genome.fa.s7926.2.7.7.80.10.50.1000.32.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007926.1 Hibiscus syriacus cultivar Beakdansim tig00110332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10075380

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   

This is table  32  of  42  ( 5024 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6885747--6887018	196	6.5	197	97	0	2351	31	16	15	36	1.90
6885747--6887018	393	3.2	394	96	1	2351	31	16	15	36	1.90
6885747--6887018	589	2.2	589	96	1	2347	31	16	15	36	1.90
6887143--6887191	19	2.6	19	90	6	73	55	10	4	30	1.52
6888983--6889048	33	2.0	33	90	0	105	22	48	0	28	1.51
6889082--6889146	21	3.1	21	80	6	69	15	29	15	40	1.88
6891376--6891422	20	2.4	19	80	19	69	21	17	10	51	1.75
6891652--6892100	229	2.0	228	94	1	783	39	7	8	45	1.62
6893038--6893101	28	2.3	29	84	10	80	64	9	6	20	1.45
6896178--6896215	16	2.4	16	86	4	51	28	0	2	68	1.03
6899033--6899076	12	3.7	12	81	0	61	20	31	13	34	1.92
6899037--6899127	24	3.7	24	80	11	85	20	30	9	38	1.86
6903448--6903500	21	2.5	21	96	0	97	26	11	32	30	1.91
6903448--6903508	21	2.9	21	92	0	86	26	11	31	31	1.91
6921139--6921186	20	2.2	21	85	10	62	27	6	6	60	1.45
6933522--6933557	18	2.1	18	89	5	56	33	11	0	55	1.35
6935595--6935682	19	4.2	20	77	17	99	30	29	5	34	1.81
6935603--6935684	44	1.9	41	87	7	119	32	29	6	31	1.82
6936296--6936415	59	2.0	59	98	0	231	22	19	10	48	1.78
6938042--6938085	20	2.2	20	95	0	79	38	15	4	40	1.68
6940029--6940117	44	2.0	44	97	0	169	32	20	16	30	1.95
6944563--6944593	7	4.4	7	100	0	62	12	0	0	87	0.55
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6948199--6948241	20	2.2	20	83	8	52	34	18	23	23	1.96
6951678--6951729	17	3.2	17	75	10	54	32	1	13	51	1.52
6954935--6955021	43	2.0	43	100	0	174	36	16	24	22	1.94
6962326--6962377	2	26.0	2	100	0	104	50	0	0	50	1.00
6972175--6972267	2	50.0	2	82	14	119	48	0	0	51	1.00
6976403--6976547	59	2.4	60	80	7	145	41	5	21	31	1.76
6979696--6979883	91	2.1	91	97	0	358	23	9	15	52	1.71
6980171--6980232	10	6.5	10	70	17	51	58	19	12	9	1.62
6980495--6980526	14	2.1	16	88	11	50	50	18	15	15	1.79
6980783--6980831	24	2.0	25	84	11	66	59	14	4	22	1.52
6986669--6986727	25	2.3	26	83	11	70	45	0	3	50	1.18
6986996--6987060	30	2.2	29	86	2	85	40	10	3	46	1.54
6991084--6991145	31	2.0	31	100	0	124	45	16	9	29	1.79
7019509--7019582	28	2.5	30	80	4	89	36	4	2	56	1.32
7019597--7019737	57	2.5	54	76	11	140	36	3	2	58	1.27
7019661--7019694	17	1.9	18	88	5	52	38	0	0	61	0.96
7019512--7019838	31	11.2	29	72	15	151	37	4	2	55	1.33
7023629--7023705	3	25.3	3	82	12	95	61	2	1	35	1.18
7023629--7023730	47	2.2	47	92	1	170	56	5	1	35	1.35
7027658--7027685	3	9.3	3	100	0	56	67	0	0	32	0.91
7031732--7031861	42	3.1	42	87	0	179	20	9	21	48	1.77
7033354--7033387	16	2.0	17	88	11	52	58	5	5	29	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7035466--7035496	2	15.5	2	100	0	62	48	0	0	51	1.00
7037646--7037686	22	1.9	22	90	5	66	68	0	0	31	0.90
7039715--7039748	14	2.4	14	100	0	68	32	23	5	38	1.79
7041216--7041245	14	2.1	14	93	0	51	53	0	10	36	1.35
7045150--7045200	15	3.4	15	88	0	75	13	66	13	5	1.42
7046752--7046798	20	2.3	21	81	3	60	34	14	6	44	1.71
7049730--7049756	6	4.5	6	100	0	54	55	0	0	44	0.99
7050557--7050598	20	2.1	20	86	0	57	9	23	26	40	1.85
7051091--7051129	20	2.0	20	90	10	62	66	2	2	28	1.18
7051169--7051422	37	6.7	37	85	6	314	43	9	3	44	1.53
7051169--7051422	114	2.2	113	86	3	339	43	9	3	44	1.53
7057907--7057973	18	3.7	18	73	0	53	29	28	5	35	1.81
7071593--7071639	19	2.5	19	86	3	60	34	4	8	53	1.51
7073340--7073375	18	2.0	18	94	0	63	22	8	0	69	1.15
7073473--7073514	21	2.0	21	95	0	75	52	11	4	30	1.59
7073721--7074095	188	2.0	185	91	2	608	46	9	3	40	1.53
7078604--7078633	2	15.0	2	92	0	51	46	0	0	53	1.00
7078599--7078633	12	2.9	12	86	0	52	45	0	0	54	0.99
7088760--7088901	75	1.9	75	84	7	189	28	18	14	38	1.90
7105317--7105342	13	2.0	13	100	0	52	30	23	7	38	1.83
7105363--7105402	14	2.8	15	88	7	57	35	27	7	30	1.84
7106131--7106168	17	2.2	17	100	0	76	42	0	21	36	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7106908--7107129	29	7.7	29	84	6	220	36	4	21	37	1.75
7108062--7108228	42	4.0	41	87	3	217	19	23	23	32	1.97
7109830--7109878	2	25.5	2	83	8	66	48	2	0	48	1.12
7124605--7124655	10	4.8	10	73	21	50	31	0	3	64	1.11
7124593--7124655	33	1.9	33	96	0	117	30	0	7	61	1.24
7126358--7126446	34	2.7	32	77	10	90	39	0	2	58	1.11
7127588--7127626	12	3.2	12	88	3	60	43	0	0	56	0.99
7127635--7127691	23	2.6	23	94	5	100	43	12	3	40	1.59
7128179--7128213	17	2.0	18	88	5	54	57	0	0	42	0.99
7132530--7132562	11	3.0	11	95	0	57	36	30	6	27	1.81
7138248--7138274	14	1.9	14	100	0	54	55	0	37	7	1.28
7147808--7148596	416	1.9	416	93	1	1348	39	18	14	27	1.89
7152259--7152314	20	2.7	21	86	5	78	32	23	23	21	1.98
7152829--7152874	20	2.3	20	100	0	92	47	0	30	21	1.51
7153690--7154005	103	3.1	103	96	0	578	26	13	23	36	1.92
7154023--7154066	23	1.9	23	90	0	70	20	27	25	27	1.99
7183948--7184005	30	2.0	29	89	3	89	43	22	13	20	1.87
7192761--7192817	27	2.1	28	87	9	82	59	0	1	38	1.08
7195002--7195093	31	3.0	31	93	3	150	38	22	19	19	1.94
7195769--7195813	21	2.1	21	87	0	63	15	24	28	31	1.96
7199618--7199771	31	5.0	31	96	1	274	38	22	19	19	1.94
7200447--7200491	21	2.1	21	91	0	72	15	22	28	33	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7202989--7203041	21	2.5	21	81	0	70	30	26	20	22	1.98
7211341--7211427	41	2.1	41	89	4	131	37	6	17	37	1.76
7214509--7214589	23	3.6	22	71	14	76	58	6	0	35	1.23
7215226--7215275	22	2.3	22	96	0	91	30	6	4	60	1.39
7221976--7222020	23	2.0	23	100	0	90	20	31	17	31	1.96
7222564--7222626	27	2.5	24	80	17	67	34	15	17	31	1.92
7222767--7222814	25	1.9	25	95	0	87	35	16	16	31	1.92
7222995--7223044	25	2.0	25	84	0	64	36	16	16	32	1.90
7223173--7223298	64	2.0	64	91	0	207	45	7	1	46	1.40
7223183--7223315	64	2.1	64	85	2	178	48	6	2	43	1.40
7228105--7228217	42	2.7	41	72	8	93	25	24	24	24	2.00
7236332--7236374	21	2.0	21	86	0	59	30	27	25	16	1.97
7236403--7236447	22	2.0	22	86	4	63	28	31	26	13	1.94
7237742--7237954	103	2.1	103	96	0	390	26	14	23	36	1.93
7237971--7238033	23	2.7	23	92	0	99	19	28	26	25	1.98
7246739--7246811	18	3.9	18	72	13	67	21	20	28	28	1.98
7249982--7250013	16	2.0	16	100	0	64	18	6	37	37	1.76
7252665--7252698	17	2.1	16	88	5	50	14	8	0	76	1.01
7255304--7255365	18	3.3	18	84	8	88	19	20	32	27	1.97
7257136--7257219	41	2.0	41	95	0	150	34	20	15	29	1.93
7264995--7265028	16	2.1	16	94	0	59	32	8	26	32	1.87
7271734--7271791	17	3.4	17	75	13	64	50	12	22	15	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7271724--7271792	35	2.0	35	94	0	120	47	10	24	17	1.78
7274795--7275196	210	1.9	211	94	0	716	29	15	23	31	1.95
7275479--7276066	292	2.0	290	93	3	993	28	16	18	36	1.92
7280573--7280660	27	3.1	27	63	15	70	38	11	2	47	1.52
7280519--7280669	57	2.6	57	97	0	284	37	13	2	46	1.57
7286386--7286481	48	2.0	49	87	6	142	35	14	7	42	1.74
7293309--7293425	58	2.0	58	94	0	207	30	16	13	39	1.87
7308964--7309041	41	1.9	41	94	0	138	29	15	16	38	1.90
7311059--7311127	18	3.7	18	77	7	84	28	30	20	20	1.97
7317758--7318107	182	1.9	183	88	3	535	25	14	18	41	1.88

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42