genome.fa.s7957.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: VEPZ01007957.1 Hibiscus syriacus cultivar Beakdansim tig00110384_pilon, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  8646418

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   

This is table  18  of  43  ( 5063 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3472617--3472830	44	4.9	44	71	5	155	27	21	22	29	1.99
3473248--3473363	21	5.8	21	75	14	102	44	18	16	20	1.86
3473239--3473382	36	3.9	36	78	13	148	44	18	16	20	1.87
3473413--3473484	37	2.0	36	83	2	90	41	11	19	27	1.85
3473592--3474281	264	2.6	263	86	2	929	32	21	18	27	1.96
3474249--3474504	43	6.0	43	90	0	397	23	31	15	29	1.95
3476485--3476539	26	2.1	26	86	10	76	0	14	3	81	0.82
3476485--3476521	18	2.1	18	90	5	58	0	16	0	83	0.64
3476803--3476837	2	17.5	2	100	0	70	51	0	0	48	1.00
3483950--3484100	77	2.0	77	86	0	212	25	21	16	37	1.94
3498372--3498415	23	1.9	23	90	0	70	29	13	6	50	1.68
3502768--3502954	103	1.8	104	81	3	234	25	14	21	37	1.92
3502768--3502980	103	2.1	104	80	2	232	25	14	22	37	1.92
3515549--3515687	32	4.4	32	74	5	129	31	18	15	34	1.92
3516410--3516452	9	4.7	9	97	2	77	48	18	9	23	1.76
3516458--3516805	184	1.9	185	93	1	601	45	8	3	41	1.53
3516452--3516845	184	2.1	183	88	3	596	44	8	3	43	1.51
3521071--3521130	20	2.8	22	82	10	79	48	15	11	25	1.78
3525302--3525332	15	2.1	15	93	0	53	12	12	3	70	1.27
3526873--3526907	18	1.9	18	100	0	70	28	22	20	28	1.98
3526930--3526973	20	2.2	20	95	0	79	25	22	20	31	1.98
3528842--3528917	40	1.9	39	89	2	116	32	27	7	31	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3533668--3533817	77	1.9	81	83	5	200	44	4	8	43	1.54
3546859--3546896	19	2.0	19	85	10	51	31	10	21	36	1.87
3548881--3548931	22	2.3	22	96	0	93	23	13	29	33	1.93
3553632--3553677	23	2.0	23	100	0	92	52	21	13	13	1.73
3555506--3555560	19	2.8	20	75	5	58	10	21	1	65	1.33
3578687--3578743	24	2.4	24	96	0	105	36	14	15	33	1.88
3578713--3578827	49	2.3	49	85	2	151	43	13	8	33	1.75
3581731--3581826	31	3.2	30	79	8	97	34	4	12	48	1.60
3581750--3581828	30	2.6	30	78	4	88	39	3	12	44	1.61
3582908--3582954	2	23.5	2	100	0	94	51	0	0	48	1.00
3583283--3583327	17	2.6	17	89	0	63	26	11	20	42	1.85
3584287--3584400	60	1.9	59	82	8	142	40	3	23	32	1.72
3584794--3584836	16	2.8	16	85	3	61	27	23	11	37	1.89
3584948--3584986	18	2.2	18	85	0	51	35	2	7	53	1.43
3584964--3585016	26	2.0	26	88	0	79	49	3	3	43	1.38
3589043--3589085	21	2.0	22	86	13	63	37	9	32	20	1.85
3598041--3598234	80	2.4	82	82	2	248	29	17	19	33	1.95
3598575--3598645	35	2.0	35	91	5	117	25	15	30	28	1.96
3602086--3602305	112	2.0	112	90	3	345	23	30	6	40	1.79
3604727--3604767	21	2.0	21	90	0	64	41	19	0	39	1.52
3604791--3604856	21	3.2	20	73	16	64	60	12	9	18	1.57
3606045--3606137	3	31.0	3	100	0	186	0	33	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3606622--3606667	15	2.9	15	83	6	56	71	0	0	28	0.86
3606616--3606686	23	3.1	23	80	11	76	73	0	2	23	0.97
3606624--3606686	12	5.3	12	83	9	60	73	0	1	25	0.93
3606605--3606733	28	4.6	27	71	13	84	71	0	6	22	1.08
3607893--3607959	11	5.5	12	75	18	59	71	1	0	26	0.94
3607909--3607954	24	1.9	24	86	8	67	69	2	0	28	1.00
3607905--3607957	28	1.9	27	88	3	79	69	1	0	28	0.99
3607982--3608412	36	11.8	35	78	14	258	44	6	3	45	1.47
3607982--3608402	108	3.8	108	84	9	500	44	6	3	45	1.46
3608329--3608376	24	2.0	25	87	4	71	43	6	2	47	1.40
3608404--3608446	14	3.2	13	78	12	50	41	6	4	46	1.51
3609231--3609546	170	1.9	171	88	2	483	25	17	22	34	1.96
3609231--3609548	85	3.7	85	86	2	424	25	17	22	34	1.96
3609615--3609811	86	2.3	86	88	0	286	24	23	24	27	2.00
3611066--3611259	95	2.0	95	87	3	275	31	18	15	34	1.92
3615031--3615055	13	1.9	13	100	0	50	80	0	0	20	0.72
3616220--3616635	37	11.2	37	83	10	446	43	6	4	45	1.50
3616195--3616636	75	6.0	73	84	8	483	43	6	4	45	1.49
3623690--3623728	19	2.1	19	90	0	60	33	30	12	23	1.92
3623777--3623817	21	2.0	21	85	0	55	29	19	14	36	1.92
3623854--3624025	20	8.5	20	80	7	186	30	28	15	25	1.96
3623833--3624025	61	3.2	61	81	6	248	32	27	15	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3623878--3624025	41	3.6	41	86	2	183	31	28	15	25	1.96
3623855--3624045	61	3.1	59	74	12	190	31	27	15	25	1.95
3624846--3624899	24	2.2	24	93	0	90	25	16	16	40	1.89
3627000--3627034	18	1.9	18	94	0	61	54	25	2	17	1.57
3627202--3627367	20	8.6	20	77	8	166	33	21	18	27	1.96
3628905--3629027	42	2.9	42	78	7	142	23	17	35	22	1.95
3628905--3629022	21	5.6	21	74	0	101	22	17	35	23	1.95
3629525--3629592	20	3.4	19	78	8	64	39	23	19	17	1.92
3629702--3629764	20	3.2	19	84	4	81	22	20	20	36	1.95
3629932--3629956	11	2.3	11	100	0	50	48	8	16	28	1.74
3631667--3631722	20	2.8	20	91	0	85	50	23	16	10	1.76
3631670--3631738	20	3.5	20	89	0	84	42	24	17	15	1.88
3631730--3631764	14	2.5	14	95	0	61	45	22	20	11	1.82
3632173--3632221	22	2.2	22	100	0	98	18	14	44	22	1.85
3633886--3634050	80	2.1	79	90	2	260	53	10	4	32	1.54
3633996--3634036	22	2.0	22	85	9	59	58	12	4	24	1.53
3640887--3641125	128	1.9	128	86	1	345	36	13	15	34	1.86
3641202--3641444	131	1.9	131	81	6	296	32	15	17	34	1.91
3647548--3647616	23	3.0	23	86	0	93	17	21	26	34	1.95
3652281--3652537	125	2.1	125	80	4	286	34	16	15	33	1.90
3652190--3652460	83	3.3	83	76	2	231	33	15	15	35	1.89
3655172--3655379	75	2.8	75	86	5	269	23	31	24	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3661440--3661491	23	2.3	23	80	6	72	21	40	21	17	1.91
3661472--3661511	21	1.9	21	89	0	62	25	40	25	10	1.86
3664034--3664156	54	2.3	54	85	1	158	21	30	24	23	1.99
3665370--3665412	14	3.1	14	96	0	77	34	25	6	32	1.83
3667732--3667885	40	3.8	40	80	6	148	38	18	23	19	1.93
3667749--3667899	43	3.6	43	78	7	143	39	15	23	20	1.91
3667994--3668311	160	2.0	158	96	3	595	22	16	20	40	1.91
3668949--3668999	18	2.9	17	80	11	59	70	0	3	25	1.04
3670266--3670343	40	2.0	40	84	5	104	34	15	16	33	1.90
3672885--3672917	11	3.1	11	82	8	50	0	21	0	78	0.75
3674756--3675069	154	2.0	154	93	0	529	28	17	15	37	1.91
3676121--3676145	13	1.9	13	100	0	50	24	16	36	24	1.94
3678571--3678611	21	2.0	21	85	9	57	56	14	17	12	1.68
3679384--3679423	16	2.6	15	88	11	55	25	2	0	72	0.97
3679393--3679456	27	2.3	28	79	15	71	23	1	1	73	1.01
3679382--3679427	16	2.7	17	77	19	51	26	2	0	71	0.97
3692446--3692521	37	2.1	37	87	2	109	36	19	22	21	1.95
3692401--3692881	84	5.8	85	78	8	496	34	19	18	26	1.95
3692401--3692861	169	2.8	165	80	7	449	34	19	18	26	1.95
3692401--3692881	42	11.6	42	78	11	424	34	19	18	26	1.95
3694257--3694285	14	2.1	14	100	0	58	51	13	13	20	1.75
3696033--3696093	25	2.4	25	88	2	86	44	6	37	11	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3697100--3697139	19	2.1	19	90	0	62	17	32	22	27	1.96
3698839--3698918	36	2.2	36	86	0	115	27	20	17	35	1.95
3703393--3703506	36	3.2	36	85	3	142	27	18	19	35	1.95
3703452--3703532	35	2.3	35	87	4	110	29	18	12	39	1.87
3704878--3704964	32	2.7	32	77	7	95	21	12	26	39	1.89
3705727--3705775	19	2.7	18	78	6	55	40	4	2	53	1.32
3713299--3713359	16	3.8	16	74	8	52	11	11	29	47	1.75
3716419--3716454	18	2.1	18	94	5	65	75	5	19	0	1.00
3716634--3716671	16	2.5	15	84	16	51	44	0	7	47	1.32
3717255--3717283	12	2.3	13	94	5	51	27	6	24	41	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43