genome.fa.s206.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold206
Parameters: 2 7 7 80 10 50 1000
Length:  2736418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  2  of  20  ( 2337 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
226179--226215	19	2.0	18	89	5	56	35	0	0	64	0.94
226181--226212	13	2.3	15	89	10	50	34	0	0	65	0.93
229917--230015	49	2.0	50	96	2	182	33	15	13	38	1.86
240633--240666	2	17.0	2	100	0	68	50	0	0	50	1.00
243286--243313	2	14.0	2	100	0	56	50	0	0	50	1.00
245919--245945	4	6.8	4	100	0	54	74	0	0	25	0.83
245943--245968	2	13.0	2	100	0	52	50	0	0	50	1.00
246310--246338	3	9.7	3	100	0	58	65	0	0	34	0.93
248384--248412	2	15.0	2	92	7	51	48	0	0	51	1.00
250349--250569	34	6.5	33	82	9	266	40	26	7	24	1.82
250351--250569	68	3.2	67	85	3	296	40	26	7	25	1.82
250349--250569	102	2.2	101	89	1	352	40	26	7	24	1.82
254979--255197	34	6.5	33	80	9	244	41	26	7	25	1.81
254979--255197	102	2.2	101	86	1	321	41	26	7	25	1.81
255721--255776	2	28.5	2	96	3	105	50	0	0	50	1.00
256966--257083	34	3.5	33	79	6	128	37	29	3	29	1.74
261834--261947	34	3.3	34	77	2	120	36	30	2	29	1.71
263959--263989	2	15.5	2	100	0	62	48	0	0	51	1.00
267197--267235	20	2.0	20	85	5	53	64	2	0	33	1.08
271232--271270	2	19.5	2	100	0	78	0	0	48	51	1.00
275049--275083	18	1.9	18	88	0	52	45	14	14	25	1.82
275723--275761	18	2.2	18	100	0	78	35	10	10	43	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
277659--277692	17	2.0	17	88	11	52	67	0	0	32	0.91
277613--277686	20	3.8	20	66	15	55	62	2	4	31	1.28
280386--280414	10	3.0	10	95	5	51	48	0	0	51	1.00
282053--282537	256	1.9	253	90	1	772	34	20	11	34	1.88
282656--282709	21	2.8	21	81	16	71	59	0	0	40	0.98
290087--290111	2	12.5	2	100	0	50	0	0	48	52	1.00
296460--296561	55	1.9	51	84	7	132	55	3	17	22	1.58
303569--303623	20	2.8	20	100	0	110	34	14	10	40	1.81
303639--303713	20	3.8	20	76	0	69	38	12	14	34	1.83
303636--303713	40	2.0	39	84	2	102	38	12	14	34	1.84
304290--304871	32	18.2	32	93	1	963	17	18	34	29	1.94
304854--306057	27	44.0	27	90	2	1841	27	14	34	22	1.94
304854--306057	82	14.7	81	90	2	1841	27	14	34	22	1.94
304854--306057	109	11.0	108	90	2	1841	27	14	34	22	1.94
307333--307384	23	2.3	23	83	12	63	5	11	7	75	1.19
307365--307407	15	2.8	16	79	13	54	4	18	11	65	1.42
311590--311631	20	2.1	20	100	0	84	26	28	14	30	1.95
314496--314570	20	3.8	20	76	0	69	38	12	14	34	1.83
314493--314570	40	2.0	39	84	2	102	38	12	14	34	1.84
320082--320116	17	2.1	17	100	0	70	34	20	5	40	1.76
322420--322471	22	2.4	21	81	12	61	46	0	1	51	1.12
323727--323765	14	2.8	14	84	11	53	69	0	0	30	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324094--324147	27	2.0	26	86	10	74	51	3	0	44	1.19
324242--324323	3	26.7	3	85	9	103	34	0	3	62	1.13
324336--324376	19	2.2	19	90	0	64	56	0	2	41	1.13
324365--324417	18	2.8	18	82	5	52	45	0	0	54	0.99
324470--324502	13	2.4	14	90	10	59	48	0	0	51	1.00
324474--324503	13	2.3	13	100	0	60	50	0	0	50	1.00
324498--324535	17	2.2	18	80	9	51	39	7	0	52	1.31
324658--324694	20	1.9	18	89	10	56	59	0	0	40	0.97
324826--324878	23	2.3	22	78	9	61	50	0	0	49	1.00
324823--324913	34	2.8	33	83	15	120	47	0	0	52	1.00
324866--324912	13	3.4	13	83	16	67	38	0	0	61	0.96
324857--324912	13	3.9	15	80	17	66	44	0	0	55	0.99
324854--324916	29	2.2	29	88	2	101	47	0	0	52	1.00
326964--327006	21	2.0	21	95	0	77	34	0	4	60	1.17
327692--327729	2	19.0	2	100	0	76	50	0	0	50	1.00
330214--330258	2	22.5	2	90	0	72	48	2	2	46	1.26
336609--336666	14	4.0	14	75	16	55	58	0	1	39	1.08
343328--343392	22	3.0	22	88	0	94	35	3	21	40	1.69
343334--343413	22	3.8	21	80	6	74	40	3	13	42	1.62
345886--345915	15	2.0	15	100	0	60	53	0	0	46	1.00
346059--346098	2	20.0	2	94	0	71	47	0	2	50	1.14
347459--347722	132	2.0	132	96	0	483	36	22	15	25	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349086--349127	2	21.5	2	90	4	68	50	0	2	47	1.14
349248--349297	26	2.0	25	84	4	64	46	2	0	52	1.12
349515--349545	2	15.5	2	100	0	62	48	0	0	51	1.00
350395--350431	2	18.5	2	88	0	56	48	2	0	48	1.15
351910--351940	2	15.5	2	100	0	62	48	0	0	51	1.00
352742--352772	2	15.5	2	100	0	62	48	0	0	51	1.00
355484--355527	22	2.0	22	86	4	63	54	0	2	43	1.12
356098--356153	16	3.4	16	73	20	53	42	0	1	55	1.10
356168--356222	24	2.3	22	77	17	56	34	5	0	60	1.20
362046--362081	2	18.0	2	100	0	72	50	0	0	50	1.00
362727--362757	2	15.5	2	93	0	53	48	0	3	48	1.17
363625--363663	16	2.6	15	84	8	53	46	2	0	51	1.14
370351--370381	9	3.3	9	91	8	53	22	0	0	77	0.77
375114--375143	15	2.0	15	93	0	51	36	0	0	63	0.95
376208--376266	26	2.3	26	82	8	75	45	6	0	47	1.29
380207--380288	2	41.5	2	78	16	57	51	2	3	42	1.32
380209--380285	29	2.6	29	89	2	118	50	2	3	42	1.34
382734--382767	2	17.0	2	87	0	50	47	2	2	47	1.32
383527--383558	2	16.0	2	100	0	64	50	0	0	50	1.00
384210--384240	3	10.3	3	100	0	62	67	32	0	0	0.91
386296--386350	21	2.8	19	75	24	60	61	0	0	38	0.96
390034--390063	13	2.3	13	94	0	51	33	0	3	63	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
394061--394102	11	3.8	11	78	12	50	54	2	0	42	1.13
394471--394511	19	2.3	19	84	16	52	63	0	0	36	0.95
394470--394539	24	3.0	24	79	6	72	58	0	0	41	0.98
394475--394569	40	2.3	40	79	13	106	58	1	0	40	1.05
394494--394562	30	2.2	32	87	7	97	56	1	0	42	1.08
395032--395073	16	2.6	16	84	0	57	33	0	4	61	1.17
403944--404031	27	3.3	27	64	12	65	45	3	2	48	1.31
406938--406968	16	1.9	16	93	0	53	61	0	0	38	0.96
409848--409991	54	2.7	54	81	2	164	27	20	16	35	1.94
409896--410097	54	3.7	55	77	12	186	27	14	19	38	1.91
415999--416035	7	5.1	7	90	6	56	32	0	0	67	0.91
416868--416901	2	17.0	2	100	0	68	50	0	0	50	1.00
416941--417019	23	3.5	23	70	3	79	53	5	2	39	1.37
416940--417030	45	2.0	45	100	0	182	50	6	5	37	1.52
417289--417319	15	2.0	16	93	6	55	54	0	0	45	0.99
419676--419715	5	7.4	5	91	8	53	25	0	0	75	0.81
419682--419718	16	2.2	17	90	4	58	24	0	0	75	0.80
420232--420319	40	2.2	39	84	9	115	43	13	20	22	1.87
420686--420753	19	3.4	19	73	13	64	47	0	0	52	1.00
422105--422152	25	1.9	25	84	16	64	35	2	0	62	1.07
423137--423183	21	2.2	22	88	3	69	40	0	0	59	0.97
423152--423194	14	3.1	14	82	0	59	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
424771--424801	15	2.0	16	93	6	55	29	32	6	32	1.83
436997--437045	21	2.3	21	79	6	55	63	2	2	32	1.17
438164--438208	22	2.0	23	86	4	65	35	4	2	57	1.31
438169--438218	23	2.2	22	82	3	55	36	4	2	58	1.29
441156--441202	24	2.0	24	83	8	60	34	8	0	57	1.29
441170--441227	24	2.5	23	83	8	64	36	3	0	60	1.14
441195--441247	21	2.5	20	80	14	63	39	0	0	60	0.97
441190--441242	26	2.0	26	81	7	61	41	0	0	58	0.98
441916--441945	2	15.0	2	92	0	51	46	3	0	50	1.18
442012--442068	5	11.2	5	75	17	55	61	0	0	38	0.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20