genome.fa.s206.2.7.7.80.10.50.1000.11.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold206
Parameters: 2 7 7 80 10 50 1000
Length:  2736418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  11  of  20  ( 2337 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1385900--1385938	15	2.5	15	88	12	53	58	0	0	41	0.98
1385900--1385956	20	2.7	21	81	13	73	56	1	0	42	1.10
1386543--1386591	26	1.9	25	88	12	73	44	0	6	48	1.27
1386932--1386978	22	2.1	22	92	0	76	29	4	12	53	1.58
1388565--1388598	13	2.5	13	95	4	59	70	0	0	29	0.87
1388891--1388915	13	1.9	13	100	0	50	28	0	0	72	0.86
1389486--1389517	14	2.4	13	94	5	55	53	0	0	46	1.00
1390146--1390215	26	2.8	24	80	10	68	54	0	0	45	0.99
1390297--1390350	24	2.2	24	83	6	65	55	0	0	44	0.99
1391917--1391974	23	2.4	25	80	11	66	50	0	0	50	1.00
1391929--1391985	23	2.4	23	80	8	62	47	0	0	52	1.00
1392210--1392234	12	2.1	12	100	0	50	40	0	0	60	0.97
1392211--1392266	22	2.5	23	83	11	64	35	0	3	60	1.14
1394762--1394795	17	2.0	17	100	0	68	17	17	5	58	1.57
1397081--1397107	2	13.5	2	100	0	54	51	0	0	48	1.00
1397787--1397824	20	1.9	20	89	10	60	52	0	0	47	1.00
1398446--1398488	20	2.2	20	83	8	52	32	2	0	65	1.06
1400582--1400782	100	2.0	100	83	1	251	46	3	9	40	1.53
1401925--1402000	38	2.0	39	84	7	102	42	0	0	57	0.98
1402194--1402280	35	2.7	33	82	8	90	39	1	1	58	1.13
1402215--1402270	16	3.5	16	76	13	53	33	1	0	64	1.04
1404460--1404506	24	1.9	24	86	4	67	63	2	0	34	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1404474--1404540	15	4.6	14	74	17	57	62	1	0	35	1.04
1404502--1404545	11	3.9	11	79	5	52	61	0	0	38	0.96
1404457--1404541	23	3.8	23	74	13	79	62	1	0	36	1.03
1404414--1404542	55	2.4	54	74	14	131	61	0	0	37	1.02
1404501--1404551	19	2.9	19	86	13	74	62	0	0	37	0.95
1404487--1404550	28	2.2	30	83	10	80	64	0	0	35	0.94
1404417--1404550	58	2.3	60	78	15	149	61	0	0	38	1.02
1405112--1405146	17	2.1	17	88	0	52	25	0	0	74	0.82
1405711--1405781	21	3.5	20	74	16	58	40	0	2	56	1.14
1405715--1405774	20	2.7	23	77	15	81	38	0	3	58	1.15
1405690--1405774	43	2.0	40	86	6	116	41	1	2	55	1.20
1406347--1406379	10	3.1	11	86	8	50	57	0	3	39	1.14
1407988--1408016	2	14.5	2	100	0	58	48	0	0	51	1.00
1408408--1408442	8	4.1	9	89	10	56	0	8	0	91	0.42
1408408--1408442	17	2.1	16	94	5	61	0	8	0	91	0.42
1422999--1423024	2	13.0	2	100	0	52	50	0	0	50	1.00
1423192--1423233	19	2.2	19	83	8	50	28	0	4	66	1.12
1423353--1423387	18	2.0	17	88	5	52	48	5	0	45	1.26
1424584--1424622	18	2.2	18	85	0	51	56	0	0	43	0.99
1425531--1425575	15	2.9	15	80	6	54	40	0	2	57	1.11
1426644--1426696	22	2.5	20	81	9	61	35	1	0	62	1.06
1427269--1427357	17	5.1	17	71	23	53	56	1	1	41	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1427453--1427477	11	2.3	11	100	0	50	24	0	0	76	0.80
1427659--1427718	24	2.4	25	80	5	77	51	0	0	48	1.00
1428317--1428370	21	2.4	22	82	17	67	48	0	0	51	1.00
1428486--1428530	5	9.4	5	81	13	51	57	0	0	42	0.98
1428487--1428514	14	2.0	14	100	0	56	57	0	0	42	0.99
1428486--1428531	20	2.4	20	89	7	69	56	0	0	43	0.99
1428551--1428620	35	1.9	36	83	11	90	47	1	0	51	1.09
1429265--1429392	8	15.0	8	66	28	52	58	3	1	35	1.26
1429269--1429320	18	3.1	18	73	21	58	63	5	0	30	1.18
1429265--1429347	32	2.6	31	76	10	80	57	4	1	36	1.28
1429325--1429391	29	2.3	28	80	10	73	59	2	1	35	1.22
1429874--1429912	12	3.1	12	85	7	51	30	5	0	64	1.15
1430268--1430332	15	4.0	16	75	18	55	43	0	1	55	1.09
1430272--1430332	17	3.5	18	82	4	63	42	0	1	55	1.09
1430489--1430529	16	2.7	15	81	7	55	21	0	2	75	0.92
1430488--1430531	14	3.1	14	84	15	63	27	0	2	70	0.99
1430591--1430631	21	1.9	22	90	5	66	39	0	0	60	0.96
1430591--1430645	22	2.7	21	86	8	69	40	0	0	60	0.97
1430592--1430630	16	2.4	16	78	0	51	41	0	0	58	0.98
1430580--1430648	29	2.3	30	80	11	72	39	0	0	60	0.97
1430587--1430645	20	3.0	20	83	11	68	38	0	0	61	0.96
1431334--1431388	16	3.4	16	82	12	60	69	1	0	29	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1431334--1431400	27	2.5	26	83	11	82	67	1	0	31	1.00
1431405--1431467	16	4.0	16	75	20	62	53	1	0	44	1.10
1431455--1431516	25	2.8	20	72	21	61	54	0	0	45	0.99
1431387--1431483	32	2.9	32	75	15	99	54	1	1	43	1.14
1431342--1431515	16	10.9	16	64	21	53	59	0	0	39	1.06
1431435--1431531	19	4.7	21	72	18	62	57	1	0	41	1.05
1431464--1431535	28	2.6	28	79	14	78	58	1	0	40	1.07
1431983--1432029	16	2.9	16	84	6	60	63	0	0	36	0.94
1432056--1432102	20	2.4	19	79	13	51	46	0	0	53	1.00
1432073--1432106	12	2.8	12	90	4	50	52	0	0	47	1.00
1432901--1432949	17	2.9	16	80	17	55	71	4	2	22	1.13
1432901--1432949	16	2.9	17	78	6	55	71	4	2	22	1.13
1433719--1433780	24	2.5	25	78	7	72	41	3	1	53	1.27
1433883--1433922	21	1.9	21	90	10	64	47	0	0	52	1.00
1433889--1433952	26	2.5	27	75	10	71	51	0	0	48	1.00
1434447--1434491	20	2.2	20	84	0	54	35	2	0	62	1.08
1436401--1436442	10	4.3	10	81	6	50	38	0	0	61	0.96
1436402--1436445	19	2.3	19	84	0	52	40	0	0	59	0.98
1437069--1437120	3	17.3	3	92	7	88	30	0	0	69	0.89
1437218--1437288	28	2.6	28	80	10	76	57	1	4	36	1.27
1437285--1437365	22	3.7	22	70	16	69	51	1	0	46	1.08
1437353--1437406	5	11.6	5	81	15	55	64	0	0	35	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1437297--1437388	44	2.1	44	84	13	118	56	1	0	42	1.06
1437354--1437398	23	1.9	24	90	4	74	64	0	0	35	0.94
1437771--1437796	7	3.7	7	100	0	52	53	0	0	46	1.00
1437800--1437859	25	2.3	25	77	16	68	41	1	0	56	1.09
1438450--1438508	28	2.0	30	87	9	86	47	0	0	52	1.00
1438450--1438508	29	2.0	30	84	15	79	47	0	0	52	1.00
1438456--1438520	28	2.2	30	78	13	73	50	0	0	49	1.00
1438487--1438537	21	2.5	21	81	12	63	58	0	0	41	0.98
1438545--1438591	23	2.0	23	84	15	62	59	0	0	40	0.97
1438558--1438596	14	2.7	14	84	4	51	58	0	0	41	0.98
1438839--1439006	11	15.9	11	66	23	58	55	1	2	39	1.22
1438897--1438961	18	4.0	17	73	23	52	55	1	1	41	1.18
1438879--1438995	20	5.8	20	70	17	55	56	0	0	41	1.11
1438934--1439012	30	2.9	27	71	15	72	56	0	1	41	1.07
1438935--1439012	36	2.2	36	84	11	99	56	0	1	42	1.07
1438933--1438995	8	7.4	8	77	19	65	57	0	0	42	0.99
1438935--1438995	16	3.5	17	79	16	72	57	0	0	42	0.98
1439271--1439314	22	2.0	21	82	4	52	52	2	4	40	1.34
1439659--1439714	18	3.2	18	73	17	55	39	0	1	58	1.08
1439757--1439795	20	1.9	21	89	5	62	58	0	0	41	0.98
1440483--1440528	21	2.3	21	81	7	60	43	0	0	56	0.99
1440524--1440581	22	2.8	20	78	16	57	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1440532--1440581	22	2.3	23	89	6	77	32	0	0	68	0.90
1440680--1440741	9	6.9	9	72	20	58	46	1	0	51	1.10
1440704--1440747	21	2.1	21	83	8	54	50	4	0	45	1.22
1449713--1449737	13	1.9	13	100	0	50	52	16	8	24	1.70
1451548--1451604	26	2.1	29	87	9	84	33	0	3	63	1.12
1452439--1452468	2	15.0	2	92	0	51	46	0	3	50	1.18
1452444--1452495	16	3.1	16	81	10	68	36	1	13	48	1.54
1452442--1452494	18	2.9	18	82	0	70	35	1	13	49	1.53
1453906--1454047	70	2.0	70	91	0	230	38	20	9	31	1.85
1457391--1457959	291	1.9	292	83	7	742	42	20	12	25	1.86

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20