genome.fa.s206.2.7.7.80.10.50.1000.20.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold206
Parameters: 2 7 7 80 10 50 1000
Length:  2736418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  20  of  20  ( 2337 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2637964--2638015	7	7.6	7	91	4	79	50	0	0	50	1.00
2637964--2638015	14	3.8	14	89	5	88	50	0	0	50	1.00
2637966--2638015	13	3.7	13	92	7	82	50	0	0	50	1.00
2639134--2639217	26	3.3	25	73	15	82	50	1	2	46	1.22
2639158--2639203	24	1.9	24	90	0	74	47	2	2	47	1.26
2639673--2639737	32	2.2	31	84	13	84	27	0	0	72	0.85
2639748--2639808	26	2.3	27	88	2	88	36	0	3	60	1.13
2643046--2643269	94	2.4	94	88	0	322	26	23	14	35	1.93
2644228--2644356	33	3.8	32	71	19	82	40	1	1	56	1.18
2644261--2644355	38	2.5	38	83	8	115	42	1	1	55	1.13
2644260--2644339	36	2.2	36	84	4	106	40	1	1	57	1.15
2645451--2645498	14	3.6	14	77	5	55	52	0	0	47	1.00
2646160--2646203	21	2.0	22	86	4	63	27	9	2	61	1.38
2648753--2648809	26	2.3	26	81	6	64	49	0	0	50	1.00
2659485--2659516	17	1.9	17	93	6	57	40	0	0	59	0.97
2661678--2661749	23	3.1	23	69	13	58	43	4	0	52	1.20
2661905--2661938	13	2.5	14	90	4	52	58	0	0	41	0.98
2661905--2661973	27	2.5	29	84	13	92	59	0	0	40	0.97
2662163--2662197	13	2.6	14	86	9	54	37	0	0	62	0.95
2662160--2662282	51	2.4	51	74	22	123	44	0	0	55	0.99
2662409--2662519	40	2.6	42	71	20	106	57	0	0	42	0.98
2662403--2662469	34	2.0	34	85	5	91	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2662474--2662511	13	3.0	13	92	3	60	65	0	0	34	0.93
2663923--2663956	2	17.0	2	93	0	59	47	0	0	52	1.00
2664837--2664867	2	15.5	2	100	0	62	48	0	0	51	1.00
2666183--2666227	2	23.0	2	95	4	83	48	0	0	51	1.00
2668497--2668552	21	2.6	21	83	8	60	60	14	1	23	1.43
2669269--2669333	29	2.2	30	86	5	89	53	9	7	29	1.60
2672686--2673124	219	2.0	219	97	0	833	34	17	18	29	1.94
2676734--2676774	21	1.9	22	90	5	66	26	2	2	68	1.15
2677058--2677108	10	5.5	10	80	13	56	60	7	0	31	1.25
2677210--2677246	3	12.3	3	94	0	65	29	2	0	67	1.04
2677638--2677679	2	21.0	2	100	0	84	50	0	0	50	1.00
2678413--2678449	18	2.1	18	100	0	74	59	0	0	40	0.97
2678650--2678700	21	2.4	21	100	0	102	45	0	0	54	0.99
2678650--2678703	11	5.1	11	75	8	58	42	0	0	57	0.98
2682379--2682405	5	5.4	5	100	0	54	81	0	0	18	0.69
2682686--2683155	154	3.0	153	74	4	433	40	18	16	25	1.90
2684583--2684637	25	2.2	24	83	3	65	12	10	1	74	1.15
2684777--2684855	28	2.6	30	76	13	81	69	1	3	25	1.12
2688881--2688925	21	2.1	21	91	0	72	37	20	11	31	1.87
2690828--2690883	24	2.3	24	77	20	62	39	10	3	46	1.56
2696947--2696989	16	2.7	16	82	7	52	55	20	9	13	1.66
2698291--2698316	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2700674--2700720	21	2.3	21	76	23	55	42	4	19	34	1.70
2700841--2700917	20	3.6	20	77	16	73	42	15	15	25	1.86
2702925--2702955	15	2.1	15	93	0	53	12	22	16	48	1.80
2704759--2704803	22	2.1	21	84	8	56	22	17	4	55	1.60
2707021--2707078	13	4.0	13	76	23	62	29	17	15	37	1.90
2708264--2708300	16	2.2	17	86	13	51	51	0	0	48	1.00
2708989--2709024	18	2.0	18	94	0	63	58	0	0	41	0.98
2709042--2709110	31	2.3	30	76	14	70	53	4	2	39	1.36
2710629--2710670	21	2.0	21	90	0	66	40	11	19	28	1.87
2723469--2723570	28	3.6	28	89	2	152	24	31	18	25	1.98
2723554--2723671	51	2.3	51	85	5	166	28	27	12	30	1.93
2723522--2723858	130	2.6	128	74	7	329	27	26	12	33	1.92
2725897--2725927	4	7.8	4	100	0	62	22	0	0	77	0.77

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20

The End!