genome.fa.s7926.2.7.7.80.10.50.1000.8.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007926.1 Hibiscus syriacus cultivar Beakdansim tig00110332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10075380

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   

This is table  8  of  42  ( 5024 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1681361--1681446	35	2.5	35	84	0	100	37	1	20	40	1.61
1681551--1681621	29	2.4	29	83	4	88	26	11	35	26	1.90
1682711--1682741	15	2.1	15	100	0	62	64	6	6	22	1.40
1684939--1684974	19	1.9	18	88	5	54	27	8	0	63	1.23
1684946--1685190	125	2.0	122	95	4	442	28	11	4	56	1.53
1695854--1695879	13	2.0	13	100	0	52	84	0	15	0	0.62
1696672--1697340	105	6.4	105	96	0	1223	32	24	18	23	1.97
1698901--1698936	19	1.9	18	88	5	54	27	8	0	63	1.23
1698908--1699148	121	2.0	119	96	3	448	27	12	4	55	1.55
1705870--1705915	24	2.0	24	83	12	60	45	13	2	39	1.55
1706273--1706311	21	1.9	21	89	5	62	2	25	2	69	1.14
1709234--1709274	3	13.7	3	100	0	82	31	0	0	68	0.90
1711502--1711743	42	5.8	42	76	6	224	27	21	19	31	1.97
1714683--1714941	43	6.0	43	87	0	349	41	20	17	20	1.91
1714683--1714922	85	2.8	86	87	0	338	40	19	17	22	1.91
1714683--1714941	128	2.0	129	88	0	385	41	20	17	20	1.91
1714726--1714985	128	2.0	129	85	3	355	40	22	16	20	1.91
1715369--1715476	53	2.1	52	89	1	162	25	6	12	54	1.62
1719526--1719703	60	3.0	60	91	0	275	43	11	7	37	1.70
1721044--1721081	16	2.4	16	82	4	51	63	0	5	31	1.17
1721163--1721208	20	2.1	21	84	11	58	67	0	2	30	1.03
1722409--1723069	105	6.3	105	90	3	926	22	18	26	33	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1723903--1724061	67	2.4	67	86	4	214	33	11	22	31	1.91
1724020--1724089	36	1.9	36	85	0	95	38	12	21	27	1.90
1724114--1724412	37	8.6	37	70	17	237	38	13	21	27	1.90
1724003--1724394	102	3.9	102	93	1	644	36	12	21	29	1.90
1725291--1725341	22	2.3	22	96	0	93	25	11	27	35	1.91
1725952--1726005	20	2.6	21	85	5	65	1	12	7	77	1.05
1729330--1729389	24	2.6	24	79	12	63	65	1	5	28	1.23
1729361--1729398	16	2.4	16	82	4	51	63	0	5	31	1.17
1729563--1729608	23	2.1	23	84	8	60	58	0	4	36	1.18
1731973--1732048	3	26.0	3	76	10	77	39	0	1	59	1.06
1731973--1732048	21	3.7	21	77	16	88	39	0	1	59	1.06
1733305--1733363	29	2.1	28	84	9	77	27	5	1	66	1.22
1739476--1739529	27	2.0	26	92	3	90	75	11	9	3	1.15
1744292--1744368	22	3.5	22	92	0	127	35	10	12	41	1.78
1745045--1745752	75	9.4	75	96	0	1218	22	19	22	35	1.96
1745905--1745967	3	22.0	3	77	9	69	38	0	0	61	0.96
1745905--1745967	11	5.5	12	83	5	69	38	0	0	61	0.96
1746974--1747001	2	14.0	2	100	0	56	50	0	0	50	1.00
1747246--1747287	14	2.9	14	86	6	57	26	7	2	64	1.32
1750181--1750245	32	2.1	32	85	2	87	53	7	12	26	1.64
1755210--1755296	35	2.5	34	80	12	97	54	10	8	27	1.62
1757530--1757569	20	2.0	20	85	0	53	60	2	2	35	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1758048--1758092	13	3.4	13	75	6	54	37	2	0	60	1.09
1758051--1758092	14	3.1	14	79	3	50	35	2	0	61	1.09
1763989--1764030	18	2.3	18	100	0	84	30	14	0	54	1.40
1766021--1766045	7	3.6	7	100	0	50	68	0	0	32	0.90
1782475--1782518	22	2.0	23	81	4	54	56	2	4	36	1.32
1787809--1787987	89	2.0	89	100	0	358	38	15	17	27	1.91
1814317--1814368	24	2.2	24	96	0	95	28	9	3	57	1.48
1814896--1814941	11	4.4	11	78	8	51	60	17	2	19	1.46
1816724--1816779	10	5.4	11	83	10	73	58	21	1	17	1.47
1816721--1816779	21	2.8	20	85	7	82	59	22	1	16	1.46
1819070--1819099	14	2.1	15	93	6	53	26	6	3	63	1.35
1820489--1820535	2	23.5	2	100	0	94	51	0	0	48	1.00
1821633--1821684	20	2.6	19	79	8	59	65	0	0	34	0.93
1824472--1824511	21	1.9	21	94	0	71	22	12	10	55	1.67
1829268--1829485	114	1.9	114	91	0	355	32	16	22	28	1.96
1831022--1831084	30	2.1	30	84	0	81	33	28	19	19	1.96
1831765--1831925	64	2.5	64	82	4	182	26	19	18	34	1.95
1835092--1835141	25	2.0	25	100	0	100	16	32	0	52	1.44
1835296--1835358	30	2.1	30	84	0	81	33	28	19	19	1.96
1836038--1836198	64	2.5	64	84	4	200	27	19	18	34	1.95
1838269--1838430	54	3.0	54	91	0	261	37	14	24	24	1.93
1838798--1838874	22	3.5	22	90	0	118	33	10	11	44	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1839553--1840261	76	9.3	76	97	0	1337	23	19	22	34	1.97
1840404--1840451	3	15.7	3	81	12	53	39	0	0	60	0.97
1841898--1841939	20	2.2	19	86	4	57	33	0	2	64	1.07
1841796--1842012	120	1.8	119	81	5	269	37	7	8	46	1.63
1844413--1844470	26	2.2	26	87	3	80	58	5	0	36	1.20
1844421--1844470	26	1.9	26	91	0	82	62	4	0	34	1.14
1847777--1847802	6	4.3	6	100	0	52	34	30	34	0	1.58
1860514--1860618	37	2.8	37	85	0	138	41	14	14	29	1.85
1860811--1860883	2	37.0	2	94	2	130	47	0	0	52	1.00
1863039--1863108	34	2.1	32	81	5	77	24	25	15	34	1.95
1863480--1863546	20	3.3	21	89	4	93	29	19	31	19	1.96
1863559--1863664	8	14.8	8	69	23	58	25	16	34	23	1.95
1863476--1863657	21	8.6	20	78	13	150	26	18	31	23	1.97
1863748--1863807	30	2.0	30	96	0	111	45	20	5	30	1.72
1865070--1865198	8	18.0	8	67	22	56	24	15	35	24	1.94
1865114--1865190	21	3.7	21	94	0	136	24	15	37	22	1.93
1865282--1865341	30	2.0	30	96	0	111	45	20	5	30	1.72
1868113--1868649	183	2.9	183	91	0	878	28	19	21	30	1.97
1869805--1869918	36	3.2	34	71	9	86	25	16	14	43	1.85
1869789--1869964	72	2.4	75	84	7	218	26	18	13	42	1.87
1870058--1870132	39	1.9	39	83	5	98	26	22	13	37	1.91
1870035--1870353	105	3.1	104	91	4	495	30	20	12	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1870257--1870328	36	2.0	36	88	0	108	23	20	16	38	1.92
1870527--1871157	105	6.0	105	90	2	894	33	25	17	22	1.96
1871700--1871804	37	2.8	37	85	0	138	41	14	14	29	1.85
1872057--1872096	16	2.3	18	83	8	57	20	7	0	72	1.08
1872998--1873059	31	2.2	28	83	13	74	17	22	29	30	1.97
1877646--1877748	21	4.9	21	74	15	97	21	21	23	33	1.97
1877651--1877748	42	2.3	42	94	0	178	21	20	23	34	1.96
1877834--1877876	6	7.2	6	97	0	77	34	46	18	0	1.50
1877867--1877914	5	9.6	5	88	6	62	39	22	33	4	1.74
1878509--1878591	21	4.0	21	90	0	139	31	24	20	24	1.98
1878600--1878756	21	7.5	21	86	7	212	23	22	24	29	1.99
1878580--1878756	62	2.8	61	78	12	198	25	22	23	28	1.99
1878575--1878742	83	2.0	83	90	6	270	26	22	22	28	1.99
1889541--1889629	34	2.6	34	98	0	169	34	14	25	24	1.94
1894907--1894960	27	2.0	27	92	0	90	55	5	9	29	1.54
1895773--1895815	19	2.3	19	95	0	77	37	16	6	39	1.75
1897735--1897994	58	4.4	58	76	7	213	30	23	9	37	1.86
1897745--1897994	117	2.1	117	90	0	383	30	24	9	36	1.86
1897692--1898022	59	5.6	59	72	13	195	31	23	10	35	1.88
1904022--1904094	28	2.6	27	71	25	62	36	4	1	57	1.26
1904033--1904097	28	2.4	28	89	2	96	36	3	1	58	1.23
1904078--1904125	14	3.3	14	82	8	51	45	0	0	54	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1904098--1904130	16	2.1	16	94	0	57	54	0	3	42	1.15
1904176--1904215	8	5.0	8	82	11	55	50	0	0	50	1.00
1906471--1906513	21	2.0	21	81	0	50	30	30	25	13	1.94
1908119--1908179	23	2.7	23	92	0	95	19	27	26	26	1.99
1908947--1909001	22	2.5	22	75	0	56	29	9	23	38	1.85
1915209--1915266	19	2.8	21	84	10	66	22	34	25	17	1.96
1915230--1915272	19	2.3	19	84	8	52	20	32	32	13	1.92
1916902--1916931	12	2.5	12	94	0	51	26	30	36	6	1.82
1920388--1920425	20	2.0	20	89	5	60	26	7	2	63	1.35
1920388--1920437	19	2.6	19	84	9	66	28	8	2	62	1.35

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42