genome.fa.s7926.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007926.1 Hibiscus syriacus cultivar Beakdansim tig00110332_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10075380

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   

This is table  24  of  42  ( 5024 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5008573--5008726	31	5.0	31	93	0	236	22	18	21	37	1.94
5009365--5009404	21	1.9	21	94	0	71	27	20	25	27	1.99
5013113--5013232	63	1.9	63	83	6	154	19	28	28	24	1.98
5013113--5013193	31	2.6	31	76	9	83	17	30	29	22	1.96
5013960--5013999	19	2.0	20	95	4	73	37	17	10	35	1.83
5014263--5014324	31	2.0	31	96	0	115	27	19	12	40	1.88
5014450--5014506	2	28.5	2	100	0	114	49	0	0	50	1.00
5014749--5014967	108	2.0	107	88	0	321	37	15	14	31	1.88
5028414--5028458	19	2.4	17	80	20	54	75	11	0	13	1.05
5028423--5028456	9	3.6	9	92	8	50	70	11	0	17	1.16
5028420--5028457	10	3.8	10	89	10	60	71	13	0	15	1.16
5031221--5031299	38	2.1	38	97	0	149	36	15	20	27	1.92
5036220--5036268	16	3.1	15	77	8	53	42	2	2	53	1.24
5044183--5044216	17	2.0	17	100	0	68	23	17	17	41	1.90
5045813--5045896	42	2.0	42	84	8	111	29	5	8	55	1.53
5046672--5046714	16	2.6	16	96	3	77	16	11	18	53	1.72
5049177--5049337	64	2.5	64	83	0	187	32	19	22	25	1.98
5049887--5049947	22	2.8	22	92	0	95	19	21	27	31	1.97
5058903--5058962	19	3.3	19	72	9	61	6	13	28	51	1.66
5064434--5064506	3	24.3	3	74	20	64	2	34	2	60	1.25
5064434--5064504	27	2.6	27	97	0	133	2	33	2	60	1.26
5077444--5077492	24	2.0	24	92	0	80	40	16	18	24	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5081805--5081952	77	1.9	75	80	2	170	33	16	11	38	1.85
5096765--5096844	36	2.2	36	89	6	119	33	5	17	43	1.71
5110571--5110603	2	16.5	2	100	0	66	48	0	0	51	1.00
5117843--5117927	43	2.0	42	93	2	143	45	8	10	35	1.69
5119305--5119342	19	2.1	18	95	5	67	73	0	0	26	0.83
5120375--5120646	83	3.3	83	82	4	300	24	20	23	31	1.98
5120648--5120709	29	2.1	30	84	3	81	30	9	12	46	1.74
5120712--5120827	36	3.2	36	84	7	144	40	14	18	25	1.89
5121770--5121864	32	2.9	32	87	1	136	37	21	10	30	1.87
5122937--5122987	27	2.0	25	88	11	77	3	17	3	74	1.12
5122938--5122987	13	4.0	12	80	16	57	2	18	4	76	1.04
5126043--5126079	3	12.7	3	94	5	67	70	0	0	29	0.88
5126622--5126692	37	1.9	37	94	0	124	35	12	11	40	1.79
5128283--5128331	14	3.6	14	77	5	64	12	4	16	67	1.37
5128280--5128344	27	2.4	27	100	0	130	10	7	18	63	1.50
5128297--5128345	13	3.7	13	78	5	62	10	10	18	61	1.55
5128388--5128429	16	2.4	18	82	17	54	38	21	0	40	1.53
5128581--5128638	31	1.9	29	86	13	82	51	15	8	24	1.71
5129012--5129079	30	2.2	30	84	7	84	22	11	10	55	1.65
5140742--5140773	2	16.0	2	100	0	64	50	0	0	50	1.00
5167623--5167651	10	2.7	11	94	5	51	41	13	6	37	1.72
5171419--5171524	50	2.1	50	89	0	158	22	27	18	31	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5177475--5177526	24	2.2	24	85	0	68	9	15	26	48	1.76
5177485--5177526	14	3.3	14	75	25	56	7	14	26	52	1.67
5177485--5177533	24	2.0	24	100	0	98	8	14	24	53	1.68
5177491--5177546	24	2.3	24	90	0	85	12	10	19	57	1.64
5178717--5178749	16	2.1	16	94	0	57	9	12	24	54	1.66
5181026--5181066	21	2.0	19	86	13	55	21	0	2	75	0.92
5184941--5185034	44	2.1	44	92	0	152	20	7	27	44	1.78
5189021--5189188	84	2.0	84	89	2	257	23	16	23	35	1.95
5191960--5191992	17	1.9	17	88	11	50	51	0	12	36	1.39
5192063--5192096	13	2.6	13	95	0	59	38	38	0	23	1.55
5194569--5194654	30	2.8	31	80	8	95	26	3	1	68	1.13
5194732--5194802	36	2.0	36	81	10	83	38	1	0	60	1.06
5194758--5194782	13	1.9	13	100	0	50	16	0	0	84	0.63
5194810--5194927	34	3.6	33	69	24	88	51	0	6	40	1.34
5194865--5194936	34	2.2	33	85	9	94	48	0	6	44	1.29
5195048--5195123	29	2.6	29	87	2	107	67	3	2	26	1.22
5197379--5197420	4	10.5	4	94	0	75	26	2	23	47	1.64
5197403--5197722	109	3.0	103	80	7	408	41	15	18	25	1.89
5202994--5203050	29	1.9	31	82	13	75	38	8	5	47	1.57
5203649--5203747	19	5.0	19	74	22	78	52	0	2	45	1.12
5203654--5203750	21	4.8	20	78	18	94	53	0	1	45	1.07
5203650--5203747	40	2.5	40	93	3	162	53	0	1	45	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5207047--5207081	17	2.1	17	88	0	52	22	20	34	22	1.97
5207106--5207252	73	2.0	73	87	0	213	40	9	9	40	1.70
5207946--5208012	28	2.3	29	82	10	84	52	8	1	37	1.42
5211575--5211614	21	1.9	21	94	0	71	57	0	0	42	0.98
5212861--5212897	17	2.2	17	90	0	56	24	2	2	70	1.14
5220903--5221814	455	2.0	457	98	0	1783	29	16	18	35	1.93
5224716--5224812	20	4.8	20	73	14	81	38	21	19	20	1.94
5224780--5224975	20	9.8	20	81	7	191	34	26	18	19	1.96
5224780--5224975	60	3.2	60	84	5	252	34	26	18	19	1.96
5225319--5225384	31	2.1	33	88	5	100	10	22	18	48	1.78
5225466--5225539	21	3.5	20	80	8	94	47	17	20	14	1.83
5225562--5225688	19	7.1	19	70	21	69	11	25	18	44	1.83
5225567--5225689	33	3.5	33	83	12	149	12	24	17	45	1.83
5225625--5225688	21	3.1	21	81	4	94	10	26	15	46	1.79
5227331--5227548	93	2.4	93	97	1	413	22	13	18	45	1.85
5227665--5227694	13	2.3	13	94	0	51	46	23	20	10	1.80
5227648--5227767	33	3.7	33	88	4	156	46	27	16	9	1.77
5227678--5227759	14	4.9	18	69	26	63	47	26	18	7	1.74
5227696--5227754	14	3.9	14	76	20	64	47	28	16	6	1.72
5227678--5227767	19	5.3	18	71	24	79	47	27	16	7	1.74
5227770--5227861	33	2.8	32	85	4	130	11	20	20	46	1.82
5227770--5227922	19	8.5	19	69	17	103	9	20	22	47	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5229869--5229971	19	6.1	18	74	24	100	44	17	24	13	1.85
5229869--5229971	50	2.0	50	90	9	165	44	17	24	13	1.85
5229961--5230219	19	14.7	19	79	17	301	14	22	17	45	1.84
5229967--5230233	53	5.1	52	89	6	407	13	22	17	46	1.83
5229967--5230233	104	2.6	103	91	4	414	13	22	17	46	1.83
5233376--5233604	20	11.4	20	86	1	235	18	17	25	38	1.92
5233572--5233669	21	4.8	20	75	10	81	21	19	21	37	1.94
5233572--5233670	42	2.4	43	77	11	100	21	19	22	37	1.94
5238071--5238175	55	1.9	55	92	0	174	39	7	14	39	1.74
5238826--5239236	205	2.0	205	100	0	822	28	21	26	23	1.99
5244274--5244534	79	3.3	79	90	1	407	32	26	19	21	1.97
5249152--5249200	20	2.5	20	86	6	64	16	28	22	32	1.95
5249168--5249206	20	2.0	20	84	0	51	20	30	17	30	1.96
5249220--5249266	5	9.8	5	77	9	53	21	51	21	6	1.70
5249218--5249265	14	3.1	14	74	25	51	20	50	20	8	1.74
5249225--5249260	9	3.9	9	92	7	63	22	47	22	8	1.77
5249220--5249266	19	2.5	19	92	0	85	21	51	21	6	1.70
5256451--5256480	7	4.4	7	91	8	53	16	30	30	23	1.96
5256451--5256480	13	2.2	14	94	5	53	16	30	30	23	1.96
5258913--5258950	19	2.0	19	85	10	51	26	18	15	39	1.91
5259388--5259427	21	1.9	21	94	0	71	0	40	12	47	1.41
5264284--5264428	30	4.8	30	86	1	182	23	11	14	51	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
5264722--5264873	82	1.8	83	84	4	209	28	20	17	34	1.95
5271402--5271444	21	2.0	21	81	0	50	30	30	25	13	1.94
5271988--5272291	149	2.0	149	97	0	572	27	16	20	36	1.93
5278357--5278399	21	2.0	21	86	0	59	32	30	23	13	1.93
5278426--5278463	20	1.9	20	94	0	67	23	36	31	7	1.84
5278917--5279211	149	2.0	149	96	0	545	27	16	20	36	1.93
5279993--5280095	51	2.0	51	100	0	206	19	21	19	39	1.92
5285639--5285689	25	2.1	24	85	10	68	43	5	7	43	1.57
5286805--5286857	21	2.5	22	81	12	65	71	1	7	18	1.19
5286809--5286904	21	4.6	20	70	15	61	67	3	8	20	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42