genome.fa.s206.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold206
Parameters: 2 7 7 80 10 50 1000
Length:  2736418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  5  of  20  ( 2337 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
681891--681936	18	2.5	20	76	16	55	39	2	2	56	1.24
682253--682284	5	6.4	5	96	0	55	34	0	3	62	1.11
683800--683867	29	2.3	30	82	10	86	51	0	0	48	1.00
683795--683866	30	2.4	30	81	11	85	50	0	0	50	1.00
684125--684201	28	2.7	28	84	11	86	33	0	3	62	1.14
685407--685450	21	2.0	22	86	4	63	59	0	0	40	0.98
685406--685452	19	2.5	18	86	13	60	57	0	0	42	0.98
685408--685452	18	2.5	19	82	17	60	57	0	0	42	0.98
685729--685781	17	3.1	18	76	20	51	30	5	0	64	1.17
685871--685902	14	2.4	14	90	10	50	43	0	0	56	0.99
686462--686512	22	2.1	25	86	13	72	52	0	0	47	1.00
693009--693038	6	5.0	6	100	0	60	33	33	16	16	1.92
693233--693281	2	25.0	2	79	4	55	42	4	4	48	1.40
693388--693429	19	2.2	20	80	20	54	38	0	0	61	0.96
695339--695382	20	2.3	18	92	7	70	72	2	0	25	0.96
697333--697380	26	1.9	24	83	8	60	58	0	2	39	1.10
697495--697533	21	1.9	20	84	5	51	46	2	2	48	1.29
697915--697956	22	1.9	22	90	9	68	38	0	0	61	0.96
697994--698023	2	15.0	2	100	0	60	50	0	0	50	1.00
698098--698185	2	45.5	2	78	10	76	52	0	3	44	1.18
698098--698184	31	2.9	30	86	5	104	51	0	3	44	1.18
698102--698187	29	2.9	29	84	5	93	53	0	3	43	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
703531--703562	2	16.0	2	100	0	64	0	50	0	50	1.00
710552--710595	3	14.3	3	90	4	70	65	2	0	31	1.05
711864--711908	17	2.7	17	86	3	65	64	0	0	35	0.94
711875--711911	8	4.2	9	83	16	51	64	0	0	35	0.94
713189--713265	16	4.8	16	77	6	75	42	6	7	42	1.59
713164--713238	32	2.3	32	81	2	87	46	5	6	41	1.53
713211--713283	32	2.3	32	87	0	110	39	5	6	47	1.53
713261--713308	15	3.1	15	90	3	69	47	2	4	45	1.33
713440--713477	12	2.9	13	88	7	51	26	0	2	71	1.00
720482--720533	3	17.7	3	96	4	97	30	0	0	69	0.89
720485--720539	9	6.4	8	95	2	65	29	0	0	70	0.87
724147--724180	13	2.5	14	85	9	52	50	0	0	50	1.00
724316--724376	28	2.1	30	88	11	92	40	0	0	59	0.98
724344--724386	12	3.6	12	84	9	61	41	0	0	58	0.98
724344--724402	22	2.6	23	82	15	61	44	0	0	55	0.99
724344--724394	13	4.1	13	79	20	56	41	0	0	58	0.98
724511--724554	2	22.0	2	100	0	88	50	0	0	50	1.00
724493--724554	10	6.2	10	92	0	70	54	1	0	43	1.09
729133--729169	2	18.5	2	100	0	74	48	0	0	51	1.00
729438--729466	14	2.1	14	100	0	58	58	6	13	20	1.58
731606--731667	18	3.7	18	74	24	71	43	0	0	56	0.99
731618--731669	14	3.4	14	75	17	50	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
732144--732177	4	8.8	4	93	6	61	50	0	0	50	1.00
732295--732347	16	3.3	16	78	0	61	47	3	5	43	1.45
732664--732693	3	10.0	3	100	0	60	66	0	0	33	0.92
733127--733164	20	1.9	20	88	0	58	47	0	5	47	1.24
739288--739339	25	2.1	25	85	0	68	50	0	0	50	1.00
739704--739743	21	2.0	20	90	5	62	47	0	0	52	1.00
739959--740000	22	1.9	22	90	9	68	38	0	0	61	0.96
741014--741082	21	3.1	22	77	22	65	47	1	0	50	1.09
741294--741335	22	1.9	22	90	0	66	57	0	0	42	0.99
742801--742847	2	23.5	2	95	0	85	51	2	0	46	1.13
743076--743124	24	2.0	25	88	4	73	36	2	4	57	1.30
744160--744214	29	2.0	27	82	10	67	50	3	0	45	1.19
744170--744214	14	3.1	15	76	20	51	48	2	0	48	1.13
744738--744799	21	2.9	22	79	15	69	69	0	0	30	0.89
744738--744799	11	5.8	12	76	17	57	69	0	0	30	0.89
744742--744799	27	2.1	27	84	6	73	68	0	0	31	0.89
744758--744796	16	2.5	15	84	12	51	69	0	0	30	0.89
744854--744910	30	1.9	30	86	13	82	49	0	3	47	1.18
745125--745164	21	1.9	21	89	0	62	60	2	10	27	1.42
747698--747737	19	2.1	19	86	9	55	37	0	0	62	0.95
747705--747809	34	3.0	34	77	12	99	50	0	0	49	1.00
748484--748543	29	2.0	30	81	9	70	45	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
748519--748553	15	2.2	16	90	5	54	51	0	0	48	1.00
748808--748846	18	2.2	18	86	4	53	71	0	0	28	0.86
749015--749085	5	14.4	5	75	16	60	56	1	1	40	1.17
749016--749084	2	37.5	2	73	21	53	55	1	1	42	1.18
749016--749084	23	3.0	24	81	16	83	55	1	1	42	1.18
749015--749087	30	2.5	30	84	6	87	56	1	1	41	1.16
749353--749399	17	2.8	17	77	6	51	63	0	0	36	0.94
750508--750547	20	2.0	20	90	4	64	32	5	0	62	1.17
750694--750746	27	2.0	26	85	3	70	52	0	0	47	1.00
754133--754192	19	3.2	17	77	11	57	38	0	1	60	1.07
754209--754248	21	1.9	21	85	10	55	37	2	0	60	1.11
754635--754676	18	2.2	19	83	8	50	57	2	0	40	1.12
756996--757087	26	3.4	27	70	15	75	43	0	1	55	1.07
757014--757054	14	2.9	14	80	20	50	34	0	0	65	0.93
757147--757176	13	2.3	13	94	0	51	20	0	0	80	0.72
757162--757199	17	2.3	17	90	4	60	26	5	0	68	1.11
758736--758779	20	2.3	20	84	7	65	38	2	0	59	1.10
759633--759669	16	2.3	16	90	0	56	48	2	0	48	1.15
759670--759711	17	2.5	17	85	11	59	50	0	0	50	1.00
760075--760113	17	2.3	17	90	0	60	30	0	2	66	1.05
760291--760341	17	3.0	17	75	13	52	60	0	1	37	1.08
760469--760549	29	2.8	28	77	17	76	60	1	1	37	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
770920--770959	15	2.8	14	84	3	53	57	0	0	42	0.98
771330--771399	23	3.0	23	81	10	81	71	1	0	27	0.94
771330--771399	12	5.9	12	76	15	74	71	1	0	27	0.94
774720--774752	2	16.5	2	100	0	66	0	51	0	48	1.00
775341--775392	11	4.6	11	81	11	52	67	1	0	30	1.02
775348--775421	27	2.6	28	80	12	89	63	0	0	36	0.95
775332--775400	17	3.9	17	68	20	52	63	1	0	34	1.03
775657--775716	25	2.3	26	78	13	63	33	1	0	65	1.03
775702--775749	24	2.0	25	92	8	82	50	0	2	47	1.12
776235--776280	20	2.4	20	85	7	60	52	6	4	36	1.47
776467--776536	29	2.4	30	73	4	72	44	18	1	35	1.59
776691--776771	37	2.1	39	82	8	96	39	2	4	53	1.36
779192--779275	3	28.0	3	79	13	57	58	1	0	40	1.06
779902--779948	2	23.5	2	86	0	67	2	46	2	48	1.25
780892--780935	22	2.0	23	82	13	56	50	0	0	50	1.00
782488--782561	35	2.1	34	87	2	103	44	4	2	48	1.35
782544--782575	14	2.3	14	94	0	55	34	0	3	62	1.11
785213--785239	2	13.5	2	100	0	54	51	0	48	0	1.00
785369--785427	17	3.3	18	74	13	59	44	0	0	55	0.99
786105--786146	21	2.0	22	90	4	68	57	0	0	42	0.99
786101--786162	22	2.8	22	80	9	72	48	0	0	51	1.00
786141--786174	10	3.5	10	84	8	52	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
786542--786589	22	2.2	22	81	7	53	37	4	6	52	1.46
787861--787911	22	2.3	21	90	6	75	66	0	3	29	1.09
787861--787903	12	3.8	12	75	12	54	67	0	2	30	1.03
788654--788683	2	15.0	2	92	0	51	46	0	0	53	1.00
788723--788795	31	2.4	31	90	0	110	53	2	4	39	1.34
789975--790020	2	23.0	2	95	0	83	50	2	0	47	1.13
792010--792046	2	18.5	2	100	0	74	0	48	0	51	1.00
792046--792072	2	13.5	2	100	0	54	48	0	0	51	1.00
792245--792272	2	14.0	2	100	0	56	50	0	0	50	1.00
792913--792961	21	2.3	21	83	13	57	36	0	4	59	1.17

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20