genome.fa.s7926.2.7.7.80.10.50.1000.27.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007926.1 Hibiscus syriacus cultivar Beakdansim tig00110332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10075380

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   

This is table  27  of  42  ( 5024 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5663364--5663547	94	2.0	93	85	10	250	52	6	0	40	1.27
5663846--5663874	6	5.0	6	91	8	51	17	31	34	17	1.93
5673038--5673168	66	2.0	66	86	3	183	27	20	19	32	1.97
5683248--5683310	28	2.3	27	78	8	63	46	1	3	49	1.27
5683386--5683419	16	2.0	18	88	11	54	64	5	2	26	1.30
5683539--5683581	21	2.0	21	100	0	86	39	0	13	46	1.44
5683550--5683635	35	2.5	35	84	0	100	37	1	20	40	1.61
5683766--5683823	29	2.0	29	86	6	82	27	8	29	34	1.87
5683877--5684540	195	3.4	194	78	8	649	36	15	21	25	1.93
5692954--5692995	2	22.0	2	90	9	70	47	0	0	52	1.00
5696635--5696712	40	2.0	40	100	0	156	21	10	17	50	1.76
5696681--5696885	102	2.0	102	100	0	410	35	21	13	29	1.92
5699928--5700065	62	2.3	59	84	7	183	58	16	12	12	1.63
5700528--5700567	21	1.9	21	89	0	62	52	5	5	37	1.45
5700563--5700601	20	2.0	20	85	5	53	46	0	7	46	1.31
5707124--5707192	36	1.9	36	100	0	138	23	15	23	37	1.93
5709349--5709405	15	3.7	15	72	9	51	24	33	24	17	1.96
5714542--5714611	35	2.0	35	85	2	95	31	7	38	22	1.81
5715397--5715617	64	3.5	61	81	8	230	32	20	19	27	1.97
5715905--5716057	67	2.3	67	95	2	272	37	1	22	39	1.62
5716330--5716479	29	5.0	30	91	6	243	17	18	24	40	1.91
5719520--5719743	64	3.5	63	82	3	243	33	20	19	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5720381--5720532	31	5.0	31	94	4	267	19	18	23	39	1.92
5723622--5723841	64	3.5	61	81	4	176	32	20	19	27	1.97
5723675--5723841	64	2.6	64	84	1	210	33	20	18	26	1.96
5724498--5724591	31	3.0	31	92	3	136	18	19	23	39	1.92
5729153--5729191	20	2.0	20	89	0	60	76	2	0	20	0.90
5731438--5731479	18	2.4	18	84	7	61	33	0	0	66	0.92
5731435--5731490	20	2.9	19	73	24	55	30	0	1	67	1.01
5734334--5734396	33	1.9	33	84	12	85	47	1	0	50	1.10
5734434--5734482	2	24.5	2	95	0	89	46	0	2	51	1.12
5735019--5735081	29	2.2	29	97	0	117	14	33	33	19	1.91
5735145--5735182	20	1.9	20	94	0	67	15	13	50	21	1.78
5735146--5735189	20	2.2	20	87	0	61	15	13	50	20	1.78
5735132--5735233	51	2.0	51	100	0	204	15	11	50	21	1.76
5735196--5735238	20	2.2	20	95	0	77	16	13	48	20	1.80
5735301--5735383	43	2.0	40	84	11	105	19	22	27	30	1.98
5735743--5735786	21	2.1	21	91	0	70	29	0	15	54	1.42
5735763--5735825	28	2.2	30	91	5	103	31	0	11	57	1.34
5736528--5736586	26	2.3	25	75	18	66	47	8	3	40	1.51
5738347--5738470	45	2.8	44	80	15	125	47	12	0	40	1.41
5738410--5738498	41	2.2	40	78	8	90	46	10	1	42	1.45
5738877--5739007	29	4.6	29	93	1	212	23	30	30	15	1.95
5739048--5739094	21	2.2	21	100	0	94	14	29	25	29	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5739095--5739154	29	2.1	29	96	0	111	18	28	28	25	1.98
5744284--5744322	14	2.8	13	88	11	51	23	2	2	71	1.10
5744282--5744324	18	2.5	17	81	7	52	25	2	2	69	1.12
5744322--5744364	2	21.5	2	95	0	77	46	0	2	51	1.13
5744752--5744776	2	12.5	2	100	0	50	48	0	0	52	1.00
5744829--5744862	9	3.8	9	92	7	52	20	2	0	76	0.92
5744829--5744863	13	2.6	14	90	4	54	20	2	0	77	0.90
5747888--5747949	23	2.7	22	80	9	72	79	6	14	0	0.93
5747888--5747956	20	3.2	20	82	10	66	79	5	13	1	0.97
5748566--5748616	22	2.3	22	96	0	93	35	27	11	25	1.91
5749494--5749598	36	2.9	36	91	2	165	24	23	13	38	1.91
5749494--5749603	37	3.0	37	90	2	168	26	23	12	37	1.91
5749512--5749903	102	3.9	102	94	0	660	29	21	12	36	1.90
5749630--5749700	37	1.9	37	88	0	106	23	21	12	42	1.87
5749716--5749802	37	2.4	37	86	5	115	25	21	13	39	1.90
5749512--5749970	204	2.2	203	89	1	684	29	21	12	36	1.91
5749817--5749886	36	1.9	36	85	0	95	27	21	12	38	1.90
5749832--5749903	36	2.0	36	83	0	90	26	23	12	37	1.90
5749845--5750003	67	2.4	67	87	4	223	32	22	11	33	1.90
5750837--5751497	105	6.3	105	91	3	958	33	26	18	21	1.97
5752497--5752543	12	3.7	13	80	13	53	25	2	2	70	1.10
5752498--5752541	21	2.1	21	83	8	54	25	2	2	70	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5752495--5752538	18	2.6	17	82	7	54	25	2	2	70	1.10
5752541--5752575	2	17.5	2	100	0	70	48	0	0	51	1.00
5752751--5752777	2	13.5	2	100	0	54	48	0	0	51	1.00
5752969--5753033	2	32.5	2	100	0	130	49	0	0	50	1.00
5753078--5753137	31	1.9	31	83	6	77	13	13	1	71	1.22
5757559--5757606	15	3.4	14	78	18	55	50	0	2	47	1.12
5760521--5760569	24	2.0	24	100	0	98	22	12	12	53	1.71
5766875--5767057	97	1.9	98	90	3	298	50	6	2	40	1.40
5767932--5768025	44	2.2	43	86	5	129	52	8	1	38	1.39
5773558--5773596	2	19.5	2	100	0	78	51	0	0	48	1.00
5774211--5774253	18	2.2	20	84	12	54	53	20	0	25	1.46
5776102--5776141	20	2.1	19	86	13	55	57	2	0	40	1.12
5790202--5790253	20	2.6	20	96	0	95	38	26	13	21	1.90
5790309--5790502	20	9.6	20	76	8	76	35	25	19	19	1.95
5790305--5790502	40	5.0	39	81	4	200	35	26	19	19	1.95
5790309--5790501	60	3.2	60	83	0	251	35	25	19	19	1.95
5790879--5790949	33	2.2	33	92	0	115	11	22	18	47	1.80
5791070--5791124	14	3.6	14	73	21	56	41	23	25	9	1.83
5791070--5791140	33	2.2	33	94	0	124	43	25	22	8	1.81
5791136--5791233	19	5.7	19	70	22	81	10	24	22	42	1.84
5791158--5791247	14	5.7	14	74	23	81	8	25	23	42	1.83
5791141--5791255	33	3.5	33	95	0	212	9	24	20	45	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5792954--5793425	185	2.6	185	98	0	919	22	12	18	46	1.83
5792954--5793425	93	5.1	93	98	1	921	22	12	18	46	1.83
5793469--5793603	19	7.6	19	76	16	119	46	23	18	11	1.81
5793525--5793581	14	3.7	14	77	20	60	45	22	21	10	1.82
5793506--5793598	33	2.8	33	95	0	168	47	21	20	10	1.80
5793599--5793727	19	7.3	19	75	17	125	10	18	24	46	1.81
5793615--5793671	14	3.7	14	77	20	60	10	21	22	45	1.82
5793599--5793690	33	2.8	33	94	0	166	10	20	21	46	1.81
5795651--5795686	14	2.6	14	95	0	63	33	0	22	44	1.53
5795793--5795894	19	5.6	19	84	13	151	44	17	23	14	1.86
5795901--5796224	33	9.5	33	78	14	181	13	20	18	46	1.83
5795901--5796196	52	5.6	52	91	3	255	14	21	17	46	1.83
5795901--5796138	85	2.8	85	89	6	351	14	21	18	46	1.83
5798507--5798531	12	2.1	12	100	0	50	0	28	0	72	0.86
5798706--5798752	24	2.0	24	87	8	69	38	21	14	25	1.92
5799435--5799803	20	18.5	20	86	4	458	20	18	26	34	1.96
5802571--5802619	24	2.1	23	92	3	80	30	24	10	34	1.89
5803039--5803112	21	3.6	21	77	3	87	18	18	28	33	1.95
5803060--5803138	20	3.9	20	80	3	104	15	22	22	39	1.91
5803038--5803132	41	2.3	41	98	0	181	16	20	26	36	1.93
5803063--5803151	20	4.5	19	77	6	72	16	21	22	39	1.92
5803142--5803195	22	2.5	22	84	0	81	18	14	29	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5803292--5803347	6	9.5	6	98	1	105	32	51	16	0	1.44
5803845--5803985	5	27.2	5	94	4	187	0	19	44	36	1.51
5804081--5804146	19	3.3	19	72	12	69	39	19	19	21	1.93
5804081--5804170	41	2.2	41	93	0	153	37	20	20	22	1.94
5804161--5804235	21	3.6	21	72	3	80	34	29	14	21	1.93
5804162--5804438	41	6.8	41	82	6	264	37	24	18	18	1.93
5804228--5804417	20	9.4	20	68	17	115	40	22	21	16	1.91
5804238--5804332	19	4.8	19	75	13	86	42	18	22	16	1.89
5804282--5804353	22	3.4	22	71	11	78	38	25	18	18	1.92
5804365--5804459	21	4.6	21	82	2	129	32	26	17	23	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42