genome.fa.s206.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold206
Parameters: 2 7 7 80 10 50 1000
Length:  2736418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  7  of  20  ( 2337 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
885679--885762	32	2.6	33	76	10	84	34	0	3	61	1.13
885745--885781	19	2.0	19	89	5	58	21	0	5	72	1.04
887622--887646	12	2.1	12	100	0	50	52	0	0	48	1.00
891099--891290	95	2.0	95	95	0	348	26	20	9	43	1.83
894144--894189	2	23.5	2	84	4	58	43	2	4	50	1.34
894363--894398	18	2.1	18	89	5	56	22	2	0	75	0.94
896333--896378	11	4.1	12	80	8	53	58	2	8	30	1.40
896991--897041	23	2.2	23	92	0	84	52	1	1	43	1.23
897769--897832	22	2.9	21	79	9	74	51	1	1	45	1.20
897769--897849	9	9.0	9	74	15	69	50	2	1	45	1.22
898952--898986	17	2.0	18	94	5	63	28	2	0	68	1.04
898952--898986	18	2.0	17	88	5	52	28	2	0	68	1.04
899062--899117	12	4.8	12	77	14	64	64	1	1	32	1.14
899417--899462	17	2.6	18	82	10	58	63	4	0	32	1.14
899386--899448	9	7.0	9	73	18	51	60	1	1	36	1.16
899417--899463	18	2.6	17	86	6	58	61	4	0	34	1.15
899628--899678	20	2.7	18	80	19	59	43	0	0	56	0.99
899665--899709	22	2.0	22	83	8	56	55	0	0	44	0.99
907703--907744	22	1.9	22	90	9	68	38	0	0	61	0.96
913087--913114	14	2.0	14	100	0	56	35	0	0	64	0.94
913088--913129	22	1.9	22	90	9	68	35	0	0	64	0.94
913606--913652	17	2.9	16	75	15	51	38	0	0	61	0.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
914814--914847	12	2.8	12	86	0	50	47	0	0	52	1.00
916619--916669	17	2.8	18	82	8	59	35	1	3	58	1.28
916994--917099	53	2.0	53	85	3	142	46	9	4	39	1.57
917150--917198	16	3.1	16	74	11	55	55	2	0	42	1.11
917683--917742	27	2.2	26	82	8	75	60	0	0	40	0.97
917981--918028	23	2.0	24	84	4	62	39	2	0	58	1.10
918271--918313	14	2.8	16	80	20	56	60	0	0	39	0.97
918271--918312	15	2.9	15	82	13	52	59	0	0	40	0.97
920832--920898	27	2.5	26	78	9	73	59	1	1	37	1.16
923463--923501	18	2.1	19	90	4	62	69	0	2	28	1.02
923471--923507	15	2.5	16	83	16	53	72	0	0	27	0.84
924812--924844	12	2.5	13	90	9	50	78	0	0	21	0.75
925501--925539	19	2.0	20	85	5	53	38	0	5	56	1.22
925539--925580	20	2.2	20	86	4	59	69	0	2	28	1.01
925644--925714	27	2.6	28	78	15	85	63	0	1	35	1.03
925651--925702	17	3.1	18	78	13	65	67	0	1	30	1.02
925651--925708	16	3.5	17	77	17	61	65	0	1	32	1.03
927735--927772	2	19.0	2	100	0	76	50	0	0	50	1.00
931876--931912	3	12.3	3	100	0	74	67	0	0	32	0.91
934958--934982	2	12.5	2	100	0	50	52	0	0	48	1.00
938332--938385	16	3.4	16	76	0	63	11	22	33	33	1.89
938532--938573	19	2.2	19	83	8	50	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
938598--938637	18	2.2	18	86	8	55	50	2	2	45	1.28
938790--938837	24	2.0	24	84	4	62	54	4	2	39	1.32
939808--939865	16	3.7	15	86	4	62	3	20	32	43	1.69
939810--939898	33	2.8	32	77	13	92	3	19	31	46	1.66
939875--939919	16	2.8	16	82	0	54	4	20	35	40	1.72
942872--942948	35	2.2	36	78	17	92	48	1	0	50	1.09
946498--946557	25	2.3	27	82	8	79	58	0	0	41	0.98
947163--947224	17	3.5	17	78	8	54	53	0	0	46	1.00
947535--947588	26	2.0	27	82	13	67	51	0	5	42	1.25
947936--947979	24	1.9	24	86	9	65	70	4	0	25	1.06
947944--947996	24	2.2	24	82	0	61	67	3	0	28	1.07
948541--948590	10	5.4	9	75	20	50	72	2	2	24	1.06
948537--948589	27	2.0	26	85	10	72	71	1	1	24	1.06
949055--949083	11	2.5	12	94	5	51	0	10	0	89	0.48
949180--949310	66	2.0	67	92	4	221	45	8	2	43	1.46
953653--953778	63	2.0	63	93	0	216	18	23	19	38	1.93
954864--954946	29	2.8	29	80	10	87	55	1	0	43	1.07
954823--954901	41	1.9	40	82	10	97	53	0	0	46	1.00
954812--954906	35	2.7	36	71	10	88	53	0	0	46	1.00
955167--955224	21	2.9	20	76	14	57	53	0	0	46	1.00
956991--957015	2	12.5	2	100	0	50	52	0	0	48	1.00
957233--957261	15	1.9	15	100	0	58	48	0	3	48	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
957738--957787	19	2.5	20	84	12	68	34	0	2	64	1.05
957792--957822	16	1.9	16	93	0	53	64	0	0	35	0.94
958345--958427	36	2.2	39	80	6	91	42	0	1	56	1.07
958334--958443	36	3.2	34	70	20	86	46	0	0	52	1.06
958421--958479	18	3.4	17	76	23	52	45	0	0	54	0.99
962075--962117	22	1.9	22	85	4	59	58	0	0	41	0.98
963111--963152	18	2.3	18	88	8	59	28	0	11	59	1.33
966213--966303	26	3.5	24	71	10	65	18	5	7	68	1.34
966964--967000	18	2.0	19	89	5	58	48	0	2	48	1.15
968429--968475	9	5.2	9	75	10	51	40	2	0	57	1.11
968483--968519	18	2.1	18	90	10	58	32	2	5	59	1.34
968429--968507	36	2.2	36	82	13	92	37	2	2	56	1.26
968501--968627	35	3.6	34	68	15	94	39	3	1	55	1.25
968911--968945	18	1.9	18	88	0	52	42	0	2	54	1.15
970942--970977	2	18.0	2	100	0	72	50	0	0	50	1.00
971354--971417	23	2.8	22	76	4	56	43	1	3	51	1.26
972471--972609	70	1.9	72	86	5	201	50	10	4	35	1.56
974364--974395	13	2.3	15	89	10	50	56	0	0	43	0.99
975205--975246	22	1.9	22	85	9	59	59	0	2	38	1.10
977845--977925	37	2.2	37	88	4	119	41	11	4	41	1.62
978912--978946	16	2.2	16	90	5	54	48	0	0	51	1.00
978913--978961	23	2.0	25	84	7	66	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
979243--979293	27	2.0	25	84	7	66	35	0	3	60	1.15
979286--979334	2	26.0	2	80	12	59	55	0	0	44	0.99
980431--980475	21	2.1	22	83	4	56	57	2	0	40	1.11
984392--984534	77	1.9	76	95	1	259	25	18	32	23	1.97
985310--985407	36	2.7	36	79	6	99	58	2	2	37	1.21
986686--986817	51	2.6	51	90	0	210	22	24	10	42	1.85
986979--987069	38	2.5	39	80	10	111	48	1	0	50	1.08
987290--987352	20	3.2	19	73	18	56	52	1	3	42	1.27
987588--987624	18	2.1	18	89	0	56	54	0	2	43	1.14
988068--988123	23	2.4	24	76	11	62	48	0	0	51	1.00
988916--988967	22	2.3	23	83	9	63	36	1	0	61	1.07
989112--989169	23	2.5	23	81	13	66	36	13	3	46	1.61
989295--989337	22	2.0	22	90	0	68	46	6	6	39	1.58
990912--990951	8	4.7	9	82	17	50	47	0	0	52	1.00
990945--990994	21	2.5	21	87	6	68	54	2	0	44	1.11
991322--991376	20	2.7	20	76	13	58	40	0	1	58	1.09
991569--991630	21	2.9	22	74	13	56	48	1	0	50	1.10
993674--993719	19	2.4	19	85	7	58	60	0	0	39	0.97
993697--993726	13	2.2	14	94	5	53	50	0	0	50	1.00
993704--993746	22	2.0	21	86	4	59	46	2	0	51	1.13
994488--994534	18	2.6	17	83	9	58	51	0	4	44	1.21
994740--994808	20	3.2	20	71	26	61	50	2	0	46	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
994775--994810	18	1.9	19	88	5	56	50	2	0	47	1.15
994940--994968	14	2.0	15	93	6	51	65	0	0	34	0.93
995252--995316	29	2.2	29	81	10	80	49	1	0	49	1.10
995750--995803	27	2.0	27	85	7	74	48	0	0	51	1.00
996120--996177	24	2.4	24	80	5	64	24	5	0	70	1.07
999418--999482	32	2.0	32	96	0	121	27	12	10	49	1.73
1001391--1001489	33	3.0	33	92	0	153	49	2	14	34	1.54
1001590--1001639	17	2.8	18	84	6	57	54	0	4	42	1.19
1002811--1002840	2	15.0	2	100	0	60	50	0	0	50	1.00
1006054--1006109	17	3.2	18	80	14	64	66	0	1	32	1.03

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20