genome.fa.s206.2.7.7.80.10.50.1000.13.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold206
Parameters: 2 7 7 80 10 50 1000
Length:  2736418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  13  of  20  ( 2337 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1593183--1593221	20	2.0	20	94	0	69	58	5	7	28	1.47
1594041--1594091	22	2.3	22	79	3	57	45	1	9	43	1.48
1594861--1594898	17	2.1	19	85	9	53	52	0	2	44	1.14
1597342--1597398	22	2.7	21	75	5	62	52	1	0	45	1.11
1598073--1598141	29	2.4	29	83	9	81	53	8	11	26	1.65
1599821--1599847	2	13.5	2	100	0	54	51	0	0	48	1.00
1602211--1602252	20	2.1	20	100	0	84	54	4	4	35	1.42
1602672--1602700	14	2.0	15	93	6	51	48	0	0	51	1.00
1603972--1604055	32	2.6	31	80	12	82	54	1	1	42	1.15
1604103--1604145	6	7.2	6	97	0	77	18	0	65	16	1.28
1608169--1608199	11	2.7	11	95	5	53	54	6	0	38	1.26
1611369--1611438	29	2.4	30	87	2	106	30	22	7	40	1.81
1612428--1612496	34	2.0	34	100	0	138	20	42	11	26	1.86
1615012--1615051	14	2.9	14	82	10	55	42	0	0	57	0.98
1615682--1615885	101	2.0	101	92	0	336	30	26	10	32	1.90
1616651--1616715	33	2.0	33	87	6	96	32	15	15	36	1.89
1616920--1616971	21	2.4	22	84	9	63	46	11	5	36	1.64
1617884--1617926	22	2.0	22	90	0	68	53	2	0	44	1.13
1618411--1618435	13	1.9	13	100	0	50	36	16	16	32	1.90
1618424--1618476	20	2.7	19	80	11	63	32	15	13	39	1.85
1624832--1624870	18	2.2	18	100	0	78	10	17	12	58	1.61
1624976--1625046	32	2.2	33	89	2	108	36	11	5	46	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1625660--1625717	20	2.8	20	92	2	89	29	15	12	43	1.83
1636427--1636470	23	1.9	23	90	0	70	36	0	2	61	1.09
1636469--1636525	19	3.0	20	75	17	50	52	3	0	43	1.18
1637173--1637209	16	2.3	16	95	0	65	45	0	0	54	1.00
1638813--1638843	2	16.0	2	93	6	55	48	0	0	51	1.00
1648141--1648204	32	2.0	32	100	0	128	50	12	9	28	1.71
1648961--1649020	15	3.8	15	77	12	66	51	0	0	48	1.00
1648961--1648996	16	2.3	15	90	4	54	52	0	0	47	1.00
1648967--1649051	17	4.8	19	74	20	69	49	0	0	50	1.00
1648961--1649058	48	2.0	48	80	7	110	51	0	0	48	1.00
1649878--1649911	12	2.9	12	91	4	52	73	0	0	26	0.83
1650111--1650156	19	2.4	19	96	0	83	71	2	0	26	0.97
1653122--1653154	16	2.0	17	88	5	50	39	3	0	57	1.14
1654472--1654501	6	5.0	6	91	0	51	53	0	0	46	1.00
1654811--1654857	3	15.7	3	80	8	51	74	2	0	23	0.93
1654807--1654851	14	3.0	15	84	9	56	77	2	0	20	0.87
1654811--1654859	21	2.3	21	89	6	73	75	2	0	22	0.90
1654782--1654851	15	4.9	14	77	17	65	77	4	1	17	1.01
1655736--1655840	54	1.9	53	84	7	140	24	38	20	17	1.93
1656608--1656662	27	2.0	27	82	6	67	52	3	18	25	1.61
1658418--1658521	30	3.5	30	76	8	90	52	2	1	42	1.27
1659447--1659502	11	5.3	11	76	8	53	69	0	1	28	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1659451--1659580	9	13.7	10	71	23	79	60	0	1	37	1.06
1659454--1659570	8	13.8	8	70	19	69	60	0	0	38	1.03
1659440--1659579	55	2.5	56	78	9	142	61	0	1	37	1.05
1659462--1659570	28	3.9	28	82	10	125	59	0	0	39	1.04
1659496--1659578	22	3.6	22	80	12	71	57	0	1	40	1.06
1659496--1659617	48	2.5	49	74	17	110	56	0	0	41	1.10
1659882--1659962	36	2.2	35	79	12	83	39	0	1	59	1.05
1662619--1662651	2	16.5	2	100	0	66	51	0	0	48	1.00
1662701--1662725	13	1.9	13	100	0	50	32	0	0	68	0.90
1663221--1663263	15	2.6	17	85	10	63	58	0	0	41	0.98
1663646--1663698	23	2.3	23	71	12	54	62	9	7	20	1.50
1664474--1664586	59	1.9	59	83	5	149	49	7	12	30	1.67
1665319--1665377	8	6.9	8	83	11	55	0	16	0	83	0.66
1665321--1665377	12	4.4	14	88	8	61	0	17	0	82	0.67
1665319--1665379	20	2.8	22	82	14	81	0	18	0	81	0.68
1665620--1665672	27	1.9	28	84	3	72	56	0	0	43	0.99
1665646--1665692	22	2.1	23	84	11	62	55	0	0	44	0.99
1665912--1665947	2	18.5	2	94	5	65	50	0	0	50	1.00
1666371--1666409	20	2.0	20	85	10	53	53	0	0	46	1.00
1666375--1666434	29	2.1	27	85	14	77	51	0	0	48	1.00
1666390--1666442	14	3.7	15	75	14	58	56	0	0	43	0.99
1666473--1666520	18	2.8	17	82	17	64	39	0	0	60	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1666524--1666560	18	2.1	18	94	0	65	56	0	0	43	0.99
1667099--1667135	17	2.1	17	90	5	56	0	16	0	83	0.64
1676094--1676136	19	2.2	20	88	12	63	65	0	0	34	0.93
1676094--1676141	21	2.3	20	82	7	60	66	0	0	33	0.92
1676092--1676138	18	2.5	19	78	18	53	63	0	0	36	0.94
1676572--1676601	2	15.0	2	100	0	60	50	0	50	0	1.00
1677493--1677538	21	2.4	19	85	10	58	52	6	0	41	1.27
1678742--1678858	33	3.5	35	79	12	120	41	2	0	56	1.13
1679355--1679398	18	2.5	17	78	7	52	47	13	2	36	1.56
1682685--1682734	23	2.2	23	85	0	64	46	6	10	38	1.62
1685459--1685497	21	1.9	21	85	15	55	61	0	0	38	0.96
1685854--1685893	20	2.0	20	85	9	55	60	0	0	40	0.97
1685872--1685950	30	2.7	30	74	5	81	50	0	0	49	1.00
1687117--1687151	2	17.5	2	87	0	52	2	2	45	48	1.32
1691627--1691658	3	10.7	3	100	0	64	34	0	0	65	0.93
1693096--1693121	1	26.0	1	100	0	52	100	0	0	0	0.00
1698880--1698940	3	20.3	3	96	0	113	34	1	0	63	1.04
1700230--1700261	11	2.9	11	95	0	55	31	0	0	68	0.90
1700346--1700383	2	19.0	2	100	0	76	50	0	0	50	1.00
1700656--1700712	29	2.0	29	82	6	71	64	7	3	24	1.34
1701070--1701117	24	2.0	24	91	0	78	12	50	12	25	1.75
1702804--1702850	20	2.3	22	85	10	64	36	0	0	63	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1702784--1702861	34	2.3	35	84	4	104	38	1	1	58	1.14
1702809--1702866	14	3.3	18	68	24	52	37	0	0	62	0.96
1704288--1704423	44	3.2	43	73	18	124	50	0	0	49	1.06
1704297--1704351	20	2.8	20	83	8	76	41	0	0	58	0.98
1704315--1704362	20	2.4	19	80	10	51	50	0	0	50	1.00
1704360--1704468	16	6.8	16	79	9	114	55	1	0	42	1.10
1704303--1704425	39	3.0	41	77	17	114	52	0	0	47	1.06
1704367--1704470	50	2.1	47	86	8	138	54	1	0	43	1.11
1704598--1704643	13	3.7	13	78	16	53	60	2	0	36	1.09
1707364--1707388	2	12.5	2	100	0	50	0	48	0	52	1.00
1707646--1707679	15	2.3	15	90	10	52	38	0	0	61	0.96
1708372--1708464	47	2.0	47	82	4	116	33	13	7	45	1.72
1712428--1712581	72	2.1	72	86	2	211	22	32	22	23	1.98
1712522--1712635	60	1.9	60	82	10	144	21	28	26	23	1.99
1712443--1712696	132	1.9	132	84	6	336	20	31	24	23	1.98
1715992--1716056	19	2.9	23	76	21	75	40	0	0	60	0.97
1715993--1716053	20	3.1	21	69	21	51	39	0	0	60	0.97
1715993--1716052	18	3.2	18	79	9	66	38	0	0	61	0.96
1717156--1717238	39	2.1	39	79	0	94	40	4	1	53	1.30
1717934--1717962	14	2.0	15	93	6	51	41	13	6	37	1.72
1721521--1721757	117	2.0	117	93	0	402	36	22	15	25	1.94
1721912--1722227	159	2.0	159	99	0	623	35	22	12	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1723757--1723792	18	1.9	19	88	5	56	61	5	2	30	1.33
1726618--1726657	3	13.3	3	100	0	80	67	0	0	32	0.91
1726622--1726676	21	2.9	19	86	10	69	65	1	0	32	1.03
1726938--1727027	45	2.0	45	80	8	103	63	5	0	31	1.17
1729192--1729232	19	2.2	19	86	8	57	68	0	14	17	1.22
1733155--1733208	20	2.7	20	94	2	90	33	18	11	37	1.86
1738403--1738433	13	2.4	13	88	0	53	35	12	16	35	1.87
1738386--1738448	33	1.9	33	90	6	101	34	19	12	33	1.89
1738476--1738534	20	3.0	20	80	7	77	32	16	15	35	1.90
1738478--1738530	19	2.7	20	88	2	72	35	18	15	30	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20