5	75	53	0	1	44	1.09
487871--487932	27	2.3	27	83	5	72	43	0	3	53	1.17
493121--493151	13	2.4	13	100	0	62	58	0	0	41	0.98
494056--494098	3	14.3	3	100	0	86	32	0	0	67	0.91
494282--494321	21	1.9	21	85	10	55	52	0	2	45	1.14
494832--494925	30	3.2	30	82	11	115	54	1	2	42	1.19
495675--495726	25	2.0	26	81	3	61	36	1	5	55	1.35
495682--495741	26	2.4	25	85	2	75	31	3	10	55	1.50
495963--496005	21	2.0	21	86	8	61	41	2	0	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
496807--496836	14	2.1	14	93	0	51	76	6	0	16	0.99
498129--498183	27	2.0	27	92	0	92	34	5	7	52	1.52
498200--498232	11	2.8	12	86	9	50	21	12	0	66	1.23
499108--499141	18	1.9	18	94	5	61	58	0	0	41	0.98
499788--499850	23	2.7	23	80	7	65	38	1	3	57	1.24
511262--511326	3	23.0	3	76	14	59	66	0	0	33	0.92
511253--511411	40	3.9	39	82	14	171	61	0	0	37	1.01
511248--511409	13	12.6	13	67	24	60	61	0	0	37	1.01
511344--511401	20	3.1	20	72	20	54	60	0	0	39	0.97
511248--511422	79	2.2	79	76	16	175	61	0	0	38	1.01
511248--511422	60	2.9	61	68	24	138	61	0	0	38	1.01
511604--511644	3	13.7	3	100	0	82	68	0	0	31	0.90
514625--514686	31	2.0	30	93	3	106	33	0	0	66	0.92
514644--514696	23	2.4	22	84	12	72	37	0	0	62	0.96
514650--514696	22	2.2	21	88	11	69	36	0	0	63	0.94
515376--515412	7	5.1	7	87	6	56	27	0	0	72	0.84
515376--515412	15	2.5	15	91	4	58	27	0	0	72	0.84
515363--515427	22	3.0	22	77	4	69	35	1	0	63	1.04
515586--515638	28	1.9	27	81	11	63	52	3	1	41	1.30
516332--516464	35	3.8	34	71	16	101	36	0	0	62	1.06
516400--516465	11	6.4	11	72	22	54	33	0	0	66	0.92
516401--516463	5	12.4	5	74	15	58	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516393--516465	27	2.9	24	80	11	92	35	0	0	64	0.94
517101--517148	20	2.5	20	83	10	55	54	6	2	37	1.38
517750--517796	24	1.9	25	82	4	60	40	0	2	57	1.11
517813--517852	20	2.0	21	95	5	73	45	2	0	52	1.14
518372--518414	15	2.8	16	79	10	54	51	0	0	48	1.00
518705--518744	20	2.0	21	95	5	73	47	2	0	50	1.14
519215--519267	23	2.3	23	77	6	54	47	3	0	49	1.19
519225--519276	22	2.5	22	84	12	65	42	1	0	55	1.10
519306--519374	15	4.8	13	72	22	50	27	0	1	71	0.95
519311--519374	14	4.4	14	78	7	65	28	0	1	70	0.97
523411--523478	11	6.5	11	73	20	58	38	0	0	61	0.96
523411--523479	29	2.4	31	83	13	94	39	0	0	60	0.97
523993--524036	22	2.0	22	86	0	61	52	0	0	47	1.00
524309--524389	27	3.0	26	83	5	81	46	0	0	53	1.00
524361--524416	17	2.9	18	77	17	60	37	0	0	62	0.95
524353--524404	8	5.9	9	76	13	54	40	0	0	59	0.97
524917--524974	23	2.5	24	78	18	68	58	0	0	41	0.98
524912--524987	18	4.5	17	75	21	70	57	0	0	42	0.98
525672--525702	7	4.3	7	95	4	53	83	0	0	16	0.64
525664--525704	17	2.4	16	88	12	55	82	0	0	17	0.66
525672--525707	14	2.5	15	86	9	56	80	0	0	19	0.71
526003--526043	21	2.0	21	90	4	66	48	9	4	36	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526958--527001	23	1.9	23	86	9	63	38	0	0	61	0.96
527319--527367	16	3.2	16	78	18	52	46	0	0	53	1.00
529764--529795	16	1.9	17	93	6	57	65	0	0	34	0.93
531769--531801	17	2.1	16	88	11	50	45	3	0	51	1.16
531787--531847	21	3.0	21	80	9	63	47	0	0	52	1.00
534183--534219	2	18.5	2	94	0	65	48	0	2	48	1.15
534219--534258	2	20.0	2	94	0	71	47	0	50	2	1.14
537309--537421	44	2.6	44	91	0	190	32	15	28	23	1.95
541970--542006	2	18.5	2	100	0	74	0	51	0	48	1.00
544480--544521	10	4.0	10	80	19	50	42	0	0	57	0.99
544827--544942	5	24.4	5	64	18	52	41	0	0	56	1.11
544831--544955	18	6.5	18	68	17	65	40	0	0	57	1.10
544829--544949	42	2.8	43	77	15	131	41	0	0	57	1.10
544829--544965	45	3.1	43	76	15	136	41	1	0	56	1.13
545482--545519	18	2.1	19	90	5	60	55	0	0	44	0.99
547547--547620	10	7.5	10	74	17	66	64	0	1	33	1.02
548729--548754	2	13.0	2	100	0	52	50	0	0	50	1.00
549345--549412	30	2.3	30	84	2	93	44	8	17	29	1.79
550475--550509	2	17.5	2	100	0	70	48	0	0	51	1.00
550802--550837	10	3.8	10	85	14	58	69	0	0	30	0.89
552134--552166	2	16.5	2	100	0	66	0	48	0	51	1.00
557573--557602	14	2.1	14	93	0	51	23	26	6	43	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
559141--559171	3	10.3	3	100	0	62	32	0	0	67	0.91
559712--559772	27	2.2	29	85	5	81	40	0	3	55	1.16
559760--559806	18	2.6	17	77	9	58	40	0	0	59	0.97
559751--559835	41	2.1	41	82	10	104	43	0	0	56	0.99
559846--559886	21	2.0	20	86	9	57	63	0	2	34	1.08
561643--561697	17	3.1	19	75	17	55	54	0	0	45	0.99
562722--562767	20	2.3	20	82	10	58	71	6	0	21	1.08
563577--563611	18	1.9	18	88	0	52	28	0	2	68	1.04
564095--564154	15	3.9	15	74	20	52	51	0	0	48	1.00
564077--564139	25	2.5	24	80	12	74	52	0	0	47	1.00

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20