genome.fa.s7926.2.7.7.80.10.50.1000.41.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007926.1 Hibiscus syriacus cultivar Beakdansim tig00110332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10075380

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   

This is table  41  of  42  ( 5024 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9462879--9462910	2	16.5	2	93	6	57	50	0	0	50	1.00
9463548--9463613	21	3.2	20	79	14	71	28	19	19	31	1.97
9463622--9463737	20	5.7	19	77	10	81	29	26	22	21	1.99
9463643--9463736	20	4.7	20	79	7	109	27	26	22	23	1.99
9463663--9463740	41	1.9	41	91	0	129	30	24	21	23	1.99
9463663--9463751	41	2.2	41	85	0	115	33	23	20	22	1.97
9464258--9464313	20	2.8	20	88	0	76	23	17	23	35	1.95
9464281--9464336	20	2.8	20	91	0	85	12	16	21	50	1.78
9466056--9466118	31	2.0	32	84	12	85	22	7	15	53	1.67
9466256--9466392	34	3.9	34	75	11	139	35	24	21	18	1.95
9466237--9466396	20	8.6	20	70	18	121	36	23	20	18	1.95
9466248--9466393	74	2.0	74	97	0	274	36	23	20	19	1.95
9466447--9466486	20	2.0	20	95	0	71	22	10	17	50	1.76
9466970--9467073	21	5.0	21	71	4	75	20	37	19	23	1.94
9466964--9467073	42	2.6	42	79	0	112	20	36	19	24	1.95
9468446--9468511	30	2.2	30	97	0	123	30	1	13	54	1.48
9468667--9468916	20	13.5	19	70	19	163	23	20	21	34	1.96
9468617--9468787	93	1.8	94	83	3	229	23	19	19	36	1.95
9468696--9468910	54	4.0	54	90	3	317	21	20	21	35	1.96
9469093--9469127	18	1.9	18	94	0	61	17	2	25	54	1.57
9472236--9472362	20	6.3	20	82	5	166	24	20	27	27	1.99
9472377--9472424	20	2.4	20	92	0	78	27	16	14	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9472510--9472546	19	1.9	19	88	0	56	27	13	24	35	1.93
9475077--9475110	16	2.0	18	88	11	54	26	2	5	64	1.30
9475577--9475832	128	2.0	124	90	3	404	36	12	14	36	1.84
9476218--9476293	35	2.2	35	87	0	107	38	1	21	39	1.62
9479676--9479732	30	1.9	30	89	7	89	40	14	10	35	1.80
9482420--9482574	57	2.7	59	79	14	164	22	16	18	41	1.90
9482507--9482574	29	2.3	30	82	12	88	25	17	13	44	1.85
9483489--9483552	29	2.2	29	97	2	121	40	6	21	31	1.78
9486244--9486579	100	3.4	100	76	1	280	35	12	14	37	1.84
9486952--9487109	71	2.2	74	83	7	200	36	10	6	46	1.65
9487203--9487354	82	1.9	82	81	5	191	38	18	8	34	1.81
9494914--9494983	31	2.2	33	87	7	99	44	0	1	54	1.09
9495090--9495130	19	2.1	20	95	4	75	48	0	14	36	1.44
9495772--9495797	10	2.6	10	100	0	52	53	19	19	7	1.68
9496084--9496115	14	2.1	16	88	11	50	50	15	15	18	1.79
9501948--9502029	41	2.0	41	97	0	155	45	12	9	32	1.74
9515209--9515248	21	2.0	19	85	9	53	15	35	10	40	1.80
9516042--9516195	44	3.5	44	91	0	229	26	26	20	26	1.99
9522711--9522751	11	3.9	11	81	9	50	60	0	2	36	1.10
9522700--9522750	25	2.0	25	84	3	66	58	0	1	39	1.09
9522714--9522757	21	2.2	20	84	12	54	61	0	4	34	1.16
9537089--9537345	128	2.0	127	94	3	455	39	5	20	34	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9538337--9538379	2	21.0	2	95	4	77	48	0	2	48	1.14
9538692--9538775	23	3.7	23	90	3	134	19	25	27	28	1.98
9539519--9539553	13	2.7	13	95	0	61	34	20	11	34	1.88
9539532--9539697	85	2.0	85	90	0	260	30	21	17	31	1.96
9539718--9539744	11	2.5	11	100	0	54	37	0	0	62	0.95
9545896--9545928	15	2.2	15	100	0	66	39	33	21	6	1.78
9545914--9546011	24	4.1	24	93	2	162	40	33	20	5	1.74
9549793--9549831	19	2.1	19	95	4	71	25	25	28	20	1.99
9553582--9553625	2	22.5	2	95	4	81	47	0	0	52	1.00
9558754--9558812	28	2.2	26	82	8	66	50	3	3	42	1.35
9558869--9558902	17	2.0	17	100	0	68	23	41	0	35	1.55
9564287--9564320	2	17.0	2	100	0	68	50	0	0	50	1.00
9567195--9567220	11	2.4	11	100	0	52	23	11	30	34	1.90
9574738--9574780	15	2.7	15	82	7	50	53	2	0	44	1.13
9574753--9574783	15	2.0	16	93	6	55	48	0	0	51	1.00
9575069--9575116	19	2.5	19	83	12	62	31	0	0	68	0.90
9575798--9575860	31	2.0	31	93	0	108	46	0	41	12	1.42
9575805--9575871	31	2.2	31	88	0	98	46	2	41	8	1.50
9586916--9587006	27	3.4	27	73	14	89	57	14	1	27	1.45
9587205--9587249	21	2.1	21	91	0	72	40	4	0	55	1.20
9589006--9589053	23	2.1	23	88	0	69	37	14	14	33	1.87
9589259--9589325	30	2.2	29	82	10	73	43	0	4	52	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9589485--9589543	23	2.6	23	88	0	82	40	16	5	37	1.71
9589963--9590028	34	1.9	34	96	0	123	16	16	18	48	1.82
9590302--9590338	18	2.1	18	89	0	56	51	10	5	32	1.60
9590693--9590758	25	2.6	25	80	0	87	42	13	9	34	1.76
9593225--9593894	183	3.7	183	95	1	1152	33	17	14	34	1.90
9593225--9593894	363	1.8	365	92	2	1150	33	17	14	34	1.90
9594252--9594314	23	2.7	23	92	0	99	38	20	4	36	1.74
9595784--9595864	3	27.0	3	73	0	63	23	33	6	37	1.80
9595788--9595879	18	5.1	18	74	0	67	20	33	7	38	1.81
9595800--9595876	36	2.1	36	87	0	109	20	33	9	36	1.85
9595788--9595879	6	15.3	6	76	0	58	20	33	7	38	1.81
9597331--9598281	197	4.9	199	92	4	1604	31	15	15	37	1.89
9598399--9598446	18	2.6	19	86	6	71	56	10	2	31	1.45
9600309--9600370	22	2.9	21	76	4	61	19	29	14	37	1.91
9602551--9602592	19	2.3	18	84	11	59	19	14	11	54	1.70
9602737--9602794	19	3.0	19	78	12	64	17	15	15	51	1.76
9602525--9602990	179	2.6	179	86	5	604	26	16	14	42	1.86
9603054--9603751	222	3.1	225	93	3	1170	40	7	7	44	1.62
9607251--9608003	148	5.1	150	95	4	1347	36	24	10	28	1.89
9607251--9608003	293	2.6	298	94	5	1343	36	24	10	28	1.89
9609189--9609262	29	2.6	29	85	8	98	72	0	4	22	1.01
9609203--9609264	23	3.0	19	75	22	54	74	0	4	20	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9609189--9609262	28	2.6	28	87	8	96	72	0	4	22	1.01
9609181--9609267	22	4.0	22	77	18	69	74	0	3	21	0.96
9609935--9609981	3	15.3	3	87	12	53	70	0	0	29	0.88
9609927--9609977	23	2.2	23	86	13	70	68	0	1	29	1.00
9616822--9616881	29	2.1	28	84	9	77	35	1	5	58	1.30
9629468--9629545	30	2.6	30	76	9	79	33	25	3	37	1.74
9633718--9633767	24	2.1	24	100	0	100	46	16	12	26	1.81
9639217--9639253	18	2.0	20	89	10	60	43	2	0	54	1.14
9648648--9648687	17	2.4	17	100	0	80	47	12	7	32	1.69
9650658--9650688	15	2.0	16	93	6	55	32	6	3	58	1.40
9651913--9651994	29	2.8	29	94	1	137	32	14	9	42	1.79
9656674--9656755	29	2.8	29	94	1	137	32	14	9	42	1.79
9661815--9661863	25	2.0	25	84	15	66	30	0	0	69	0.89
9662305--9662382	31	2.5	33	78	19	94	25	3	1	69	1.13
9667262--9667306	21	2.1	21	83	0	54	26	20	24	28	1.99
9667994--9668032	15	2.6	15	84	11	53	64	2	5	28	1.28
9670188--9670543	177	2.0	175	90	1	559	41	10	15	32	1.82
9671241--9671266	7	3.7	7	100	0	52	15	0	26	57	1.38
9688693--9688733	21	2.0	21	85	4	57	43	0	39	17	1.49
9692167--9692207	21	2.0	21	85	4	57	43	0	39	17	1.49
9693000--9693042	21	2.0	21	82	13	52	48	2	2	46	1.27
9703709--9703839	20	6.5	19	82	3	91	33	21	20	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9704021--9704079	18	2.9	22	68	19	54	28	38	13	18	1.89
9704415--9704504	20	4.6	20	85	1	92	14	16	23	45	1.84
9704469--9704512	20	2.2	20	87	0	61	13	13	20	52	1.74
9706383--9706520	20	7.5	20	76	18	165	41	21	20	17	1.91
9706383--9706558	54	3.3	54	93	0	282	42	20	19	17	1.90
9706567--9706706	20	7.3	20	80	9	150	18	20	20	40	1.91
9707192--9707289	21	4.7	21	75	3	90	22	35	19	22	1.96
9707189--9707289	42	2.4	42	78	3	114	21	35	19	22	1.96
9708656--9708691	14	2.6	14	90	0	54	30	0	22	47	1.52
9708793--9708888	33	2.8	33	85	3	120	42	18	22	15	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42