genome.fa.s7926.2.7.7.80.10.50.1000.21.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007926.1 Hibiscus syriacus cultivar Beakdansim tig00110332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10075380

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   

This is table  21  of  42  ( 5024 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4360678--4360735	20	2.9	20	80	10	64	15	24	17	43	1.87
4362713--4362835	42	2.9	42	80	2	122	22	36	17	22	1.95
4362769--4362835	21	3.2	21	66	6	55	23	35	20	19	1.95
4364195--4364230	14	2.6	14	95	0	63	30	0	25	44	1.54
4364337--4364403	19	3.8	19	71	18	72	43	19	23	13	1.86
4364408--4364558	19	8.7	19	64	21	80	15	22	20	41	1.89
4364412--4364538	33	3.9	32	87	8	193	14	22	19	42	1.88
4364405--4364537	66	2.0	66	97	0	248	16	22	19	41	1.90
4366813--4366837	12	2.1	12	100	0	50	0	28	0	72	0.86
4368103--4368180	20	3.9	20	96	0	138	37	23	23	16	1.94
4368203--4368275	14	4.5	15	74	22	60	13	20	19	46	1.83
4368199--4368265	18	3.8	19	83	16	92	13	22	17	46	1.83
4368382--4368418	14	2.6	14	86	0	56	48	21	0	29	1.50
4370328--4370385	14	3.9	14	79	16	71	10	17	24	48	1.78
4370312--4370401	32	2.8	33	94	3	164	12	18	22	46	1.82
4370386--4370440	20	2.8	19	83	8	65	16	23	23	36	1.94
4370922--4370966	18	2.5	18	88	0	72	13	15	44	26	1.83
4372287--4372324	20	1.9	20	88	0	58	50	21	15	13	1.78
4372588--4372631	22	2.0	22	95	0	79	18	15	45	20	1.85
4372819--4372912	20	4.7	20	77	7	82	22	19	24	34	1.97
4372839--4372916	41	1.9	41	84	5	104	20	17	21	39	1.92
4372799--4372913	20	5.7	19	76	11	77	22	18	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4372902--4372994	20	4.5	21	75	4	91	17	23	19	39	1.92
4372902--4372994	41	2.3	41	98	0	141	17	23	19	39	1.92
4378264--4378307	21	2.1	21	100	0	88	18	9	18	54	1.69
4384262--4384297	13	2.7	13	91	4	54	13	16	0	69	1.19
4388388--4388453	20	3.3	19	77	8	60	28	22	18	30	1.97
4388509--4388579	30	2.4	30	87	0	115	21	26	25	26	1.99
4389465--4389524	29	2.0	31	90	6	97	35	6	16	41	1.75
4389589--4389655	19	3.5	19	89	0	89	40	11	13	34	1.81
4389760--4389801	21	2.0	21	95	0	75	23	21	28	26	1.99
4389829--4389868	20	1.9	21	85	10	55	37	37	10	15	1.80
4390083--4390152	34	2.1	32	86	5	95	32	14	31	21	1.93
4393824--4393858	16	2.1	16	89	5	52	40	2	2	54	1.30
4400975--4401032	30	1.9	30	89	0	89	13	8	15	62	1.54
4401443--4401494	26	2.0	26	92	7	88	17	19	38	25	1.93
4403586--4403717	68	1.9	68	81	0	156	40	20	12	25	1.88
4404509--4404554	19	2.4	19	85	0	65	17	26	30	26	1.97
4404522--4404570	9	5.3	9	78	4	53	14	26	32	26	1.94
4404601--4404791	29	6.7	29	79	10	187	34	5	22	38	1.77
4404599--4404791	87	2.3	87	80	12	222	34	5	22	37	1.76
4405803--4405856	26	2.1	26	89	0	81	27	7	16	48	1.73
4411877--4411932	2	28.0	2	100	0	112	50	0	0	50	1.00
4414386--4414420	18	1.9	18	100	0	70	57	5	2	34	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4414500--4414541	18	2.3	18	87	0	57	42	2	4	50	1.36
4418673--4418730	7	8.1	7	76	17	57	50	1	3	44	1.29
4426739--4427114	2	210.0	2	75	22	358	47	0	1	51	1.07
4428367--4428945	110	5.2	111	92	1	867	45	10	11	32	1.75
4428371--4428944	221	2.6	221	90	1	873	45	10	11	32	1.75
4429404--4429852	111	4.0	111	86	3	607	44	10	10	33	1.74
4429388--4429852	222	2.1	223	89	0	716	44	10	10	33	1.74
4432286--4432373	36	2.4	36	90	3	142	14	40	14	29	1.86
4434247--4434352	35	3.0	35	87	5	169	40	6	10	42	1.65
4434927--4434982	14	4.3	14	76	17	66	10	12	23	53	1.69
4434934--4435003	24	2.9	24	87	4	97	12	10	18	58	1.62
4435728--4435802	10	7.7	10	69	21	61	9	12	21	57	1.62
4435734--4435798	16	4.1	16	95	0	121	7	12	23	56	1.61
4435868--4435900	16	2.1	16	100	0	66	6	12	24	57	1.57
4444516--4444542	3	9.0	3	100	0	54	66	0	0	33	0.92
4445956--4446005	20	2.3	23	80	10	61	42	2	0	56	1.11
4448686--4448728	8	5.6	8	81	10	54	34	0	23	41	1.55
4448686--4448728	14	2.8	16	79	10	54	34	0	23	41	1.55
4449800--4449985	30	6.3	29	78	12	159	48	10	17	23	1.77
4449800--4449985	59	3.2	58	82	9	207	48	10	17	23	1.77
4451154--4451201	3	17.0	3	79	12	57	64	4	0	31	1.12
4451154--4451191	19	2.0	19	94	0	67	63	2	0	34	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4454559--4454591	18	1.9	17	88	11	50	57	0	0	42	0.98
4457349--4457461	18	6.4	18	70	5	79	37	7	10	44	1.69
4457348--4457461	35	3.3	35	82	4	115	36	7	11	43	1.70
4461069--4461184	45	2.6	45	81	0	133	24	8	25	41	1.83
4461182--4461213	17	1.9	17	93	6	57	15	0	34	50	1.45
4477562--4477614	2	26.0	2	96	3	97	49	1	0	49	1.12
4477982--4478034	23	2.2	24	87	12	74	20	20	28	30	1.98
4481176--4481300	25	5.0	25	96	0	214	29	16	20	34	1.94
4481395--4481450	3	20.0	3	78	10	57	67	1	3	26	1.16
4481659--4481809	41	3.4	44	73	14	139	25	18	28	27	1.98
4481650--4481944	89	3.2	89	85	6	355	24	20	28	27	1.99
4481710--4481849	46	3.2	42	72	13	122	26	18	28	26	1.98
4482895--4482931	8	4.5	8	86	6	56	10	13	0	75	1.04
4496501--4496625	25	5.0	25	97	0	223	28	16	20	34	1.94
4496720--4496780	3	21.0	3	77	12	65	67	1	3	27	1.16
4499406--4499450	2	23.0	2	95	4	83	51	0	0	48	1.00
4499503--4499531	2	14.5	2	100	0	58	48	0	0	51	1.00
4507553--4507591	2	20.5	2	84	10	55	56	0	0	43	0.99
4509190--4509313	4	31.5	4	87	3	99	50	12	0	37	1.40
4509190--4509325	8	17.2	8	86	3	159	50	11	0	38	1.38
4509209--4509327	4	29.8	4	89	0	148	50	8	0	41	1.33
4510099--4510136	15	2.5	15	84	12	51	42	21	2	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4512109--4512150	2	21.5	2	95	4	77	52	0	0	47	1.00
4513400--4513443	21	2.0	22	87	12	65	27	4	2	65	1.23
4524194--4524262	25	2.8	25	100	0	138	17	28	26	27	1.97
4524377--4524421	23	2.0	23	86	0	63	20	26	26	26	1.99
4525767--4525823	25	2.3	24	78	3	60	12	12	15	59	1.61
4528098--4528135	9	4.4	9	87	9	53	34	7	0	57	1.28
4535266--4535376	18	5.9	18	80	6	114	21	20	30	27	1.98
4535266--4535376	38	3.0	38	84	2	136	21	20	30	27	1.98
4552214--4552241	12	2.3	12	100	0	56	46	14	7	32	1.71
4552754--4553720	483	2.0	484	92	0	1596	31	19	15	32	1.93
4555489--4555578	39	2.3	39	88	3	128	47	10	5	36	1.60
4555534--4555813	39	7.3	38	76	7	208	45	11	8	34	1.71
4555534--4555813	77	3.6	75	80	4	274	45	11	8	34	1.71
4556210--4556392	45	4.1	45	76	10	155	40	15	8	35	1.78
4556191--4556434	45	5.7	44	72	11	150	42	15	8	33	1.77
4556191--4556434	85	2.8	84	75	11	226	42	15	8	33	1.77
4560906--4560954	24	2.0	25	88	8	73	40	4	4	51	1.40
4565132--4565191	30	2.0	30	100	0	120	66	3	6	23	1.30
4565311--4565345	17	2.1	17	94	0	61	37	31	11	20	1.88
4566893--4566935	11	3.9	11	79	8	52	41	16	9	32	1.80
4577085--4577111	2	13.5	2	100	0	54	51	0	0	48	1.00
4584922--4584970	14	3.1	16	68	26	50	48	4	2	44	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4585081--4585109	13	2.3	13	94	5	51	62	0	6	31	1.22
4585094--4585125	16	1.9	17	93	6	57	68	0	6	25	1.12
4587784--4587954	31	5.5	31	96	0	306	19	18	21	39	1.92
4589974--4590039	31	2.1	31	88	0	96	37	12	28	21	1.89
4591432--4591498	31	2.2	31	83	5	82	34	20	8	35	1.84
4601242--4601276	2	17.5	2	100	0	70	48	0	0	51	1.00
4605064--4605383	160	2.0	160	98	0	622	44	19	12	23	1.84
4622578--4622744	42	4.0	41	92	3	253	19	23	25	32	1.97
4628909--4629087	29	6.2	30	86	7	212	32	5	21	40	1.75
4630013--4630219	42	4.9	42	83	7	226	20	23	22	33	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42