genome.fa.s7926.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007926.1 Hibiscus syriacus cultivar Beakdansim tig00110332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10075380

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   

This is table  36  of  42  ( 5024 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8178569--8178606	7	5.4	7	100	0	76	0	42	0	57	0.98
8178610--8178651	18	2.4	18	84	4	59	4	14	4	76	1.12
8178620--8178658	18	2.3	18	91	8	64	7	12	5	74	1.20
8178525--8178665	16	8.6	16	75	14	65	4	24	1	70	1.13
8187635--8187799	45	3.7	45	97	0	303	38	23	11	27	1.89
8193238--8193741	252	2.0	252	100	0	1008	31	21	17	30	1.96
8195663--8195763	51	2.0	52	92	2	168	39	14	2	42	1.61
8202139--8202194	23	2.4	23	84	0	67	25	28	19	26	1.99
8212763--8212849	29	3.2	29	60	21	69	57	12	14	14	1.66
8212762--8212867	53	2.0	53	100	0	212	54	15	15	15	1.71
8217989--8218032	8	5.5	8	80	0	52	36	0	0	63	0.95
8219466--8219506	17	2.3	19	83	8	50	70	2	0	26	0.99
8219667--8219704	14	2.8	14	88	11	53	52	0	0	47	1.00
8220239--8220308	23	3.0	23	85	0	86	18	12	10	58	1.62
8224295--8224356	31	2.0	31	96	0	115	33	25	20	19	1.96
8232646--8232685	21	1.9	21	89	0	62	25	40	25	10	1.86
8236211--8236276	31	2.1	31	97	0	123	28	16	19	34	1.94
8240684--8240744	31	2.0	30	87	3	86	47	0	3	49	1.18
8254142--8254281	69	2.0	69	98	0	271	22	10	20	46	1.81
8254722--8254768	17	2.6	18	76	6	51	65	4	0	29	1.11
8256486--8256549	15	4.5	15	70	18	64	42	0	3	54	1.16
8256457--8256550	42	2.3	42	90	1	145	42	3	3	51	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8258477--8258507	9	3.6	9	95	4	55	58	0	0	41	0.98
8258728--8258758	16	1.9	16	100	0	62	38	22	25	12	1.90
8258762--8258821	30	2.0	31	90	3	95	53	23	3	20	1.60
8261082--8261107	13	2.0	13	100	0	52	38	0	0	61	0.96
8261084--8261187	28	3.7	27	70	11	91	41	0	2	54	1.21
8261094--8261192	30	3.4	29	66	20	71	41	1	3	54	1.22
8261071--8261195	58	2.2	56	87	5	171	43	0	2	53	1.19
8261178--8261216	20	2.0	20	90	10	62	35	0	0	64	0.94
8261663--8261704	21	2.0	21	100	0	84	23	19	19	38	1.93
8262060--8262126	27	2.5	27	92	0	116	13	8	32	44	1.75
8263209--8263246	12	3.2	12	84	0	58	10	15	47	26	1.78
8263211--8263263	24	2.2	24	86	0	70	15	13	45	26	1.82
8263873--8263916	13	3.5	13	93	3	72	13	15	52	18	1.75
8264667--8264706	21	1.9	21	90	10	64	17	7	0	75	1.03
8274773--8275028	20	12.4	20	70	15	101	30	27	15	26	1.96
8274942--8274993	21	2.5	20	84	3	68	25	26	17	30	1.97
8274896--8274990	48	2.0	47	85	2	127	24	26	16	32	1.96
8274912--8275030	20	5.6	20	72	14	103	25	27	15	31	1.96
8275049--8275092	20	2.2	20	91	0	70	31	18	22	27	1.97
8275055--8275207	20	7.2	20	70	13	83	30	15	26	28	1.96
8275063--8275159	48	2.0	48	92	2	160	30	17	26	24	1.97
8275216--8275304	20	4.4	20	98	0	169	24	29	17	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8275299--8275384	20	4.2	20	76	2	82	34	15	23	26	1.94
8275387--8275425	20	2.0	20	89	0	60	35	17	23	23	1.95
8275459--8275592	20	6.6	20	81	5	99	23	15	19	41	1.90
8275485--8275592	40	2.7	40	79	4	110	25	14	19	40	1.90
8281002--8281040	3	13.0	3	100	0	78	66	33	0	0	0.92
8286854--8286910	20	2.8	21	71	7	55	47	1	1	49	1.22
8287742--8287869	60	2.1	60	88	2	186	35	15	17	31	1.91
8293953--8294014	32	1.9	32	96	0	115	38	22	9	29	1.86
8299993--8300021	2	14.5	2	100	0	58	48	0	0	51	1.00
8303448--8303501	22	2.7	20	76	21	58	29	3	1	64	1.21
8310181--8310232	11	4.2	12	73	22	54	26	1	0	71	0.97
8310182--8310235	21	2.5	22	84	6	65	25	1	0	72	0.95
8310366--8310403	13	2.9	14	88	11	55	18	5	0	76	0.97
8321786--8322370	105	5.6	105	98	0	1125	33	26	17	22	1.96
8323770--8323803	2	17.5	2	87	6	52	47	0	2	50	1.16
8324056--8324096	19	2.0	21	86	9	59	21	2	0	75	0.92
8324226--8324268	14	3.1	14	83	12	54	20	4	0	74	1.00
8326462--8326521	14	3.9	15	78	10	59	50	0	1	48	1.11
8329440--8329501	2	31.0	2	100	0	124	50	0	0	50	1.00
8330674--8330726	27	2.0	27	92	0	88	39	9	3	47	1.54
8330882--8330921	2	20.0	2	100	0	80	50	0	0	50	1.00
8337808--8338123	20	15.4	20	80	9	316	34	25	19	20	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8337914--8338084	87	2.0	87	89	4	265	32	26	19	21	1.97
8338806--8338852	24	2.0	24	87	8	69	25	14	21	38	1.92
8339027--8339051	12	2.1	12	100	0	50	72	0	28	0	0.86
8341335--8341646	19	17.4	19	84	13	430	47	17	20	14	1.83
8341363--8341646	52	5.2	55	92	7	394	47	16	21	14	1.83
8341335--8341668	52	6.3	55	88	9	386	46	17	20	14	1.83
8341675--8341776	19	5.6	19	85	12	151	14	23	17	44	1.86
8341883--8341919	14	2.6	14	91	0	65	45	21	0	32	1.52
8343877--8343933	14	3.7	14	77	20	60	45	22	21	10	1.82
8343858--8343950	33	2.8	33	95	0	168	47	21	20	10	1.80
8343821--8343955	19	7.6	19	76	16	128	45	23	19	11	1.82
8343951--8344079	19	7.3	19	75	17	125	8	17	28	45	1.77
8343951--8344042	33	2.8	33	93	3	150	7	18	28	45	1.76
8344123--8344593	93	5.1	93	97	1	903	46	18	12	22	1.83
8344123--8344593	185	2.6	185	98	0	917	46	18	12	22	1.83
8346300--8346389	14	5.7	14	74	23	81	42	23	25	8	1.83
8346292--8346406	33	3.5	33	95	0	212	45	20	24	9	1.81
8346299--8346411	19	6.8	18	72	23	88	43	22	24	9	1.83
8346423--8346477	14	3.6	14	73	21	56	9	25	23	41	1.83
8346407--8346477	33	2.2	33	94	0	124	8	22	25	43	1.81
8346418--8346499	33	2.5	33	89	2	119	9	25	21	42	1.84
8346430--8346518	20	4.8	20	72	19	75	12	24	19	43	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8346598--8346668	33	2.2	33	92	0	115	47	18	22	11	1.80
8346850--8346904	22	2.5	22	81	0	74	20	16	40	23	1.91
8347050--8347242	20	9.6	20	82	5	219	19	19	25	35	1.95
8347050--8347242	60	3.2	60	83	0	251	19	19	25	35	1.95
8347298--8347349	20	2.6	20	96	0	95	21	13	26	38	1.90
8355785--8355833	24	2.1	24	84	3	64	51	12	4	32	1.58
8356324--8356388	31	2.1	30	97	2	121	36	12	6	44	1.67
8367505--8367624	59	2.0	59	82	6	145	35	15	17	32	1.91
8372216--8372269	23	2.2	25	87	9	76	33	12	5	48	1.65
8372216--8372270	24	2.2	26	81	12	71	32	12	5	49	1.64
8384699--8384736	2	19.0	2	100	0	76	50	0	0	50	1.00
8385603--8385720	43	2.8	43	96	1	211	38	9	11	40	1.74
8398018--8398068	25	2.0	25	100	0	102	45	11	23	19	1.83
8407593--8407675	29	2.8	29	94	1	139	33	14	9	42	1.78
8411933--8412013	29	2.8	29	94	1	135	43	8	14	33	1.76
8419206--8419236	2	15.5	2	100	0	62	51	0	0	48	1.00
8420020--8420064	23	2.0	23	91	8	74	35	22	8	33	1.85
8422162--8422376	64	3.5	61	77	10	188	35	20	17	26	1.94
8422206--8422376	58	2.8	62	81	5	197	35	21	16	26	1.94
8435839--8435900	31	2.0	31	90	0	97	48	4	1	45	1.33
8435828--8435914	31	2.6	33	78	14	90	47	5	1	45	1.34
8435970--8436009	11	3.6	11	93	0	62	57	2	0	40	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8440498--8440528	15	2.1	15	100	0	62	19	32	0	48	1.49
8444824--8444849	4	6.5	4	100	0	52	26	0	50	23	1.50
8452462--8453017	277	2.0	277	97	0	1040	41	13	13	31	1.83
8463156--8463206	19	2.6	20	90	3	77	43	23	17	15	1.88
8463156--8463536	20	18.6	20	77	7	219	38	18	23	18	1.93
8463281--8463534	83	3.1	83	89	1	370	37	17	25	20	1.94
8463281--8463536	103	2.5	100	88	5	377	36	17	25	20	1.94
8463623--8463654	6	5.5	6	96	3	57	31	53	15	0	1.43
8464441--8464484	20	2.2	20	91	0	70	11	18	15	54	1.70
8464471--8464788	20	15.6	20	77	7	183	19	22	19	38	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42