genome.fa.s7926.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007926.1 Hibiscus syriacus cultivar Beakdansim tig00110332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10075380

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   

This is table  33  of  42  ( 5024 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7319571--7319622	21	2.4	21	93	3	86	17	21	23	38	1.93
7328414--7328503	18	4.8	18	75	16	76	46	20	20	13	1.83
7328414--7328677	20	13.2	20	75	15	219	41	21	20	16	1.90
7328414--7328669	40	6.4	40	81	12	287	40	22	20	16	1.91
7328416--7328677	60	4.4	60	78	14	249	41	22	20	16	1.90
7328766--7328898	6	22.5	6	88	10	177	30	51	18	0	1.46
7329390--7329439	6	8.3	6	100	0	100	0	16	50	34	1.45
7329540--7329774	20	11.7	20	80	17	274	16	20	25	37	1.93
7329532--7329779	40	6.2	40	87	8	339	16	19	25	39	1.92
7329532--7329836	20	15.2	20	75	16	251	16	19	23	40	1.91
7332515--7332634	59	2.0	59	93	0	204	53	14	14	18	1.73
7333648--7333742	18	5.8	14	72	25	55	16	21	11	50	1.76
7333677--7333760	18	4.8	18	77	14	86	15	19	10	54	1.69
7333654--7333760	51	2.0	53	85	7	146	16	20	10	52	1.73
7333691--7333742	15	3.3	15	78	17	61	15	21	9	53	1.70
7333648--7333763	33	3.4	33	81	15	130	17	20	11	50	1.76
7337806--7337842	18	2.1	18	94	0	65	13	21	8	56	1.63
7342367--7342450	42	2.0	42	100	0	168	45	28	7	19	1.76
7359307--7359343	19	1.9	19	94	0	65	45	0	2	51	1.15
7366088--7366134	20	2.2	22	81	11	62	21	6	19	53	1.67
7368861--7368885	13	1.9	13	100	0	50	0	12	0	88	0.53
7374637--7374666	6	5.0	6	95	0	51	16	16	20	46	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7374748--7374779	10	3.1	10	91	8	55	0	12	0	87	0.54
7374757--7374783	13	2.1	13	100	0	54	0	14	0	85	0.61
7380733--7381134	214	1.9	214	92	0	669	34	14	18	32	1.91
7381178--7381252	22	3.5	21	70	15	64	24	18	24	33	1.97
7381172--7381235	20	3.2	19	71	16	65	25	21	23	29	1.99
7381172--7381254	42	2.0	42	95	0	148	24	19	25	31	1.98
7381213--7381426	80	2.7	80	91	0	338	30	18	21	29	1.97
7381379--7381513	42	3.2	43	89	7	199	23	17	23	35	1.95
7381894--7382131	53	4.5	53	86	1	307	30	20	26	22	1.98
7386068--7386098	16	1.9	16	93	0	53	22	6	35	35	1.80
7386384--7386434	15	3.4	15	81	10	68	39	5	17	37	1.74
7386380--7386450	30	2.4	30	95	2	126	43	7	16	32	1.75
7386433--7386502	20	3.5	20	94	0	122	40	8	14	37	1.76
7386668--7386769	29	3.4	29	78	20	97	52	1	0	44	1.18
7386776--7386829	28	1.9	28	88	0	81	51	0	0	48	1.00
7386786--7386831	19	2.3	20	85	3	67	54	0	0	45	0.99
7386786--7386840	20	2.8	20	86	2	76	52	0	0	47	1.00
7387029--7387148	42	2.9	42	96	0	213	43	18	21	16	1.88
7387535--7387581	23	2.0	24	83	4	60	44	0	4	51	1.21
7387582--7387623	19	2.2	19	86	4	57	33	2	0	64	1.07
7387609--7387660	13	3.8	13	73	9	50	55	0	0	44	0.99
7387611--7387684	28	2.6	29	93	4	123	59	0	0	40	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7390051--7390089	14	2.8	13	88	7	51	23	2	5	69	1.21
7392213--7392271	26	2.4	23	73	15	55	32	3	3	61	1.29
7394350--7394649	149	2.0	149	90	2	469	33	20	15	31	1.93
7402350--7402382	3	11.0	3	100	0	66	66	0	0	33	0.92
7402497--7402552	26	2.2	26	83	6	69	53	0	1	44	1.11
7402577--7402694	55	2.2	55	90	1	184	43	3	8	44	1.51
7405806--7405840	18	1.9	18	88	0	52	74	2	11	11	1.18
7405837--7406513	342	2.0	344	87	2	977	38	16	8	36	1.79
7409827--7409987	65	2.5	65	87	4	218	29	21	18	31	1.97
7411510--7411583	31	2.4	31	81	0	85	36	14	17	31	1.90
7411704--7411762	31	1.9	31	85	0	82	27	10	23	38	1.87
7438107--7438151	23	2.0	23	86	0	63	26	26	26	20	1.99
7440488--7440570	43	2.0	42	82	2	103	39	10	10	38	1.75
7457462--7457619	21	7.8	20	70	7	77	38	24	17	19	1.92
7457586--7457875	20	14.5	20	80	5	257	37	24	17	20	1.94
7457606--7457875	60	4.5	60	85	3	294	37	24	17	21	1.94
7458558--7458604	24	2.0	24	87	8	69	25	14	21	38	1.92
7460940--7460991	19	3.0	18	76	21	58	48	19	21	11	1.80
7460987--7461115	19	7.3	19	70	17	98	9	16	27	47	1.77
7460987--7461078	33	2.8	33	86	3	132	7	17	27	47	1.74
7461163--7461532	93	4.1	93	93	4	655	45	18	12	23	1.83
7461184--7461532	180	1.9	181	97	0	664	45	18	12	23	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7463237--7463326	14	5.7	14	72	23	72	43	23	24	8	1.82
7463229--7463343	33	3.5	33	97	0	221	46	20	23	9	1.80
7463251--7463348	19	5.7	19	71	22	90	43	22	23	10	1.83
7463344--7463448	19	5.7	19	76	13	94	10	21	22	44	1.83
7463540--7463610	33	2.2	33	89	0	106	47	16	22	12	1.80
7463792--7463846	22	2.5	22	81	0	74	20	16	40	23	1.91
7463993--7464127	20	6.7	20	76	9	121	17	17	25	38	1.92
7464114--7464196	21	4.0	21	73	6	78	25	16	24	33	1.96
7464094--7464192	42	2.4	43	77	11	100	21	18	23	37	1.94
7468453--7468507	24	2.2	25	74	3	58	47	10	18	23	1.80
7469310--7469362	21	2.5	21	84	0	70	20	26	18	33	1.96
7469352--7469445	20	4.7	20	81	2	125	38	20	20	21	1.94
7469352--7469445	41	2.3	40	85	1	125	38	20	20	21	1.94
7469352--7469465	61	1.9	60	88	1	174	35	21	20	22	1.96
7471952--7472001	20	2.5	20	93	0	82	36	22	18	24	1.95
7472048--7472094	20	2.3	20	85	0	58	23	19	21	36	1.95
7472068--7472161	33	2.8	34	77	3	109	13	19	21	45	1.84
7472133--7472181	20	2.5	20	96	0	89	14	20	24	40	1.89
7472133--7472191	20	3.0	20	87	0	55	15	18	22	44	1.87
7472667--7472708	21	2.2	19	87	12	59	21	35	19	23	1.96
7474127--7474162	14	2.6	14	90	0	54	30	0	22	47	1.52
7474264--7474327	33	1.9	34	87	3	94	42	21	23	12	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7474331--7474418	19	4.8	19	76	16	96	14	21	18	45	1.85
7474331--7474451	52	2.3	53	86	2	172	14	23	19	42	1.87
7474423--7474511	20	4.4	20	88	2	126	17	21	24	35	1.95
7476941--7476994	24	2.2	24	90	0	81	40	20	16	22	1.91
7477855--7477921	20	3.3	20	75	4	80	19	17	20	41	1.90
7477911--7477963	21	2.5	21	90	0	79	33	16	26	22	1.96
7480043--7480072	11	2.7	11	100	0	60	20	16	30	33	1.94
7480262--7480295	17	1.9	17	88	5	50	32	8	14	44	1.76
7494193--7494228	6	5.8	6	87	6	54	47	0	0	52	1.00
7495249--7495288	4	9.8	4	83	5	53	32	0	0	67	0.91
7495247--7495281	17	2.0	18	88	5	54	37	0	0	62	0.95
7496595--7496759	66	2.5	66	98	0	321	23	23	15	37	1.93
7500500--7500552	22	2.5	22	84	3	63	56	3	1	37	1.28
7509842--7509910	3	23.3	3	97	2	131	33	0	0	66	0.92
7511170--7511250	38	2.1	38	90	0	126	9	7	20	61	1.51
7512239--7512272	16	2.1	17	94	5	61	50	0	0	50	1.00
7514973--7515009	14	2.5	15	86	4	58	67	2	2	27	1.17
7521323--7521350	2	14.0	2	100	0	56	50	0	0	50	1.00
7530778--7530818	21	1.9	21	85	5	55	63	14	17	4	1.47
7559687--7559764	31	2.5	31	85	0	111	33	14	26	25	1.94
7562157--7562225	23	3.0	23	86	0	93	27	26	26	20	1.99
7563784--7563826	22	2.0	22	90	0	68	11	25	37	25	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7565173--7565368	75	2.6	76	86	4	263	19	23	32	23	1.98
7565983--7566026	17	2.6	17	85	7	63	56	29	0	13	1.38
7565978--7566028	9	6.2	8	78	17	52	58	27	0	13	1.36
7567971--7568010	21	1.9	21	89	0	62	10	25	40	25	1.86
7567992--7568054	21	2.9	21	83	4	72	15	25	38	20	1.92
7573175--7573370	74	2.6	75	87	4	263	20	24	31	23	1.98
7576564--7576632	23	3.0	23	80	0	84	27	24	26	21	1.99
7579143--7579223	22	3.6	22	93	1	135	24	28	27	19	1.99
7579874--7579907	2	17.0	2	93	0	59	50	2	0	47	1.16
7580921--7580965	21	2.1	21	87	0	63	15	24	28	31	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42