genome.fa.s206.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold206
Parameters: 2 7 7 80 10 50 1000
Length:  2736418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  14  of  20  ( 2337 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1742777--1742827	21	2.4	21	81	15	68	41	0	15	43	1.47
1748826--1748854	15	1.9	15	100	0	58	44	0	6	48	1.29
1754352--1754378	13	2.1	13	100	0	54	29	14	14	40	1.86
1760621--1760646	13	2.0	13	100	0	52	30	15	15	38	1.88
1763082--1763144	32	1.9	33	87	3	92	31	15	15	36	1.90
1763215--1763263	12	4.3	12	73	21	52	28	12	18	40	1.86
1763195--1763263	32	2.1	33	89	7	106	28	13	18	39	1.88
1769167--1769316	81	1.9	81	97	0	282	30	15	16	37	1.90
1769966--1770157	97	2.0	97	86	4	271	44	6	13	35	1.70
1770423--1770474	18	2.9	18	75	11	61	69	15	0	15	1.20
1771330--1771514	34	5.5	34	87	3	257	40	26	7	25	1.82
1771330--1771514	102	1.8	101	92	1	316	40	26	7	25	1.82
1775580--1775623	19	2.3	19	92	0	70	34	20	18	27	1.96
1775925--1776107	34	5.4	34	88	3	262	39	27	7	25	1.82
1775925--1776107	102	1.8	101	93	1	321	39	27	7	25	1.82
1778994--1779033	19	2.2	18	86	4	53	40	10	2	47	1.50
1779795--1779833	19	2.0	20	85	5	53	58	0	2	38	1.12
1781951--1781977	14	1.9	14	100	0	54	37	0	7	55	1.28
1782193--1782255	30	2.0	32	90	6	103	41	0	3	55	1.16
1782826--1782867	22	1.9	22	90	9	68	40	0	0	59	0.97
1783840--1783880	20	2.0	20	85	4	55	34	7	2	56	1.40
1784133--1784226	32	2.8	33	77	8	91	41	0	1	57	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1784177--1784217	21	1.9	21	90	5	64	39	0	0	60	0.96
1784133--1784242	16	7.4	16	69	26	57	41	0	0	57	1.05
1784197--1784263	18	4.2	16	73	19	59	44	0	0	55	0.99
1784543--1784580	20	1.9	20	84	10	51	60	2	2	34	1.24
1789528--1789553	13	2.0	13	100	0	52	38	15	15	30	1.88
1789596--1789635	20	2.0	20	95	4	73	45	15	10	30	1.78
1791768--1791812	21	2.1	21	84	8	56	53	4	20	22	1.63
1793616--1793646	15	2.1	15	93	0	53	48	16	22	12	1.80
1795709--1795747	13	3.0	13	96	0	69	30	17	15	35	1.91
1795870--1795912	20	2.2	19	84	16	52	30	20	4	44	1.72
1797535--1797560	12	2.2	12	100	0	52	42	0	7	50	1.31
1797664--1797723	21	3.2	21	67	30	62	36	1	18	43	1.60
1797685--1797711	14	1.9	14	100	0	54	33	0	7	59	1.25
1798339--1798364	13	2.0	13	100	0	52	38	15	15	30	1.88
1807149--1807219	27	2.5	28	78	13	83	59	4	0	36	1.17
1807199--1807243	23	1.9	24	90	4	74	62	0	2	35	1.08
1807176--1807233	15	3.9	15	72	17	57	60	1	0	37	1.07
1807147--1807247	28	3.6	28	74	16	93	59	2	0	36	1.19
1807177--1807245	23	3.2	20	82	14	66	60	1	1	36	1.14
1807804--1807834	14	2.2	14	94	0	53	41	9	3	45	1.53
1808657--1808695	16	2.5	16	87	4	53	41	0	0	58	0.98
1809569--1809598	14	2.1	14	100	0	60	60	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1811696--1811722	13	2.1	13	100	0	54	44	14	25	14	1.84
1818572--1818691	51	2.4	51	78	0	132	33	14	25	26	1.94
1818756--1819328	51	10.9	52	68	9	279	31	12	27	28	1.92
1818939--1819007	28	2.5	28	87	0	93	24	18	33	23	1.97
1818572--1819125	262	2.1	261	91	2	905	31	12	27	28	1.93
1818813--1819331	210	2.5	211	91	1	857	31	12	27	28	1.93
1821738--1821789	13	3.5	13	73	26	50	36	17	13	32	1.89
1821746--1821808	19	3.7	18	76	24	73	36	17	12	33	1.88
1821738--1821810	32	2.3	32	97	0	137	35	17	12	34	1.88
1821870--1821944	21	3.6	21	100	0	150	37	18	9	34	1.83
1827678--1827956	28	10.1	28	84	10	351	30	30	19	20	1.97
1827678--1827956	56	5.0	56	90	3	415	30	30	19	20	1.97
1827679--1828002	28	11.6	27	82	10	318	31	30	18	19	1.96
1827715--1827986	56	4.9	54	90	3	368	30	29	20	18	1.97
1828024--1828109	43	2.0	43	90	0	136	25	25	18	30	1.98
1828019--1828516	52	10.0	49	79	7	332	25	25	15	33	1.95
1828064--1828351	153	1.9	150	88	3	434	24	26	15	33	1.95
1828019--1828408	101	3.9	98	78	7	364	25	26	16	32	1.96
1828019--1828508	153	3.3	149	76	11	416	25	25	15	33	1.95
1830097--1830142	21	2.2	20	82	14	58	21	15	19	43	1.87
1843109--1843158	15	3.6	14	82	12	59	80	10	10	0	0.92
1843139--1843242	10	10.9	9	74	19	70	81	14	2	0	0.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1843108--1843208	41	2.4	42	83	9	118	79	13	5	0	0.97
1843136--1843242	22	5.0	21	73	10	92	81	14	2	0	0.86
1843108--1843242	14	9.4	14	72	18	100	80	13	5	0	0.94
1843154--1843222	31	2.2	30	72	12	50	81	15	1	1	0.84
1843101--1843218	41	2.7	43	77	12	116	78	15	5	0	0.96
1843143--1843242	41	2.4	41	83	5	112	82	14	3	1	0.85
1844678--1845050	28	13.3	29	82	10	433	31	30	19	18	1.96
1844671--1845050	55	6.8	55	87	5	436	31	30	18	19	1.96
1844670--1845051	140	2.7	138	86	5	520	31	30	18	19	1.96
1845072--1845205	49	3.0	42	78	14	151	26	26	17	30	1.97
1845113--1845563	52	8.9	49	79	5	341	24	25	16	33	1.95
1845113--1845573	153	3.0	151	80	6	493	24	25	16	34	1.95
1846214--1846239	13	2.0	13	100	0	52	38	15	15	30	1.88
1850026--1850074	22	2.2	22	100	0	98	67	8	8	16	1.40
1850996--1851070	20	3.8	20	76	0	69	41	12	12	34	1.79
1852533--1852647	56	2.0	57	98	1	223	44	13	15	26	1.84
1854597--1854636	21	1.9	21	89	0	62	22	25	20	32	1.98
1854700--1854752	20	2.6	20	82	11	63	49	9	9	32	1.67
1856677--1856719	10	3.7	11	84	15	52	37	9	2	51	1.47
1867272--1867785	61	8.4	61	85	3	651	27	24	17	29	1.98
1867272--1867785	182	2.8	182	87	3	710	27	24	17	29	1.98
1867883--1867956	34	2.2	34	90	0	112	17	27	17	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1870731--1870755	13	1.9	13	100	0	50	76	8	0	16	1.02
1870742--1870792	21	2.5	21	81	9	61	78	9	1	9	1.04
1871525--1871616	30	3.4	30	68	27	96	23	18	18	39	1.92
1871503--1871616	50	2.3	50	95	0	201	24	17	16	41	1.90
1871640--1871671	14	2.3	14	94	0	55	25	9	28	37	1.87
1875103--1875233	52	2.5	52	91	0	208	21	19	18	40	1.92
1875103--1875275	52	3.3	52	86	1	204	23	19	17	39	1.92
1875668--1875811	58	2.5	57	85	6	182	28	29	20	22	1.98
1876039--1876371	104	3.2	104	82	4	406	27	26	13	33	1.93
1876022--1876380	156	2.3	155	80	6	386	26	25	13	34	1.93
1875974--1876380	52	7.8	52	77	8	310	26	24	13	35	1.93
1880173--1880287	58	2.0	58	86	3	160	26	29	12	31	1.92
1880173--1880339	58	2.9	58	80	5	142	26	27	13	32	1.93
1881184--1881255	21	3.5	21	92	1	101	41	9	15	33	1.80
1881294--1881513	51	4.3	51	85	3	309	30	15	13	41	1.85
1881294--1881519	102	2.2	103	92	3	368	29	15	12	41	1.85
1889816--1889867	21	2.5	21	81	9	63	38	17	17	26	1.92
1897935--1897981	22	2.1	22	92	7	78	34	0	31	34	1.58
1898659--1898684	13	2.0	13	100	0	52	38	15	15	30	1.88
1910933--1910982	26	1.9	26	83	0	64	40	20	2	38	1.64
1912276--1912850	79	7.3	79	81	2	604	29	25	13	32	1.93
1912276--1912848	157	3.6	157	82	5	629	29	24	13	32	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1912284--1912823	236	2.3	235	86	1	740	29	25	13	32	1.93
1914917--1914946	4	7.5	4	92	0	51	23	3	0	73	0.98
1917863--1917910	25	1.9	25	100	0	96	18	22	29	29	1.98
1919994--1920412	219	1.9	219	92	1	707	29	24	17	28	1.97
1926530--1926736	61	3.4	60	82	3	252	27	24	17	30	1.97
1926850--1926889	21	1.9	21	84	0	53	15	35	15	35	1.88
1926945--1926980	15	2.3	16	95	4	65	52	25	16	5	1.65
1926944--1926981	16	2.4	17	86	13	62	55	23	15	5	1.61
1928866--1929515	79	8.2	78	84	3	662	29	22	13	34	1.92
1928853--1929515	237	2.8	234	83	6	816	29	22	12	35	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20