genome.fa.s7926.2.7.7.80.10.50.1000.26.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007926.1 Hibiscus syriacus cultivar Beakdansim tig00110332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10075380

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   

This is table  26  of  42  ( 5024 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5582800--5582890	20	4.9	20	65	20	63	35	5	14	45	1.68
5582799--5582943	53	2.8	52	95	2	263	33	5	13	47	1.65
5582905--5582944	20	2.0	20	95	0	71	37	5	12	45	1.64
5584528--5584564	2	18.5	2	100	0	74	48	0	51	0	1.00
5590540--5590568	10	2.9	10	100	0	58	0	41	27	31	1.56
5604465--5604497	14	2.4	14	94	0	57	51	3	6	39	1.42
5604232--5604732	263	2.0	250	91	7	810	44	8	6	40	1.60
5623585--5624667	214	5.1	213	85	3	1289	25	12	23	38	1.89
5623585--5624720	432	2.6	426	83	4	1356	25	12	23	38	1.90
5629491--5629535	10	4.2	10	83	13	54	62	2	0	35	1.08
5629497--5629541	11	4.1	11	86	8	56	60	4	0	35	1.17
5636113--5637516	700	2.0	700	99	0	2756	34	13	19	32	1.90
5639045--5639169	31	4.0	31	96	2	225	38	24	19	18	1.93
5639826--5640046	64	3.5	64	82	6	234	27	19	19	33	1.96
5643725--5643910	31	6.0	31	98	1	347	38	23	19	18	1.93
5644567--5644787	64	3.5	64	79	7	191	27	16	21	34	1.95
5645928--5645988	20	3.1	19	73	19	61	27	34	24	13	1.93
5645929--5645988	21	2.9	21	74	16	63	28	33	25	13	1.93
5653097--5653122	6	4.3	6	100	0	52	0	69	0	30	0.89
5657416--5657444	10	2.9	10	100	0	58	20	31	27	20	1.98
5657637--5657679	22	2.0	22	100	0	86	51	13	0	34	1.42
5657639--5657687	22	2.2	22	88	3	71	55	14	0	30	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5657627--5663457	54	106.4	54	70	19	2086	52	13	0	34	1.42
5657659--5657769	32	3.7	32	79	18	155	53	15	0	31	1.42
5657747--5657791	22	2.1	21	91	4	72	51	13	0	35	1.41
5657886--5657927	22	1.9	22	90	0	57	50	16	0	33	1.46
5657768--5663410	166	34.3	164	74	17	3364	52	13	0	34	1.42
5657935--5657979	22	2.1	21	91	4	72	51	13	0	35	1.41
5657991--5658061	22	3.0	22	80	10	79	50	15	0	33	1.44
5658016--5658068	22	2.5	21	73	11	54	52	11	0	35	1.37
5658039--5663103	32	177.7	32	71	25	3052	52	13	0	34	1.41
5658062--5658114	14	3.5	14	72	18	52	56	5	0	37	1.23
5658103--5658145	22	2.0	22	100	0	86	51	13	0	34	1.42
5658105--5658153	22	2.2	22	88	3	71	55	14	0	30	1.40
5658159--5658207	22	2.2	22	85	3	62	55	12	0	32	1.37
5658202--5658248	22	2.1	22	88	7	69	57	6	0	36	1.24
5658211--5658253	22	2.0	22	95	0	77	53	9	0	37	1.33
5658213--5658261	22	2.2	22	85	3	62	57	10	0	32	1.32
5658295--5658339	22	2.1	21	95	4	81	53	13	0	33	1.40
5658299--5658347	22	2.2	22	92	3	80	57	14	0	28	1.38
5658422--5658474	14	3.5	14	72	18	52	54	7	0	37	1.29
5658463--5658553	22	4.0	22	79	10	110	51	15	0	32	1.44
5658538--5658626	18	5.4	17	65	20	55	52	12	0	34	1.39
5658627--5658668	22	2.0	21	95	4	75	52	14	0	33	1.42
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5658631--5658679	22	2.2	22	88	3	71	55	14	0	30	1.40
5658754--5658806	14	3.5	14	76	18	61	56	7	0	35	1.28
5658795--5658837	22	2.0	22	95	0	77	48	13	0	37	1.43
5658797--5658845	22	2.2	22	85	3	62	53	14	0	32	1.41
5659051--5659092	22	1.9	22	95	0	66	52	16	0	30	1.44
5659102--5659172	22	3.0	22	80	10	79	50	15	0	33	1.44
5659127--5659179	22	2.5	21	73	11	54	52	11	0	35	1.37
5659173--5659225	14	3.5	14	72	18	52	56	5	0	37	1.23
5659214--5659256	22	2.0	22	100	0	86	51	13	0	34	1.42
5659216--5659264	22	2.2	22	88	3	71	55	14	0	30	1.40
5659270--5659318	22	2.2	22	85	3	62	55	12	0	32	1.37
5659313--5659359	22	2.1	22	88	7	69	57	6	0	36	1.24
5659322--5659364	22	2.0	22	95	0	77	53	9	0	37	1.33
5659324--5659372	22	2.2	22	85	3	62	57	10	0	32	1.32
5659511--5659563	14	3.5	14	72	18	52	54	7	0	37	1.29
5659552--5659642	22	4.0	22	79	10	110	51	15	0	32	1.44
5659627--5659715	18	5.4	17	65	20	55	52	12	0	34	1.39
5659716--5659760	22	2.1	21	95	4	81	53	13	0	33	1.40
5659720--5659768	22	2.2	22	92	3	80	57	14	0	28	1.38
5659843--5659895	14	3.5	14	72	18	52	54	7	0	37	1.29
5659884--5659926	22	2.0	22	95	0	77	48	13	0	37	1.43
5659886--5659934	22	2.2	22	85	3	62	53	14	0	32	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5659968--5660025	18	3.4	18	68	18	61	53	13	0	32	1.40
5660143--5660184	22	1.9	22	95	0	66	52	16	0	30	1.44
5660192--5660236	22	2.1	21	91	4	72	51	13	0	35	1.41
5660475--5660516	22	1.9	22	95	0	66	52	16	0	30	1.44
5660524--5660568	22	2.1	21	91	4	72	51	13	0	35	1.41
5660651--5660703	14	3.5	14	72	18	52	56	5	0	37	1.23
5660692--5660734	22	2.0	22	100	0	86	51	13	0	34	1.42
5660693--5660742	22	2.2	22	92	3	82	52	14	0	34	1.42
5660746--5660788	22	2.0	22	100	0	86	51	13	0	34	1.42
5660748--5660796	22	2.2	22	88	3	71	55	14	0	30	1.40
5660884--5660928	22	2.1	21	91	4	72	53	11	0	35	1.37
5660888--5660936	22	2.2	22	88	3	71	57	12	0	30	1.36
5661011--5661063	14	3.5	14	76	18	61	56	5	0	37	1.23
5661052--5661142	22	4.0	22	78	10	101	51	14	0	34	1.42
5661127--5661215	18	5.4	17	65	20	55	52	12	0	34	1.39
5661209--5661255	22	2.1	22	88	7	69	59	6	0	34	1.23
5661216--5661260	22	2.1	21	91	4	72	55	11	0	33	1.35
5661263--5661335	22	3.1	23	70	14	60	53	13	1	31	1.49
5661343--5661395	14	3.5	14	72	18	52	54	7	0	37	1.29
5661382--5661426	22	2.1	21	91	4	72	48	15	0	35	1.45
5661387--5661435	22	2.2	22	82	7	55	53	16	0	30	1.43
5661438--5661480	22	2.0	22	95	0	77	51	11	0	37	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5661440--5661488	22	2.2	22	85	3	62	55	12	0	32	1.37
5661669--5661757	18	5.4	18	65	24	70	53	11	1	33	1.44
5661524--5661684	22	7.0	22	77	10	169	51	14	0	33	1.43
5661831--5661913	15	5.5	15	73	12	80	56	4	0	38	1.21
5661929--5662007	22	4.4	18	66	23	58	53	11	0	35	1.37
5661762--5661952	22	8.2	22	68	15	89	53	12	0	34	1.38
5661956--5661998	22	2.0	22	95	0	77	51	11	0	37	1.39
5661958--5662006	22	2.2	22	85	3	62	55	12	0	32	1.37
5662001--5662053	14	3.5	14	72	18	52	54	7	0	37	1.29
5662042--5662084	22	2.0	22	95	0	77	48	13	0	37	1.43
5662044--5662092	22	2.2	22	85	3	62	53	14	0	32	1.41
5662096--5662138	22	2.0	22	95	0	77	51	11	0	37	1.39
5662098--5662146	22	2.2	22	85	3	62	55	12	0	32	1.37
5662182--5662342	22	7.0	22	78	10	178	51	15	0	32	1.44
5662345--5662461	14	7.5	14	65	20	54	54	8	0	35	1.37
5662448--5662492	22	2.1	21	91	4	72	53	11	0	35	1.37
5662452--5662500	22	2.2	22	88	3	71	57	12	0	30	1.36
5662506--5662579	22	3.2	22	77	9	76	54	16	0	29	1.43
5662612--5662696	21	3.9	21	72	14	73	50	14	0	35	1.43
5662718--5662774	18	3.4	18	69	18	59	52	14	0	33	1.41
5662768--5662814	22	2.1	22	88	7	69	59	6	0	34	1.23
5662775--5662819	22	2.1	21	91	4	72	55	11	0	33	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5662822--5662894	22	3.1	23	70	14	60	53	13	1	31	1.49
5662902--5662954	14	3.5	14	72	18	52	54	7	0	37	1.29
5662943--5662985	22	2.0	22	95	0	77	48	13	0	37	1.43
5662945--5662993	22	2.2	22	85	3	62	53	14	0	32	1.41
5662997--5663039	22	2.0	22	95	0	77	51	11	0	37	1.39
5662999--5663047	22	2.2	22	85	3	62	55	12	0	32	1.37
5663083--5663243	22	7.0	22	76	13	162	52	13	0	34	1.41
5663223--5663340	32	3.7	32	94	0	209	53	11	0	34	1.42
5663349--5663396	22	2.4	19	78	18	53	52	14	0	33	1.42
5663390--5663524	15	8.5	15	75	17	121	54	4	0	40	1.20

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42