genome.fa.s206.2.7.7.80.10.50.1000.10.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold206
Parameters: 2 7 7 80 10 50 1000
Length:  2736418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   

This is table  10  of  20  ( 2337 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1247901--1247963	10	6.4	10	76	22	62	38	0	1	60	1.07
1247951--1247991	14	2.7	16	81	14	59	39	0	2	58	1.11
1247937--1248017	42	2.0	41	82	7	101	43	0	1	55	1.07
1247929--1248214	159	1.8	159	89	5	460	41	3	3	52	1.34
1248097--1248138	16	2.5	17	88	7	59	40	0	0	59	0.97
1250018--1250071	19	2.9	19	78	8	58	61	0	0	38	0.96
1250006--1250062	30	1.9	30	82	7	71	52	0	0	47	1.00
1250561--1250602	17	2.5	17	88	0	57	47	0	0	52	1.00
1251016--1251061	18	2.7	16	83	12	56	41	2	0	56	1.11
1251041--1251072	8	4.2	8	88	11	50	37	0	0	62	0.95
1251084--1251132	11	4.5	11	79	5	55	40	0	4	55	1.19
1251090--1251132	5	8.2	5	80	10	50	39	0	2	58	1.11
1251209--1251234	11	2.4	11	100	0	52	26	0	0	73	0.84
1258212--1258278	26	2.6	25	76	11	73	50	0	0	49	1.00
1258681--1258729	14	3.4	14	81	15	64	63	0	2	34	1.06
1259237--1259328	16	5.8	16	67	20	50	42	0	1	56	1.06
1259616--1259663	22	2.2	21	77	3	51	56	2	0	41	1.11
1266275--1266393	63	1.9	63	87	1	177	36	6	10	46	1.66
1266530--1266570	21	2.0	21	85	0	55	65	0	2	31	1.05
1273951--1273985	2	17.5	2	100	0	70	48	0	0	51	1.00
1274675--1274722	22	2.3	20	82	10	62	39	0	0	60	0.97
1275814--1275889	39	2.0	38	82	7	91	34	0	5	60	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1275901--1275962	20	3.1	21	73	17	60	33	4	0	61	1.17
1276454--1276492	18	2.1	19	90	4	62	51	7	2	38	1.44
1276937--1277005	16	4.2	16	73	12	52	31	2	1	63	1.18
1277723--1277785	16	3.8	16	76	17	65	58	1	0	39	1.07
1278176--1278201	2	13.0	2	100	0	52	50	0	0	50	1.00
1279077--1279115	2	19.5	2	89	0	60	46	0	5	48	1.24
1279259--1279285	2	13.5	2	100	0	54	51	0	0	48	1.00
1282641--1282709	36	1.9	36	87	0	102	26	15	15	42	1.88
1283221--1283249	14	2.0	15	93	6	51	68	0	0	31	0.89
1283239--1283309	24	3.0	24	81	8	65	54	0	5	39	1.24
1284508--1284542	2	17.5	2	93	0	61	48	2	0	48	1.16
1291983--1292017	15	2.3	15	90	0	52	62	0	0	37	0.95
1291651--1292183	280	1.9	276	81	11	644	48	9	3	37	1.53
1292694--1292737	3	15.0	3	90	4	63	63	0	0	36	0.95
1292687--1292730	20	2.2	21	80	12	56	63	0	2	34	1.07
1292686--1292736	23	2.2	23	92	0	84	64	0	1	33	1.05
1294749--1294783	4	8.8	4	87	0	52	48	25	2	22	1.64
1299711--1299750	17	2.3	17	87	12	55	67	0	0	32	0.91
1299768--1299836	20	3.8	19	71	25	60	53	0	0	46	1.00
1300146--1300188	22	2.0	22	85	0	59	53	9	4	32	1.53
1300652--1300689	15	2.6	15	83	4	51	55	5	7	31	1.51
1301384--1301410	2	13.5	2	100	0	54	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1304744--1304818	33	2.3	33	81	6	91	14	2	40	42	1.60
1305092--1305174	2	41.5	2	81	0	85	50	7	2	39	1.43
1305092--1305158	28	2.4	28	92	0	107	52	8	1	37	1.42
1305712--1305754	22	2.0	22	86	9	61	44	0	0	55	0.99
1306011--1306047	19	1.9	19	89	10	58	59	0	0	40	0.97
1305990--1306240	128	2.0	128	90	1	396	44	4	6	44	1.50
1306108--1306202	46	2.0	47	85	2	129	48	0	2	49	1.13
1306681--1306797	5	23.8	5	67	18	50	60	2	0	36	1.10
1306707--1306790	6	14.2	6	72	18	61	63	1	0	35	1.03
1306696--1306792	11	8.5	11	73	15	72	62	2	0	35	1.07
1306697--1306790	26	3.7	26	80	12	88	63	2	0	34	1.06
1306842--1306874	17	1.9	17	93	0	57	27	0	0	72	0.85
1307115--1307171	18	3.2	18	77	20	50	57	0	0	42	0.98
1307125--1307179	26	2.1	26	80	12	60	61	1	0	36	1.06
1309181--1309213	7	4.7	7	96	0	57	0	30	9	60	1.27
1312713--1312798	42	2.0	42	100	0	172	25	23	19	31	1.98
1313622--1313679	23	2.4	23	83	11	64	56	1	0	41	1.09
1313762--1313802	20	2.1	18	86	13	55	41	2	0	56	1.13
1322989--1323023	18	1.9	18	88	0	52	8	8	0	82	0.83
1333358--1333413	29	1.9	29	82	7	69	53	0	0	46	1.00
1333381--1333444	22	3.0	22	77	11	69	54	0	0	45	0.99
1333629--1333669	14	2.7	16	78	21	52	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1334088--1334116	5	5.8	5	100	0	58	62	37	0	0	0.96
1341584--1341620	16	2.3	16	100	0	74	37	0	0	62	0.96
1341587--1341671	37	2.3	37	78	11	93	41	0	1	57	1.06
1341635--1341676	19	2.2	20	82	4	50	50	0	0	50	1.00
1341835--1341888	15	3.9	14	76	13	58	44	0	0	55	0.99
1341840--1341889	21	2.5	20	84	12	66	44	0	0	56	0.99
1341962--1341993	16	2.1	15	94	5	55	62	0	0	37	0.95
1354844--1354871	13	2.2	13	100	0	56	57	14	7	21	1.61
1355493--1355554	18	3.2	19	72	21	56	29	0	0	70	0.87
1356556--1356600	16	2.9	16	87	9	58	55	0	0	44	0.99
1356954--1357007	15	3.9	14	79	16	58	40	0	0	59	0.98
1357300--1357370	6	12.3	6	75	23	64	47	0	0	52	1.00
1357311--1357345	11	3.2	11	95	0	61	51	0	0	48	1.00
1357308--1357371	16	3.9	16	80	17	69	50	0	0	50	1.00
1357327--1357406	28	2.7	30	79	14	78	53	0	0	46	1.00
1357374--1357429	21	2.7	20	83	10	67	58	0	0	41	0.98
1357374--1357432	22	2.7	22	80	17	70	59	0	0	40	0.97
1357207--1357502	136	2.1	139	79	10	315	50	1	0	47	1.12
1360956--1360984	2	14.5	2	100	0	58	51	0	0	48	1.00
1367898--1367945	22	2.2	23	81	11	64	50	0	0	50	1.00
1367901--1367951	21	2.4	22	87	6	70	50	0	0	49	1.00
1367922--1367955	17	1.9	18	88	5	52	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1367916--1367969	20	2.6	21	85	5	65	42	0	0	57	0.98
1368114--1368159	11	4.2	11	83	10	58	52	2	0	45	1.13
1369318--1369345	2	14.0	2	100	0	56	50	0	0	50	1.00
1369374--1369419	18	2.4	18	82	7	56	50	2	0	47	1.13
1369645--1369689	21	2.0	21	84	16	56	37	0	0	62	0.96
1369678--1369727	14	3.3	15	78	16	50	42	0	0	58	0.98
1370090--1370131	22	1.9	22	90	9	68	40	0	0	59	0.97
1370243--1370295	22	2.5	21	80	17	65	45	0	0	54	0.99
1370543--1370621	16	5.0	16	71	20	60	36	0	0	63	0.95
1370543--1370613	37	1.9	37	88	5	108	35	0	0	64	0.94
1370548--1370633	26	3.2	29	75	21	78	37	0	0	62	0.95
1370560--1370626	16	4.4	16	73	17	61	37	0	0	62	0.95
1370581--1370626	8	5.6	8	81	2	56	36	0	0	63	0.95
1371586--1371624	18	2.2	19	86	9	55	51	0	0	48	1.00
1373554--1373596	2	21.5	2	95	0	68	46	0	4	48	1.22
1379121--1379200	38	2.1	38	83	0	97	50	0	1	48	1.08
1379567--1379599	14	2.2	16	89	10	52	27	6	0	66	1.15
1379907--1379942	18	2.0	18	89	10	56	61	0	0	38	0.96
1379981--1380013	2	16.5	2	100	0	66	51	0	0	48	1.00
1380436--1380486	22	2.3	22	80	6	59	58	0	0	41	0.98
1380655--1380681	14	1.9	14	100	0	54	62	0	0	37	0.95
1381097--1381149	21	2.5	22	84	12	65	56	5	5	32	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1381108--1381149	21	2.0	22	90	4	68	59	7	2	30	1.37
1381956--1381999	17	2.6	17	89	3	63	50	2	0	47	1.13
1382945--1383031	34	2.6	33	82	8	90	60	1	0	37	1.04
1383150--1383196	20	2.3	21	82	17	64	59	0	0	40	0.97
1383239--1383286	21	2.3	21	82	7	53	54	0	0	45	0.99
1384671--1384708	15	2.4	16	82	4	51	57	0	5	36	1.21
1384791--1384861	31	2.4	29	78	21	76	60	0	0	39	0.97
1385792--1385864	19	3.8	20	74	13	73	41	0	1	57	1.07
1385793--1385867	13	5.3	13	71	20	53	40	0	1	58	1.06
1385808--1385875	29	2.2	32	80	12	81	41	1	1	55	1.18

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20