genome.fa.s7926.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007926.1 Hibiscus syriacus cultivar Beakdansim tig00110332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10075380

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   

This is table  31  of  42  ( 5024 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6562674--6562699	6	4.3	6	100	0	52	19	34	15	30	1.93
6564131--6564306	92	1.9	90	85	6	239	39	9	5	46	1.59
6570874--6570946	18	3.9	18	74	13	76	28	32	19	19	1.96
6577695--6577745	18	2.8	18	80	11	59	33	33	15	17	1.92
6578334--6578404	19	3.7	19	92	0	115	22	33	15	28	1.95
6579538--6579625	46	1.9	46	95	0	158	32	20	11	35	1.88
6594953--6595095	76	1.9	76	89	1	223	40	20	20	18	1.91
6597571--6597629	14	3.7	14	74	25	55	55	3	3	37	1.33
6599342--6599418	24	3.6	22	75	20	67	29	19	25	24	1.98
6600372--6600409	19	2.0	19	85	10	51	42	7	13	36	1.73
6600545--6600573	2	14.5	2	100	0	58	51	0	0	48	1.00
6602092--6602127	2	18.5	2	88	5	56	50	0	0	50	1.00
6603776--6603816	17	2.4	18	84	11	52	63	2	0	34	1.08
6611003--6611041	21	1.9	20	89	5	60	33	12	10	43	1.77
6612526--6612554	13	2.1	14	93	6	51	34	20	13	31	1.92
6612728--6612845	59	2.0	59	81	0	137	41	13	9	35	1.77
6620570--6620640	36	2.0	36	88	0	106	43	15	11	29	1.81
6622225--6622278	20	2.7	20	94	0	90	35	20	20	24	1.96
6622265--6622352	20	4.4	20	88	0	113	31	22	18	27	1.97
6626418--6626510	42	2.2	42	80	3	107	22	17	39	20	1.92
6626990--6627101	20	5.6	20	92	0	143	38	22	17	21	1.93
6627129--6627303	20	9.4	20	76	16	135	21	18	18	40	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6627149--6627282	33	3.8	34	76	7	117	17	19	20	42	1.89
6629185--6629254	20	3.5	20	90	0	86	41	25	17	15	1.89
6629184--6629297	33	3.2	33	73	17	95	43	24	18	13	1.85
6629844--6629955	20	5.6	18	76	16	80	21	20	20	37	1.94
6629844--6629955	41	2.8	40	86	4	136	21	20	20	37	1.94
6630336--6630361	5	5.2	5	100	0	52	38	0	61	0	0.96
6630614--6630662	2	24.5	2	95	0	80	44	0	51	4	1.20
6662828--6662873	16	3.0	16	78	6	51	60	0	2	36	1.09
6674724--6674757	17	2.0	17	88	0	50	14	0	32	52	1.42
6675381--6675420	22	1.9	20	85	10	53	22	40	25	12	1.89
6701956--6702047	20	5.0	20	70	20	83	33	5	17	43	1.72
6701940--6702054	52	2.2	51	98	1	221	28	6	16	48	1.70
6705296--6705378	34	2.4	34	82	6	96	25	19	15	39	1.91
6705784--6705874	44	2.0	45	91	2	148	30	3	19	46	1.66
6706047--6706156	42	2.6	42	77	7	125	29	6	15	49	1.69
6708084--6708124	21	2.0	21	90	0	64	31	29	21	17	1.96
6708152--6708189	20	1.9	20	88	0	58	23	34	31	10	1.89
6708671--6708888	103	2.1	103	94	0	391	22	14	25	37	1.92
6708905--6708972	23	3.0	23	82	4	84	23	25	26	25	2.00
6715104--6715136	13	2.5	13	90	9	50	12	12	0	75	1.04
6718823--6720634	605	3.0	605	97	0	3409	34	13	16	34	1.88
6722382--6722416	2	18.0	2	94	5	63	0	51	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6738309--6738369	32	1.9	32	83	9	81	67	3	0	29	1.07
6738315--6738370	24	2.3	25	87	6	87	67	3	0	28	1.07
6741090--6741131	18	2.3	19	80	12	52	59	4	11	23	1.51
6749324--6749379	27	2.1	27	100	0	112	37	16	17	28	1.91
6756319--6756433	58	2.0	58	92	0	194	38	6	0	54	1.31
6756506--6756590	35	2.4	35	80	5	82	62	4	1	31	1.23
6756555--6756588	12	2.8	12	83	16	52	61	2	0	35	1.11
6759987--6760041	23	2.5	21	85	8	74	34	0	1	63	1.05
6760026--6760052	12	2.2	12	100	0	54	29	0	7	62	1.22
6763776--6763833	30	1.9	30	89	0	89	25	20	20	32	1.97
6766542--6766589	12	4.2	11	80	15	53	12	12	4	70	1.29
6772925--6772988	23	2.8	22	80	4	74	28	26	25	20	1.99
6773004--6773530	103	5.1	103	96	0	982	37	24	13	25	1.91
6774014--6774054	20	2.0	20	85	0	55	9	26	31	31	1.89
6774079--6774121	21	2.0	21	90	0	68	16	23	27	32	1.96
6776835--6776859	12	2.1	12	100	0	50	48	0	36	16	1.46
6777829--6777872	19	2.3	19	96	0	79	45	18	6	29	1.75
6781846--6781873	2	14.0	2	100	0	56	50	0	0	50	1.00
6795929--6795989	18	3.3	18	80	15	70	22	29	6	40	1.79
6795920--6795989	18	3.8	18	82	14	65	24	28	7	40	1.81
6796525--6796563	19	2.1	19	95	0	69	41	23	20	15	1.90
6802020--6802062	21	2.0	21	90	0	68	32	27	23	16	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6802089--6802127	20	2.0	20	89	0	60	23	33	33	10	1.88
6802607--6802924	103	3.1	103	97	0	591	26	12	23	36	1.91
6802951--6802994	23	1.9	23	95	0	79	18	34	27	20	1.96
6802943--6803006	23	2.8	22	76	9	74	20	28	26	25	1.99
6809051--6809093	21	2.0	21	90	0	68	32	27	23	16	1.96
6809120--6809158	20	2.0	20	89	0	60	23	33	33	10	1.88
6809640--6809960	103	3.1	103	96	0	597	25	12	23	37	1.91
6809985--6810039	23	2.4	23	84	0	65	21	27	25	25	2.00
6810474--6810729	127	2.0	127	99	0	503	28	10	14	46	1.77
6811387--6811608	109	2.0	109	88	0	327	44	16	18	20	1.87
6814170--6814289	60	2.0	60	80	9	138	35	10	13	40	1.79
6816924--6817372	229	2.0	227	94	0	790	45	8	7	39	1.61
6817603--6817649	20	2.4	19	82	10	67	53	10	17	19	1.72
6817612--6817654	20	2.3	19	88	11	63	51	11	16	20	1.75
6819882--6819946	21	3.1	21	80	6	69	40	15	29	15	1.88
6819979--6820044	33	2.0	33	90	0	105	28	0	48	22	1.51
6821834--6821882	19	2.6	19	90	6	73	30	4	10	55	1.52
6822007--6823281	197	6.5	197	97	0	2333	36	14	16	32	1.89
6824745--6824818	24	3.0	25	78	9	71	36	9	33	20	1.85
6824757--6824831	3	25.0	3	73	0	60	36	6	34	22	1.81
6824754--6824827	12	6.2	12	82	0	85	36	8	35	20	1.82
6825761--6825805	22	2.1	22	83	4	56	42	8	8	40	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6825812--6826621	183	4.4	183	96	0	1476	36	13	16	33	1.88
6829106--6829159	23	2.3	23	93	0	90	37	5	16	40	1.72
6829591--6829627	18	2.1	18	89	0	56	32	5	10	51	1.60
6829583--6829629	24	2.0	24	86	0	67	34	4	14	46	1.64
6829884--6829970	39	2.2	39	91	0	147	48	19	13	18	1.81
6830390--6830462	23	3.2	23	88	0	101	34	4	21	39	1.73
6830824--6830896	23	3.2	23	88	0	101	34	4	21	39	1.73
6830179--6831245	434	2.5	432	97	0	2014	41	7	12	38	1.71
6838317--6838354	19	2.0	20	94	5	69	28	15	28	26	1.96
6838322--6838480	63	2.5	62	81	4	185	32	18	22	27	1.97
6838936--6839241	149	2.0	150	98	1	587	28	15	20	35	1.93
6839219--6839264	23	2.0	23	91	0	74	21	23	26	28	1.99
6841611--6841661	23	2.2	23	100	0	102	37	25	11	25	1.90
6852529--6852567	21	1.9	21	89	5	62	41	2	7	48	1.45
6873988--6874047	18	3.4	18	70	21	63	40	20	3	36	1.69
6873978--6874049	35	2.1	35	100	0	144	40	16	5	37	1.72
6876760--6876807	23	2.1	23	84	0	60	35	10	18	35	1.85
6877233--6877295	23	2.7	23	92	0	99	38	20	4	36	1.74
6877666--6877728	23	2.7	23	92	0	99	38	20	4	36	1.74
6878100--6878162	23	2.7	23	92	0	99	38	20	4	36	1.74
6876874--6878374	433	3.5	434	98	0	2870	39	12	7	40	1.72
6878581--6878666	39	2.2	39	93	0	145	18	13	18	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6878913--6878961	24	2.0	25	88	4	73	48	14	4	32	1.62
6879376--6879437	23	2.4	26	74	20	67	40	16	4	38	1.69
6879385--6879438	23	2.3	23	93	0	90	40	16	5	37	1.72
6881923--6882731	183	4.4	183	97	0	1485	33	16	13	36	1.88
6881923--6882731	365	2.2	366	96	0	1512	33	16	13	36	1.88
6884199--6884273	3	25.0	3	73	0	60	22	34	6	36	1.81
6884203--6884285	12	6.9	12	83	0	94	20	34	8	36	1.83
6884207--6884285	36	2.2	36	90	0	122	20	35	8	35	1.84
6884227--6884288	18	3.4	18	79	0	79	17	35	9	37	1.83
6884203--6884288	6	14.3	6	77	0	64	19	34	8	37	1.82

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42